Wall clock time and date at job start Tue Mar 31 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45193 * 109.47415 * 2 1 4 4 C 1.34238 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99304 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99777 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.46617 * 174.30030 * 6 4 3 8 8 C 1.46909 * 110.99678 * 287.82319 * 7 6 4 9 9 C 1.50694 * 109.47221 * 295.15789 * 8 7 6 10 10 H 1.07999 * 120.00099 * 5.35590 * 9 8 7 11 11 C 1.37881 * 120.00026 * 185.35916 * 9 8 7 12 12 N 1.31512 * 119.99816 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00032 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47256 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46805 * 119.99721 * 13 11 9 16 16 H 1.48498 * 109.47402 * 239.99852 * 13 11 9 17 17 C 1.46897 * 111.00182 * 163.87366 * 7 6 4 18 18 C 1.50694 * 109.47529 * 189.99719 * 17 7 6 19 19 C 1.35312 * 126.04361 * 260.02493 * 18 17 7 20 20 N 1.34943 * 107.75030 * 179.97438 * 19 18 17 21 21 H 0.97001 * 126.03631 * 179.97438 * 20 19 18 22 22 N 1.40080 * 107.92522 * 0.23958 * 20 19 18 23 23 C 1.30846 * 108.20465 * 359.59155 * 22 20 19 24 24 C 1.50694 * 125.89855 * 180.14315 * 23 22 20 25 25 F 1.39897 * 109.47647 * 270.30496 * 24 23 22 26 26 F 1.39908 * 109.47452 * 30.30468 * 24 23 22 27 27 F 1.39905 * 109.47163 * 150.30152 * 24 23 22 28 28 H 1.08998 * 109.46921 * 300.00642 * 1 2 3 29 29 H 1.09008 * 109.46904 * 60.00217 * 1 2 3 30 30 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47626 * 239.99924 * 2 1 3 32 32 H 1.09004 * 109.47289 * 120.00096 * 2 1 3 33 33 H 1.08998 * 109.47210 * 54.30570 * 6 4 3 34 34 H 1.08997 * 109.47146 * 294.29330 * 6 4 3 35 35 H 1.08996 * 109.47164 * 55.15909 * 8 7 6 36 36 H 1.09001 * 109.46528 * 175.15708 * 8 7 6 37 37 H 0.97001 * 120.00016 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.47233 * 69.99359 * 17 7 6 39 39 H 1.09006 * 109.46811 * 310.00041 * 17 7 6 40 40 H 1.08003 * 126.12629 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 7 5.3814 2.8629 0.1392 8 6 5.7619 2.4665 1.5017 9 6 5.3385 3.5378 2.4733 10 1 4.7613 4.3827 2.1277 11 6 5.6880 3.4394 3.8034 12 7 6.3905 2.4103 4.2242 13 14 5.1638 4.7677 5.0076 14 1 4.3878 5.8096 4.2884 15 1 4.3184 4.1667 6.0702 16 1 6.3681 5.3824 5.6217 17 6 6.0110 4.1367 -0.2335 18 6 7.5044 3.9535 -0.3174 19 6 8.4036 4.2992 0.6328 20 7 9.6306 3.9715 0.1768 21 1 10.4685 4.1047 0.6470 22 7 9.4811 3.4107 -1.0981 23 6 8.2060 3.3952 -1.3909 24 6 7.5987 2.8723 -2.6671 25 9 7.5273 3.9056 -3.6074 26 9 8.3930 1.8369 -3.1716 27 9 6.3119 2.3885 -2.4073 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5053 3.5020 0.8358 34 1 3.6693 3.4349 -0.9354 35 1 5.2696 1.5284 1.7580 36 1 6.8428 2.3356 1.5534 37 1 6.6367 2.3412 5.1599 38 1 5.7791 4.8906 0.5189 39 1 5.6297 4.4608 -1.2019 40 1 8.1794 4.7557 1.5856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141018244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:44 Heat of formation + Delta-G solvation = -169.051853 kcal Electronic energy + Delta-G solvation = -30572.066619 eV Core-core repulsion = 25780.592411 eV Total energy + Delta-G solvation = -4791.474207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.06967 -48.62870 -48.50825 -42.43467 -41.31089 -38.51990 -37.15575 -34.55194 -33.44129 -32.69251 -32.03031 -29.60662 -28.27419 -27.53264 -25.98100 -24.30051 -23.03798 -22.58216 -21.58032 -21.17638 -19.48537 -19.25319 -18.98484 -18.44435 -18.29200 -18.05305 -17.60550 -16.97766 -16.54335 -16.33144 -15.77725 -15.56369 -15.40864 -15.22467 -15.00231 -14.93412 -14.74284 -14.67143 -14.62276 -14.45851 -14.11188 -13.87508 -13.55970 -13.35893 -13.11029 -12.92643 -12.77003 -12.52957 -12.44676 -12.39492 -12.30908 -12.05491 -11.80301 -11.59203 -11.41843 -11.21264 -10.94260 -10.52231 -9.67747 -8.90880 -8.04694 -6.25152 0.56226 1.25762 1.29246 1.42242 1.44302 1.47704 1.56487 1.85017 2.04449 2.43959 2.79656 3.06516 3.20343 3.43341 3.55901 3.95462 3.98920 4.04598 4.09243 4.18257 4.39010 4.40718 4.46833 4.60186 4.70039 4.84280 4.91416 4.97184 5.07523 5.19128 5.25393 5.36507 5.48862 5.59756 5.87473 6.06491 6.14603 6.29792 6.39081 6.49469 6.96557 7.03488 7.46585 8.97053 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.007939 B = 0.006016 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.922184 B = 4652.789108 C = 7482.330550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.527 6.527 6 C 0.069 3.931 7 N -0.528 5.528 8 C 0.211 3.789 9 C -0.546 4.546 10 H 0.074 0.926 11 C 0.019 3.981 12 N -0.926 5.926 13 Si 0.950 3.050 14 H -0.257 1.257 15 H -0.294 1.294 16 H -0.279 1.279 17 C 0.135 3.865 18 C -0.191 4.191 19 C 0.098 3.902 20 N -0.441 5.441 21 H 0.460 0.540 22 N -0.270 5.270 23 C -0.013 4.013 24 C 0.556 3.444 25 F -0.169 7.169 26 F -0.180 7.180 27 F -0.151 7.151 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.135 0.865 35 H -0.013 1.013 36 H 0.011 0.989 37 H 0.260 0.740 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.352 5.044 -9.797 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.306 3.694 5 O -0.415 6.415 6 C -0.060 4.060 7 N -0.253 5.253 8 C 0.084 3.916 9 C -0.585 4.585 10 H 0.092 0.908 11 C -0.181 4.181 12 N -0.566 5.566 13 Si 0.776 3.224 14 H -0.180 1.180 15 H -0.221 1.221 16 H -0.205 1.205 17 C 0.008 3.992 18 C -0.203 4.203 19 C -0.051 4.051 20 N -0.153 5.153 21 H 0.309 0.691 22 N -0.096 5.096 23 C -0.179 4.179 24 C 0.500 3.500 25 F -0.150 7.150 26 F -0.161 7.161 27 F -0.132 7.132 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.153 0.847 35 H 0.005 0.995 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.769 3.981 -10.420 11.294 hybrid contribution -0.541 0.543 2.070 2.208 sum -2.310 4.524 -8.350 9.774 Atomic orbital electron populations 1.21791 0.89835 1.04306 1.03797 1.23201 0.97389 0.79780 1.01755 1.86475 1.24231 1.33244 1.84369 1.24197 0.80275 0.93526 0.71376 1.90622 1.61078 1.44202 1.45566 1.21538 0.89986 0.89217 1.05251 1.62031 1.05222 1.30344 1.27675 1.19308 0.95233 0.93966 0.83056 1.22014 1.34398 1.08249 0.93856 0.90805 1.25709 0.94948 0.97297 1.00119 1.70131 1.39247 1.31157 1.16085 0.85632 0.78105 0.79667 0.78993 1.18022 1.22119 1.20488 1.20302 0.87433 0.90524 1.00986 1.19745 0.97469 1.09214 0.93875 1.22829 0.83935 0.98732 0.99588 1.46190 1.09424 1.47139 1.12537 0.69103 1.77106 1.16359 1.18298 0.97878 1.21975 0.93355 1.05713 0.96895 1.16869 0.76459 0.75173 0.81493 1.93208 1.96255 1.58659 1.66914 1.93185 1.74316 1.60049 1.88580 1.93336 1.38052 1.88004 1.93798 0.91583 0.90599 0.88210 0.91460 0.93026 0.89696 0.84705 0.99506 0.97103 0.93062 0.91736 0.89335 0.78146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 10.29 71.98 0.74 -1.89 16 2 C 0.05 1.47 6.19 71.98 0.45 1.91 16 3 O -0.37 -12.27 10.22 -51.50 -0.53 -12.80 16 4 C 0.46 18.23 7.54 71.24 0.54 18.77 16 5 O -0.53 -24.87 14.90 21.98 0.33 -24.54 16 6 C 0.07 2.43 5.43 85.56 0.46 2.89 16 7 N -0.53 -21.24 3.37 -909.93 -3.07 -24.31 16 8 C 0.21 10.48 4.61 85.55 0.39 10.87 16 9 C -0.55 -26.47 7.32 25.60 0.19 -26.29 16 10 H 0.07 3.32 5.97 -2.91 -0.02 3.31 16 11 C 0.02 0.96 5.46 84.66 0.46 1.42 16 12 N -0.93 -51.99 13.29 21.45 0.28 -51.71 16 13 Si 0.95 39.62 29.54 68.60 2.03 41.64 16 14 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 15 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 17 C 0.14 4.53 4.18 85.56 0.36 4.88 16 18 C -0.19 -6.50 4.66 -20.15 -0.09 -6.60 16 19 C 0.10 3.00 11.25 83.54 0.94 3.94 16 20 N -0.44 -12.09 7.36 -57.59 -0.42 -12.51 16 21 H 0.46 8.86 8.96 -213.33 -1.91 6.94 16 22 N -0.27 -8.95 12.63 -47.38 -0.60 -9.54 16 23 C -0.01 -0.45 6.56 43.10 0.28 -0.16 16 24 C 0.56 18.36 3.50 71.23 0.25 18.61 16 25 F -0.17 -4.98 17.30 44.97 0.78 -4.20 16 26 F -0.18 -6.12 17.25 44.97 0.78 -5.35 16 27 F -0.15 -5.31 14.84 44.97 0.67 -4.64 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.83 8.13 -2.39 -0.02 1.82 16 32 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 33 H 0.09 3.04 6.42 -2.39 -0.02 3.02 16 34 H 0.14 3.65 7.81 -2.39 -0.02 3.63 16 35 H -0.01 -0.78 6.58 -2.39 -0.02 -0.80 16 36 H 0.01 0.59 6.81 -2.39 -0.02 0.58 16 37 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.06 2.14 6.33 -2.38 -0.02 2.12 16 39 H 0.09 2.51 7.51 -2.38 -0.02 2.49 16 40 H 0.20 5.71 8.06 -2.91 -0.02 5.68 16 Total: -1.00 -68.57 352.46 4.41 -64.16 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.80 Total: 15.44 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 4.97 Total: 28.36 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -3.81 Total: -98.08 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.20 Total: -37.34 kcal Atomic # 9 Polarization: -16.41 SS G_CDS: 2.22 Total: -14.19 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.64 kcal Total: -68.57 4.41 -64.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141018244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.895 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds