Wall clock time and date at job start Tue Mar 31 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00080 * 2 1 4 4 O 1.20823 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00078 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47243 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47236 * 179.97438 * 6 5 3 8 8 C 1.36809 * 120.00227 * 270.00382 * 7 6 5 9 9 H 1.07996 * 119.99936 * 19.67929 * 8 7 6 10 10 C 1.39079 * 120.00177 * 199.68331 * 8 7 6 11 11 N 1.31344 * 119.99664 * 13.20023 * 10 8 7 12 12 Si 1.86797 * 120.00384 * 193.20879 * 10 8 7 13 13 H 1.48502 * 109.47322 * 89.99664 * 12 10 8 14 14 H 1.48500 * 109.47399 * 209.99754 * 12 10 8 15 15 H 1.48508 * 109.46867 * 329.99795 * 12 10 8 16 16 C 1.34777 * 119.99885 * 90.00216 * 7 6 5 17 17 O 1.21607 * 120.00174 * 233.17800 * 16 7 6 18 18 C 1.47667 * 120.00014 * 53.17165 * 16 7 6 19 19 N 1.32897 * 119.79801 * 356.87629 * 18 16 7 20 20 C 1.31395 * 121.69750 * 179.97438 * 19 18 16 21 21 C 1.38767 * 121.10575 * 359.96805 * 20 19 18 22 22 C 1.38317 * 119.47548 * 0.30663 * 21 20 19 23 23 C 1.39440 * 118.43088 * 359.45601 * 22 21 20 24 24 N 1.39279 * 120.55383 * 180.26288 * 23 22 21 25 25 C 1.34778 * 119.99692 * 36.25842 * 24 23 22 26 26 C 1.50701 * 119.99601 * 184.56370 * 25 24 23 27 27 O 1.21273 * 120.00490 * 4.56864 * 25 24 23 28 28 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46484 * 299.99941 * 1 2 3 30 30 H 1.08996 * 109.47137 * 59.99495 * 1 2 3 31 31 H 1.08998 * 109.47356 * 60.00097 * 5 3 2 32 32 H 1.09001 * 109.47122 * 299.99959 * 5 3 2 33 33 H 1.08998 * 109.46709 * 59.99891 * 6 5 3 34 34 H 1.08997 * 109.46826 * 299.99750 * 6 5 3 35 35 H 0.97006 * 119.99940 * 184.98558 * 11 10 8 36 36 H 1.08000 * 119.45027 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.26795 * 180.02562 * 21 20 19 38 38 H 1.07996 * 120.78124 * 179.69871 * 22 21 20 39 39 H 0.96998 * 119.99918 * 216.25139 * 24 23 22 40 40 H 1.09006 * 109.47135 * 60.00515 * 26 25 24 41 41 H 1.09004 * 109.46798 * 179.97438 * 26 25 24 42 42 H 1.08999 * 109.47579 * 300.00270 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1463 2.8549 1.1837 9 1 5.6707 2.5149 2.0918 10 6 7.4531 3.3297 1.2188 11 7 7.9439 3.9786 0.1877 12 14 8.5102 3.0442 2.7322 13 1 9.2437 1.7610 2.5889 14 1 9.4831 4.1573 2.8736 15 1 7.6443 2.9876 3.9374 16 6 6.1362 2.8536 -1.1682 17 8 7.0298 2.0562 -1.3790 18 6 5.7883 3.8601 -2.1913 19 7 4.7707 4.6890 -1.9831 20 6 4.4291 5.5987 -2.8675 21 6 5.1217 5.7325 -4.0625 22 6 6.1857 4.8902 -4.3304 23 6 6.5337 3.9357 -3.3752 24 7 7.6009 3.0687 -3.5969 25 6 8.6993 3.5040 -4.2453 26 6 9.8102 2.5408 -4.5760 27 8 8.7938 4.6706 -4.5625 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 3.6107 3.2364 0.8889 34 1 3.6101 3.2359 -0.8911 35 1 8.8762 4.2464 0.1823 36 1 3.5954 6.2534 -2.6610 37 1 4.8296 6.4852 -4.7797 38 1 6.7364 4.9725 -5.2558 39 1 7.5536 2.1516 -3.2845 40 1 9.4244 1.7468 -5.2154 41 1 10.6076 3.0710 -5.0968 42 1 10.2020 2.1080 -3.6555 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152128938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:51 Heat of formation + Delta-G solvation = -88.771641 kcal Electronic energy + Delta-G solvation = -29749.631076 eV Core-core repulsion = 25503.494821 eV Total energy + Delta-G solvation = -4246.136256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45931 -40.19670 -38.79601 -37.86765 -36.38477 -35.11443 -34.10246 -32.45296 -31.69797 -30.60996 -30.18314 -28.45830 -27.56800 -25.36446 -24.10628 -23.24514 -22.59904 -20.58302 -20.04999 -19.80025 -17.54265 -17.42827 -17.33109 -16.58146 -16.38187 -16.32387 -15.93810 -15.41775 -15.12557 -14.69316 -14.32207 -14.17587 -13.91226 -13.60408 -13.58670 -13.40009 -12.92935 -12.74106 -12.46983 -12.44327 -12.29273 -12.15596 -11.91027 -11.77478 -11.52365 -11.30832 -11.01823 -10.72782 -10.67516 -10.62140 -10.31191 -10.24981 -10.14429 -9.74665 -9.22989 -9.12894 -8.98802 -8.40771 -7.71116 -7.48334 -6.29633 -3.72700 1.34312 1.75407 2.45634 2.88297 2.97883 3.22885 3.29600 3.31706 3.56773 3.75962 4.19161 4.54475 4.77946 4.99817 5.07568 5.10857 5.15342 5.17232 5.19450 5.32228 5.42551 5.48371 5.49965 5.55753 5.58316 5.63485 5.76400 5.82146 6.02611 6.06690 6.13966 6.44361 6.52028 6.54183 6.56780 6.74249 6.89536 7.28814 7.41455 7.85239 7.95612 7.99146 8.48364 8.53254 8.85928 9.12865 9.41247 9.89989 10.81535 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004996 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.124940 B = 5602.861951 C = 7406.400880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.466 3.534 4 O -0.507 6.507 5 C -0.132 4.132 6 C 0.133 3.867 7 N -0.489 5.489 8 C -0.293 4.293 9 H 0.090 0.910 10 C 0.030 3.970 11 N -0.854 5.854 12 Si 0.923 3.077 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.598 3.402 17 O -0.535 6.535 18 C 0.095 3.905 19 N -0.435 5.435 20 C 0.073 3.927 21 C -0.161 4.161 22 C -0.092 4.092 23 C 0.139 3.861 24 N -0.643 5.643 25 C 0.511 3.489 26 C -0.170 4.170 27 O -0.544 6.544 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.271 0.729 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.424 0.576 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 -5.547 -7.014 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.394 6.394 5 C -0.171 4.171 6 C 0.007 3.993 7 N -0.211 5.211 8 C -0.420 4.420 9 H 0.108 0.892 10 C -0.175 4.175 11 N -0.493 5.493 12 Si 0.750 3.250 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.198 1.198 16 C 0.388 3.612 17 O -0.412 6.412 18 C -0.047 4.047 19 N -0.147 5.147 20 C -0.088 4.088 21 C -0.182 4.182 22 C -0.120 4.120 23 C 0.039 3.961 24 N -0.293 5.293 25 C 0.300 3.700 26 C -0.229 4.229 27 O -0.422 6.422 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.268 0.732 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.063 -4.883 -6.558 10.804 hybrid contribution 0.909 -0.070 0.203 0.934 sum -6.154 -4.953 -6.354 10.138 Atomic orbital electron populations 1.23193 0.77136 1.03197 1.02378 1.86548 1.22899 1.34259 1.84467 1.24056 0.92346 0.80968 0.71761 1.90651 1.67321 1.36205 1.45234 1.22094 0.85744 1.03359 1.05929 1.21086 0.83182 0.90760 1.04253 1.42508 1.02645 1.71518 1.04407 1.19381 0.97519 1.39441 0.85696 0.89192 1.25129 0.98726 0.95108 0.98583 1.69387 1.14474 1.33901 1.31557 0.85987 0.79925 0.77873 0.81201 1.20521 1.21235 1.19753 1.16643 0.81682 0.82651 0.80192 1.90309 1.34345 1.39335 1.77213 1.21969 0.93437 0.97791 0.91458 1.67769 1.14016 1.03139 1.29728 1.22677 0.99424 0.96264 0.90403 1.21999 0.96660 1.00277 0.99282 1.21410 0.96350 0.95386 0.98821 1.18598 0.90209 0.94090 0.93217 1.43650 1.14428 1.15707 1.55517 1.20917 0.83055 0.89248 0.76829 1.21867 0.97308 0.99637 1.04126 1.90682 1.79780 1.18427 1.53309 0.88528 0.92075 0.92111 0.88302 0.87353 0.90922 0.89556 0.91759 0.83075 0.85191 0.84527 0.73242 0.89453 0.89120 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.09 10.57 -39.25 -0.41 -5.50 16 3 C 0.47 7.49 7.96 36.01 0.29 7.77 16 4 O -0.51 -9.23 15.73 -18.75 -0.29 -9.52 16 5 C -0.13 -2.22 6.14 -27.88 -0.17 -2.39 16 6 C 0.13 2.70 4.55 -4.04 -0.02 2.68 16 7 N -0.49 -11.78 2.50 -115.95 -0.29 -12.07 16 8 C -0.29 -7.57 9.57 -15.02 -0.14 -7.72 16 9 H 0.09 2.18 7.87 -52.49 -0.41 1.77 16 10 C 0.03 0.80 5.02 -17.45 -0.09 0.71 16 11 N -0.85 -24.16 10.88 55.50 0.60 -23.56 16 12 Si 0.92 20.91 29.58 -169.99 -5.03 15.89 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 16 C 0.60 14.70 4.49 -12.41 -0.06 14.64 16 17 O -0.54 -13.67 13.45 5.27 0.07 -13.59 16 18 C 0.10 2.16 6.58 -82.86 -0.55 1.61 16 19 N -0.44 -9.24 7.85 -9.69 -0.08 -9.32 16 20 C 0.07 1.27 11.17 -17.54 -0.20 1.08 16 21 C -0.16 -2.58 10.10 -39.36 -0.40 -2.98 16 22 C -0.09 -1.67 8.75 -39.10 -0.34 -2.02 16 23 C 0.14 2.88 6.24 -83.33 -0.52 2.36 16 24 N -0.64 -12.29 4.63 -9.59 -0.04 -12.33 16 25 C 0.51 9.17 7.69 -10.98 -0.08 9.08 16 26 C -0.17 -2.13 10.32 36.01 0.37 -1.76 16 27 O -0.54 -11.45 14.98 5.56 0.08 -11.37 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.07 1.50 8.00 -51.93 -0.42 1.08 16 34 H 0.09 1.78 5.83 -51.93 -0.30 1.48 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.14 2.37 6.72 -52.49 -0.35 2.02 16 39 H 0.42 7.89 6.41 -40.82 -0.26 7.63 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.04 8.12 -51.93 -0.42 0.61 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -34.25 364.96 -5.83 -40.08 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.11 Total: 11.30 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: -0.84 Total: 24.50 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.19 Total: -57.28 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.56 Total: -39.98 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.25 -5.83 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152128938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.694 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds