Wall clock time and date at job start Tue Mar 31 2020 18:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 S 1.65599 * 119.99956 * 2 1 4 4 O 1.42103 * 104.27392 * 181.34779 * 3 2 1 5 5 O 1.42099 * 104.27494 * 309.20283 * 3 2 1 6 6 C 1.81391 * 104.45015 * 65.27483 * 3 2 1 7 7 C 1.50705 * 109.47059 * 180.02562 * 6 3 2 8 8 O 1.21282 * 120.00001 * 359.97438 * 7 6 3 9 9 N 1.34776 * 120.00013 * 180.02562 * 7 6 3 10 10 C 1.46503 * 120.00025 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47136 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.40338 * 304.99732 * 11 10 9 13 13 C 1.54290 * 109.40282 * 185.15906 * 11 10 9 14 14 N 1.48175 * 110.69482 * 200.49083 * 13 11 10 15 15 C 1.36941 * 118.51507 * 138.77710 * 14 13 11 16 16 H 1.07996 * 119.99968 * 206.12336 * 15 14 13 17 17 C 1.38807 * 119.99921 * 26.11644 * 15 14 13 18 18 N 1.31618 * 120.00325 * 15.51821 * 17 15 14 19 19 Si 1.86801 * 120.00245 * 195.52090 * 17 15 14 20 20 H 1.48509 * 109.46851 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47385 * 119.99926 * 19 17 15 22 22 H 1.48500 * 109.47425 * 240.00155 * 19 17 15 23 23 C 1.44462 * 122.97437 * 318.79997 * 14 13 11 24 24 C 1.54872 * 109.32979 * 88.90889 * 23 14 13 25 25 C 1.47693 * 109.67917 * 290.10655 * 24 23 14 26 26 O 1.40520 * 109.40353 * 64.83866 * 11 10 9 27 27 H 1.08995 * 109.47329 * 179.72942 * 1 2 3 28 28 H 1.09001 * 109.46907 * 299.72357 * 1 2 3 29 29 H 1.08996 * 109.47133 * 59.72305 * 1 2 3 30 30 H 0.97001 * 119.99698 * 180.27127 * 2 1 3 31 31 H 1.09005 * 109.47352 * 299.99777 * 6 3 2 32 32 H 1.09004 * 109.47499 * 60.00018 * 6 3 2 33 33 H 0.96997 * 119.99888 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.46881 * 299.99827 * 10 9 7 35 35 H 1.08996 * 109.47077 * 59.99679 * 10 9 7 36 36 H 1.09002 * 109.23435 * 320.81016 * 13 11 10 37 37 H 1.09002 * 109.22936 * 80.21995 * 13 11 10 38 38 H 0.97003 * 120.00641 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.49586 * 208.86808 * 23 14 13 40 40 H 1.09004 * 109.48983 * 328.95731 * 23 14 13 41 41 H 1.09006 * 109.43372 * 50.16531 * 24 23 14 42 42 H 1.08997 * 109.43608 * 170.04063 * 24 23 14 43 43 H 1.09006 * 108.64054 * 181.88110 * 25 24 23 44 44 H 1.08998 * 108.64247 * 299.71288 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 3.6606 1.0492 -0.0324 5 8 1.7144 2.1728 -1.0671 6 6 1.8831 2.1935 1.5955 7 6 2.5855 3.5215 1.7150 8 8 3.2933 3.9165 0.8129 9 7 2.4278 4.2697 2.8249 10 6 3.1110 5.5604 2.9413 11 6 2.7652 6.2010 4.2871 12 1 1.6821 6.2713 4.3869 13 6 3.3791 7.6149 4.3546 14 7 3.4995 8.0668 5.7606 15 6 4.6356 8.7315 6.1386 16 1 4.9591 8.7053 7.1687 17 6 5.3713 9.4388 5.1979 18 7 4.8389 9.7313 4.0303 19 14 7.1173 9.9756 5.5888 20 1 7.4788 9.5258 6.9572 21 1 8.0528 9.3714 4.6064 22 1 7.2087 11.4559 5.5136 23 6 2.4729 7.8377 6.7508 24 6 2.7194 6.4719 7.4382 25 6 2.4462 5.3783 6.4839 26 8 3.2795 5.4085 5.3273 27 1 -0.3634 -1.0276 -0.0049 28 1 -0.3633 0.5095 0.8925 29 1 -0.3633 0.5181 -0.8875 30 1 1.9500 -0.8401 -0.0040 31 1 0.8056 2.3457 1.6593 32 1 2.2058 1.5373 2.4039 33 1 1.8620 3.9536 3.5465 34 1 4.1885 5.4083 2.8772 35 1 2.7880 6.2167 2.1332 36 1 4.3681 7.5992 3.8965 37 1 2.7414 8.3097 3.8081 38 1 5.3529 10.2260 3.3729 39 1 2.5038 8.6314 7.4972 40 1 1.4961 7.8303 6.2670 41 1 3.7566 6.4142 7.7687 42 1 2.0588 6.3750 8.2997 43 1 2.5922 4.4261 6.9940 44 1 1.4055 5.4444 6.1668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150736832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:39 Heat of formation + Delta-G solvation = -152.603487 kcal Electronic energy + Delta-G solvation = -27813.173762 eV Core-core repulsion = 23699.713501 eV Total energy + Delta-G solvation = -4113.460261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16883 -40.20328 -38.24991 -37.07699 -36.92873 -36.20406 -35.83367 -34.21143 -33.08254 -31.72554 -30.04014 -27.09694 -27.00952 -26.76576 -24.30988 -22.45291 -22.05080 -21.44725 -20.46841 -19.10300 -18.90823 -18.14624 -17.94170 -17.80255 -17.35673 -17.09454 -16.62269 -16.53295 -16.18922 -15.81491 -15.58329 -15.32250 -14.83362 -14.68076 -14.50704 -14.23782 -14.14969 -13.87522 -13.75437 -13.58170 -13.30250 -13.22245 -13.14732 -13.04399 -12.80281 -12.49830 -12.41275 -12.31340 -12.17066 -12.00522 -11.85475 -11.58521 -11.39151 -11.35635 -10.58671 -10.48939 -10.34836 -10.27901 -8.68210 -7.87409 -5.31927 -0.91334 1.25958 1.41824 1.45813 1.54123 1.66375 2.01148 2.49862 2.81843 2.90532 3.18628 3.25068 3.35608 3.56287 3.93924 4.01772 4.11745 4.18446 4.21428 4.26913 4.27309 4.43967 4.56807 4.61280 4.72708 4.77302 4.83982 4.88979 4.94506 5.08195 5.13915 5.15322 5.23797 5.31096 5.52422 5.61393 5.70672 6.11859 6.21153 6.38743 6.56661 6.93593 7.16232 7.92850 8.29589 9.17306 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002684 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.692162 B =10430.527961 C =11354.346543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -1.111 6.111 3 S 2.648 3.352 4 O -0.993 6.993 5 O -0.987 6.987 6 C -0.651 4.651 7 C 0.526 3.474 8 O -0.593 6.593 9 N -0.689 5.689 10 C 0.127 3.873 11 C 0.077 3.923 12 H 0.082 0.918 13 C 0.171 3.829 14 N -0.603 5.603 15 C -0.257 4.257 16 H 0.062 0.938 17 C -0.049 4.049 18 N -0.933 5.933 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.295 1.295 22 H -0.291 1.291 23 C 0.147 3.853 24 C -0.171 4.171 25 C 0.067 3.933 26 O -0.378 6.378 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.428 0.572 31 H 0.208 0.792 32 H 0.205 0.795 33 H 0.423 0.577 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.013 0.987 38 H 0.248 0.752 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.040 0.960 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.556 -22.862 0.520 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.875 5.875 3 S 2.738 3.262 4 O -0.983 6.983 5 O -0.977 6.977 6 C -0.781 4.781 7 C 0.312 3.688 8 O -0.474 6.474 9 N -0.340 5.340 10 C 0.002 3.998 11 C 0.017 3.983 12 H 0.100 0.900 13 C 0.045 3.955 14 N -0.325 5.325 15 C -0.388 4.388 16 H 0.079 0.921 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.787 3.213 20 H -0.193 1.193 21 H -0.223 1.223 22 H -0.218 1.218 23 C 0.020 3.980 24 C -0.211 4.211 25 C -0.009 4.009 26 O -0.297 6.297 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.264 0.736 31 H 0.226 0.774 32 H 0.223 0.777 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.440 -22.102 -0.897 26.976 hybrid contribution 0.883 0.647 0.849 1.385 sum -14.557 -21.455 -0.048 25.927 Atomic orbital electron populations 1.21915 0.76860 1.06467 1.02997 1.55150 1.17069 1.23464 1.91781 1.03628 0.72626 0.73638 0.76313 1.93542 1.35450 1.81974 1.87313 1.93540 1.79189 1.73567 1.51375 1.30926 1.14875 1.04378 1.27968 1.19962 0.80772 0.85703 0.82377 1.90876 1.41766 1.73902 1.40899 1.45583 1.49304 1.19814 1.19306 1.21388 0.97374 0.84324 0.96738 1.22746 0.98003 0.91196 0.86340 0.90046 1.21386 0.99019 0.90000 0.85127 1.43827 1.17795 1.64252 1.06666 1.19455 1.01539 1.23056 0.94755 0.92065 1.25676 1.02481 0.98895 0.97424 1.70170 1.36538 1.43244 1.08037 0.85346 0.81129 0.77164 0.77661 1.19282 1.22265 1.21754 1.20931 0.90618 0.95277 0.91161 1.22156 1.01708 0.97517 0.99752 1.21611 0.93793 0.99044 0.86455 1.87462 1.50261 1.67456 1.24491 0.87208 0.89183 0.92489 0.73571 0.77448 0.77749 0.73867 0.92884 0.90303 0.94055 0.96908 0.94295 0.94169 0.93410 0.94085 0.88450 0.88374 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 11.04 127.77 1.41 1.65 16 2 N -1.11 -10.42 6.08 -206.53 -1.25 -11.68 16 3 S 2.65 54.20 4.60 -56.49 -0.26 53.95 16 4 O -0.99 -29.71 18.08 -127.64 -2.31 -32.02 16 5 O -0.99 -28.96 17.72 -127.64 -2.26 -31.23 16 6 C -0.65 -7.92 6.54 71.24 0.47 -7.45 16 7 C 0.53 13.59 7.85 87.66 0.69 14.28 16 8 O -0.59 -22.39 15.86 -3.03 -0.05 -22.44 16 9 N -0.69 -16.15 5.49 -463.04 -2.54 -18.69 16 10 C 0.13 4.16 5.24 86.38 0.45 4.61 16 11 C 0.08 2.60 2.35 31.03 0.07 2.68 16 12 H 0.08 2.23 7.20 -2.39 -0.02 2.21 16 13 C 0.17 7.99 4.50 86.49 0.39 8.38 16 14 N -0.60 -29.24 2.59 -696.47 -1.80 -31.04 16 15 C -0.26 -14.16 9.43 84.03 0.79 -13.37 16 16 H 0.06 3.34 7.88 -2.91 -0.02 3.31 16 17 C -0.05 -2.81 4.88 84.86 0.41 -2.40 16 18 N -0.93 -55.65 10.98 21.65 0.24 -55.41 16 19 Si 0.96 46.37 29.58 68.60 2.03 48.40 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 C 0.15 5.54 5.68 87.40 0.50 6.04 16 24 C -0.17 -5.09 6.03 29.57 0.18 -4.91 16 25 C 0.07 1.68 6.04 70.32 0.42 2.10 16 26 O -0.38 -12.61 9.77 -144.88 -1.42 -14.03 16 27 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.09 -0.20 7.77 -2.39 -0.02 -0.22 16 29 H 0.06 0.41 8.03 -2.39 -0.02 0.39 16 30 H 0.43 2.70 8.92 -96.74 -0.86 1.84 16 31 H 0.21 0.42 7.79 -2.39 -0.02 0.40 16 32 H 0.21 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.42 6.29 8.46 -92.71 -0.78 5.51 16 34 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.04 2.27 6.24 -2.39 -0.01 2.26 16 37 H 0.01 0.65 8.02 -2.39 -0.02 0.63 16 38 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 39 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 40 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.07 1.30 7.27 -2.39 -0.02 1.28 16 Total: -1.00 -91.54 370.60 -4.46 -96.00 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -0.62 Total: 6.58 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.78 Total: 11.61 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -5.36 Total: -116.83 kcal Atomic # 8 Polarization: -93.67 SS G_CDS: -6.03 Total: -99.71 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.26 Total: 53.95 kcal Total: -91.54 -4.46 -96.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150736832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.600 kcal (2) G-P(sol) polarization free energy of solvation -91.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds