Wall clock time and date at job start Tue Mar 31 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00080 * 2 1 4 4 O 1.20823 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00078 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47243 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47236 * 179.97438 * 6 5 3 8 8 C 1.36809 * 120.00227 * 270.00382 * 7 6 5 9 9 H 1.07996 * 119.99936 * 19.67929 * 8 7 6 10 10 C 1.39079 * 120.00177 * 199.68331 * 8 7 6 11 11 N 1.31344 * 119.99664 * 13.20023 * 10 8 7 12 12 Si 1.86797 * 120.00384 * 193.20879 * 10 8 7 13 13 H 1.48502 * 109.47322 * 89.99664 * 12 10 8 14 14 H 1.48500 * 109.47399 * 209.99754 * 12 10 8 15 15 H 1.48508 * 109.46867 * 329.99795 * 12 10 8 16 16 C 1.34777 * 119.99885 * 90.00216 * 7 6 5 17 17 O 1.21607 * 120.00174 * 233.17800 * 16 7 6 18 18 C 1.47667 * 120.00014 * 53.17165 * 16 7 6 19 19 N 1.32897 * 119.79801 * 356.87629 * 18 16 7 20 20 C 1.31395 * 121.69750 * 179.97438 * 19 18 16 21 21 C 1.38767 * 121.10575 * 359.96805 * 20 19 18 22 22 C 1.38317 * 119.47548 * 0.30663 * 21 20 19 23 23 C 1.39440 * 118.43088 * 359.45601 * 22 21 20 24 24 N 1.39279 * 120.55383 * 180.26288 * 23 22 21 25 25 C 1.34778 * 119.99692 * 36.25842 * 24 23 22 26 26 C 1.50701 * 119.99601 * 184.56370 * 25 24 23 27 27 O 1.21273 * 120.00490 * 4.56864 * 25 24 23 28 28 H 1.09003 * 109.46981 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46484 * 299.99941 * 1 2 3 30 30 H 1.08996 * 109.47137 * 59.99495 * 1 2 3 31 31 H 1.08998 * 109.47356 * 60.00097 * 5 3 2 32 32 H 1.09001 * 109.47122 * 299.99959 * 5 3 2 33 33 H 1.08998 * 109.46709 * 59.99891 * 6 5 3 34 34 H 1.08997 * 109.46826 * 299.99750 * 6 5 3 35 35 H 0.97006 * 119.99940 * 184.98558 * 11 10 8 36 36 H 1.08000 * 119.45027 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.26795 * 180.02562 * 21 20 19 38 38 H 1.07996 * 120.78124 * 179.69871 * 22 21 20 39 39 H 0.96998 * 119.99918 * 216.25139 * 24 23 22 40 40 H 1.09006 * 109.47135 * 60.00515 * 26 25 24 41 41 H 1.09004 * 109.46798 * 179.97438 * 26 25 24 42 42 H 1.08999 * 109.47579 * 300.00270 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1463 2.8549 1.1837 9 1 5.6707 2.5149 2.0918 10 6 7.4531 3.3297 1.2188 11 7 7.9439 3.9786 0.1877 12 14 8.5102 3.0442 2.7322 13 1 9.2437 1.7610 2.5889 14 1 9.4831 4.1573 2.8736 15 1 7.6443 2.9876 3.9374 16 6 6.1362 2.8536 -1.1682 17 8 7.0298 2.0562 -1.3790 18 6 5.7883 3.8601 -2.1913 19 7 4.7707 4.6890 -1.9831 20 6 4.4291 5.5987 -2.8675 21 6 5.1217 5.7325 -4.0625 22 6 6.1857 4.8902 -4.3304 23 6 6.5337 3.9357 -3.3752 24 7 7.6009 3.0687 -3.5969 25 6 8.6993 3.5040 -4.2453 26 6 9.8102 2.5408 -4.5760 27 8 8.7938 4.6706 -4.5625 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 3.6107 3.2364 0.8889 34 1 3.6101 3.2359 -0.8911 35 1 8.8762 4.2464 0.1823 36 1 3.5954 6.2534 -2.6610 37 1 4.8296 6.4852 -4.7797 38 1 6.7364 4.9725 -5.2558 39 1 7.5536 2.1516 -3.2845 40 1 9.4244 1.7468 -5.2154 41 1 10.6076 3.0710 -5.0968 42 1 10.2020 2.1080 -3.6555 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152128938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:50 Heat of formation + Delta-G solvation = -111.672260 kcal Electronic energy + Delta-G solvation = -29750.624122 eV Core-core repulsion = 25503.494821 eV Total energy + Delta-G solvation = -4247.129301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96882 -41.46411 -40.34340 -39.52012 -37.64111 -36.76614 -35.70562 -34.27166 -33.15990 -32.02050 -31.71224 -29.76668 -28.60400 -27.17060 -25.63038 -24.71435 -24.12536 -22.00890 -21.46873 -21.42191 -19.26004 -18.80060 -18.74419 -18.00557 -17.62187 -17.58811 -17.49586 -16.97372 -16.88428 -16.20259 -15.77046 -15.73898 -15.52541 -15.04568 -15.00357 -14.81043 -14.27670 -14.16407 -13.77378 -13.72260 -13.57860 -13.39527 -13.32120 -13.12011 -13.09716 -12.87464 -12.76164 -12.55891 -12.22664 -12.04372 -11.78674 -11.69309 -11.58210 -11.21954 -11.06450 -10.74687 -10.54646 -10.08062 -9.34464 -9.23495 -8.25662 -5.72527 -0.17114 0.29783 1.17078 1.41822 1.45664 1.54043 1.58292 1.70786 2.01276 2.24050 2.41332 2.90832 3.12605 3.31885 3.61268 3.77755 3.84544 4.01381 4.07661 4.11277 4.14761 4.27749 4.35436 4.37233 4.40653 4.53429 4.60285 4.64488 4.66669 4.74090 4.89436 4.99960 5.05953 5.14531 5.21994 5.37042 5.39113 5.42886 5.82834 6.00889 6.45304 6.73350 6.90406 6.98503 7.08678 7.30255 7.57649 8.03079 8.84307 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004996 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.124940 B = 5602.861951 C = 7406.400880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.476 3.524 4 O -0.531 6.531 5 C -0.123 4.123 6 C 0.139 3.861 7 N -0.508 5.508 8 C -0.305 4.305 9 H 0.099 0.901 10 C -0.022 4.022 11 N -0.893 5.893 12 Si 0.985 3.015 13 H -0.281 1.281 14 H -0.294 1.294 15 H -0.256 1.256 16 C 0.602 3.398 17 O -0.557 6.557 18 C 0.057 3.943 19 N -0.458 5.458 20 C 0.067 3.933 21 C -0.134 4.134 22 C -0.101 4.101 23 C 0.125 3.875 24 N -0.646 5.646 25 C 0.503 3.497 26 C -0.160 4.160 27 O -0.580 6.580 28 H 0.133 0.867 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.260 0.740 36 H 0.189 0.811 37 H 0.179 0.821 38 H 0.146 0.854 39 H 0.423 0.577 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -5.891 -7.936 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.320 3.680 4 O -0.421 6.421 5 C -0.162 4.162 6 C 0.014 3.986 7 N -0.232 5.232 8 C -0.433 4.433 9 H 0.116 0.884 10 C -0.223 4.223 11 N -0.534 5.534 12 Si 0.811 3.189 13 H -0.207 1.207 14 H -0.221 1.221 15 H -0.180 1.180 16 C 0.393 3.607 17 O -0.435 6.435 18 C -0.083 4.083 19 N -0.169 5.169 20 C -0.095 4.095 21 C -0.154 4.154 22 C -0.128 4.128 23 C 0.025 3.975 24 N -0.295 5.295 25 C 0.294 3.706 26 C -0.219 4.219 27 O -0.460 6.460 28 H 0.151 0.849 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.206 0.794 37 H 0.197 0.803 38 H 0.164 0.836 39 H 0.267 0.733 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.211 -5.272 -7.469 12.288 hybrid contribution 1.068 0.068 0.323 1.118 sum -7.143 -5.204 -7.145 11.365 Atomic orbital electron populations 1.23572 0.74707 1.05725 1.02614 1.86517 1.25174 1.32646 1.83806 1.23686 0.91815 0.81282 0.71202 1.90643 1.67717 1.37138 1.46579 1.21844 0.86887 1.01039 1.06453 1.21036 0.81243 0.92843 1.03435 1.42629 1.03896 1.72690 1.03952 1.19712 0.97840 1.38962 0.86747 0.88373 1.25960 0.99992 0.95201 1.01103 1.69568 1.13885 1.36371 1.33605 0.85024 0.78186 0.76998 0.78741 1.20732 1.22059 1.17986 1.17073 0.80787 0.82132 0.80699 1.90262 1.34831 1.40249 1.78126 1.21706 0.95623 0.98797 0.92208 1.67690 1.14075 1.03900 1.31260 1.23387 1.00262 0.95623 0.90206 1.22527 0.94307 0.99346 0.99212 1.21671 0.97199 0.95262 0.98715 1.18901 0.90450 0.94891 0.93308 1.43789 1.14694 1.15524 1.55539 1.21902 0.83418 0.89677 0.75620 1.21910 0.95642 0.99355 1.04949 1.90647 1.80438 1.20154 1.54792 0.84897 0.91891 0.91903 0.87909 0.86730 0.91883 0.90097 0.93028 0.79374 0.80330 0.83621 0.73326 0.86061 0.87760 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.37 -9.62 10.57 -51.39 -0.54 -10.16 16 3 C 0.48 15.03 7.96 71.24 0.57 15.60 16 4 O -0.53 -19.15 15.73 21.97 0.35 -18.81 16 5 C -0.12 -4.16 6.14 29.85 0.18 -3.98 16 6 C 0.14 5.78 4.55 86.38 0.39 6.17 16 7 N -0.51 -25.20 2.50 -639.02 -1.60 -26.80 16 8 C -0.31 -16.12 9.57 84.12 0.80 -15.31 16 9 H 0.10 4.83 7.87 -2.91 -0.02 4.81 16 10 C -0.02 -1.19 5.02 84.97 0.43 -0.77 16 11 N -0.89 -52.38 10.88 21.69 0.24 -52.15 16 12 Si 0.98 43.95 29.58 68.60 2.03 45.98 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 16 C 0.60 30.53 4.49 86.73 0.39 30.92 16 17 O -0.56 -29.46 13.45 -4.05 -0.05 -29.51 16 18 C 0.06 2.63 6.58 41.93 0.28 2.90 16 19 N -0.46 -19.46 7.85 -184.57 -1.45 -20.91 16 20 C 0.07 2.18 11.17 84.88 0.95 3.13 16 21 C -0.13 -3.89 10.10 22.42 0.23 -3.66 16 22 C -0.10 -3.55 8.75 22.58 0.20 -3.35 16 23 C 0.12 5.22 6.24 38.70 0.24 5.46 16 24 N -0.65 -25.09 4.63 -302.63 -1.40 -26.49 16 25 C 0.50 17.99 7.69 87.66 0.67 18.66 16 26 C -0.16 -3.78 10.32 71.24 0.74 -3.04 16 27 O -0.58 -24.41 14.98 -3.01 -0.05 -24.45 16 28 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.15 8.13 -2.38 -0.02 1.13 16 30 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 31 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.06 2.67 8.00 -2.39 -0.02 2.65 16 34 H 0.08 3.42 5.83 -2.39 -0.01 3.41 16 35 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 36 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 38 H 0.15 4.85 6.72 -2.91 -0.02 4.83 16 39 H 0.42 16.22 6.41 -92.71 -0.59 15.63 16 40 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.10 2.19 8.12 -2.38 -0.02 2.18 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -77.51 364.96 5.26 -72.25 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.48 Total: 36.64 kcal Atomic # 6 Polarization: 47.15 SS G_CDS: 7.26 Total: 54.41 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -4.21 Total: -126.34 kcal Atomic # 8 Polarization: -82.64 SS G_CDS: -0.30 Total: -82.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -77.51 5.26 -72.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152128938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.426 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds