Wall clock time and date at job start Tue Mar 31 2020 18:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47060 * 2 1 4 4 C 1.36935 * 119.99857 * 84.27635 * 3 2 1 5 5 H 1.08006 * 120.00072 * 28.84540 * 4 3 2 6 6 C 1.38813 * 120.00228 * 209.11332 * 4 3 2 7 7 N 1.31619 * 119.99887 * 18.62832 * 6 4 3 8 8 Si 1.86799 * 120.00399 * 198.62110 * 6 4 3 9 9 H 1.48507 * 109.46931 * 90.00069 * 8 6 4 10 10 H 1.48499 * 109.47345 * 210.00361 * 8 6 4 11 11 H 1.48498 * 109.47177 * 330.00803 * 8 6 4 12 12 C 1.46507 * 120.00446 * 264.27559 * 3 2 1 13 13 H 1.08997 * 109.47003 * 183.52605 * 12 3 2 14 14 C 1.52996 * 109.46686 * 63.52677 * 12 3 2 15 15 C 1.52998 * 109.46748 * 303.52939 * 12 3 2 16 16 N 1.46495 * 109.47270 * 304.99353 * 15 12 3 17 17 C 1.34777 * 120.00277 * 180.02562 * 16 15 12 18 18 O 1.21612 * 119.99716 * 0.02562 * 17 16 15 19 19 C 1.47417 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.36069 * 126.44619 * 359.68529 * 19 17 16 21 21 C 1.29933 * 108.47526 * 179.86085 * 20 19 17 22 22 O 1.34057 * 109.24549 * 0.40881 * 21 20 19 23 23 C 1.34258 * 108.22343 * 359.74831 * 22 21 20 24 24 C 1.50699 * 126.52265 * 179.97438 * 23 22 21 25 25 F 1.39898 * 109.47130 * 270.03484 * 24 23 22 26 26 F 1.39899 * 109.47297 * 30.03697 * 24 23 22 27 27 F 1.39905 * 109.47008 * 150.03771 * 24 23 22 28 28 H 1.08996 * 109.46609 * 299.99549 * 1 2 3 29 29 H 1.08993 * 109.47111 * 59.99776 * 1 2 3 30 30 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46901 * 240.00387 * 2 1 3 32 32 H 1.08994 * 109.47541 * 120.00541 * 2 1 3 33 33 H 0.96997 * 120.00280 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47599 * 300.00199 * 14 12 3 35 35 H 1.08997 * 109.47525 * 60.00536 * 14 12 3 36 36 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 37 37 H 1.09001 * 109.47327 * 65.00127 * 15 12 3 38 38 H 1.09000 * 109.46821 * 184.99588 * 15 12 3 39 39 H 0.97002 * 120.00005 * 0.02562 * 16 15 12 40 40 H 1.08002 * 125.38305 * 180.11999 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0661 1.1800 5 1 2.3294 1.5312 2.0980 6 6 1.9981 3.4474 1.1973 7 7 1.4074 4.0627 0.1949 8 14 2.6518 4.4328 2.6433 9 1 4.0597 4.8245 2.3792 10 1 1.8245 5.6525 2.8256 11 1 2.5911 3.6048 3.8745 12 6 2.3819 2.0298 -1.2624 13 1 2.7791 3.0241 -1.0588 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1929 -1.9783 16 7 4.5830 0.9792 -1.0823 17 6 5.6457 0.2643 -1.5019 18 8 5.6592 -0.2029 -2.6246 19 6 6.7918 0.0488 -0.6001 20 7 6.9175 0.5136 0.6726 21 6 8.0612 0.1169 1.1447 22 8 8.7029 -0.5954 0.2077 23 6 7.9257 -0.6474 -0.8858 24 6 8.2479 -1.3437 -2.1828 25 9 8.9113 -0.4558 -3.0365 26 9 9.0691 -2.4473 -1.9282 27 9 7.0623 -1.7743 -2.7880 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.3113 5.0278 0.2071 34 1 0.7443 1.1537 -2.3541 35 1 0.3850 2.7442 -1.6405 36 1 1.4121 2.6301 -3.0900 37 1 3.0182 0.2300 -2.2609 38 1 3.7787 1.7185 -2.8725 39 1 4.5724 1.3522 -0.1869 40 1 8.4377 0.3314 2.1340 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154083438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:23 Heat of formation + Delta-G solvation = -128.812993 kcal Electronic energy + Delta-G solvation = -30462.219459 eV Core-core repulsion = 25672.490140 eV Total energy + Delta-G solvation = -4789.729319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -50.30360 -47.88656 -47.69792 -43.88475 -39.30094 -36.97417 -35.27970 -33.86518 -31.87329 -31.78562 -30.83928 -28.32861 -27.07572 -25.55573 -24.08498 -23.65888 -22.41052 -21.62169 -20.51069 -19.51174 -18.96906 -18.79119 -18.41918 -17.73201 -17.06880 -16.88543 -16.08889 -15.63517 -15.00107 -14.74384 -14.71583 -14.61168 -14.29420 -14.22364 -14.12833 -13.93740 -13.84763 -13.64574 -13.30600 -12.80771 -12.76224 -12.44503 -11.98205 -11.74793 -11.57167 -11.43869 -11.30895 -11.17727 -11.03504 -10.82162 -10.51784 -10.28794 -9.93685 -9.86427 -9.76007 -9.59944 -9.52806 -8.58338 -8.49178 -6.75328 -5.86895 -3.30275 0.40463 1.46829 1.78218 2.72152 3.21808 3.29360 3.33525 3.42026 3.42196 3.46545 3.73701 4.07005 4.12931 4.43918 4.59728 4.95516 5.07079 5.28507 5.36615 5.64811 5.84554 6.06718 6.12066 6.27911 6.42253 6.47953 6.53846 6.67338 6.69164 6.77027 6.87928 6.96497 7.00676 7.26393 7.49679 7.59616 7.78711 7.94378 8.39612 8.46075 9.15888 9.78117 10.32173 11.20347 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.003921 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.559457 B = 7138.766481 C = 8139.632185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.256 4.256 5 H 0.067 0.933 6 C 0.008 3.992 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.280 1.280 12 C 0.176 3.824 13 H 0.104 0.896 14 C -0.142 4.142 15 C 0.098 3.902 16 N -0.673 5.673 17 C 0.573 3.427 18 O -0.530 6.530 19 C 0.032 3.968 20 N -0.454 5.454 21 C 0.217 3.783 22 O -0.175 6.175 23 C -0.099 4.099 24 C 0.566 3.434 25 F -0.162 7.162 26 F -0.171 7.171 27 F -0.122 7.122 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.421 0.579 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.915 -8.396 -1.258 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.084 0.916 6 C -0.192 4.192 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.220 1.220 11 H -0.205 1.205 12 C 0.069 3.931 13 H 0.122 0.878 14 C -0.202 4.202 15 C -0.027 4.027 16 N -0.323 5.323 17 C 0.355 3.645 18 O -0.408 6.408 19 C -0.091 4.091 20 N -0.182 5.182 21 C -0.010 4.010 22 O -0.061 6.061 23 C -0.156 4.156 24 C 0.511 3.489 25 F -0.143 7.143 26 F -0.153 7.153 27 F -0.103 7.103 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.260 0.740 40 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 12.425 -8.190 -1.755 14.985 hybrid contribution 0.773 0.401 0.973 1.306 sum 13.197 -7.789 -0.782 15.344 Atomic orbital electron populations 1.22388 0.99725 0.98360 1.02113 1.20797 0.91972 0.87560 0.98114 1.44016 1.73752 1.09763 1.02957 1.19158 1.42867 0.89245 0.87271 0.91571 1.25025 0.98867 0.97832 0.97426 1.70008 1.42852 1.08541 1.32321 0.86369 0.78604 0.79728 0.82531 1.21412 1.21960 1.20515 1.20538 0.90880 0.96658 0.85038 0.87802 1.22114 1.00459 0.99619 0.97991 1.22302 0.86726 1.01014 0.92628 1.45821 1.16211 1.50664 1.19554 1.16801 0.81597 0.80561 0.85503 1.90898 1.80390 1.50694 1.18812 1.22087 0.95965 0.98222 0.92778 1.71086 1.18191 1.21695 1.07259 1.28563 0.87243 0.89774 0.95465 1.84360 1.43752 1.57976 1.20058 1.23108 0.93799 1.08475 0.90221 1.16454 0.75640 0.76172 0.80679 1.93272 1.80887 1.68417 1.71702 1.93243 1.73231 1.54693 1.94099 1.93465 1.44541 1.89249 1.83062 0.92890 0.93127 0.95364 0.94470 0.94571 0.93630 0.95110 0.89994 0.95097 0.92241 0.92116 0.74040 0.71571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.02 37.16 0.37 -2.81 16 2 C 0.14 2.83 5.73 -4.04 -0.02 2.81 16 3 N -0.58 -12.92 1.84 -165.66 -0.30 -13.23 16 4 C -0.26 -6.31 9.50 -15.06 -0.14 -6.45 16 5 H 0.07 1.66 7.90 -52.48 -0.41 1.24 16 6 C 0.01 0.20 4.84 -17.43 -0.08 0.11 16 7 N -0.89 -23.41 10.24 55.49 0.57 -22.84 16 8 Si 0.90 20.36 29.59 -169.99 -5.03 15.33 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.18 3.72 1.93 -67.93 -0.13 3.59 16 13 H 0.10 2.51 5.93 -51.93 -0.31 2.20 16 14 C -0.14 -2.88 8.25 37.16 0.31 -2.57 16 15 C 0.10 1.85 4.85 -4.05 -0.02 1.83 16 16 N -0.67 -12.49 5.38 -61.39 -0.33 -12.82 16 17 C 0.57 10.31 7.76 -12.52 -0.10 10.21 16 18 O -0.53 -10.30 13.14 5.27 0.07 -10.23 16 19 C 0.03 0.50 6.96 -83.02 -0.58 -0.07 16 20 N -0.45 -6.33 11.06 -11.48 -0.13 -6.46 16 21 C 0.22 2.03 13.19 51.96 0.69 2.71 16 22 O -0.18 -1.93 10.72 6.49 0.07 -1.86 16 23 C -0.10 -1.35 6.75 -35.08 -0.24 -1.59 16 24 C 0.57 7.70 3.34 36.01 0.12 7.82 16 25 F -0.16 -2.20 17.30 2.25 0.04 -2.17 16 26 F -0.17 -2.10 17.30 2.25 0.04 -2.06 16 27 F -0.12 -1.92 13.48 2.25 0.03 -1.89 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.99 6.03 -51.93 -0.31 0.67 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 32 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 35 H 0.08 1.90 7.22 -51.93 -0.37 1.52 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 1.13 6.76 -51.93 -0.35 0.77 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.42 8.23 7.81 -40.82 -0.32 7.92 16 40 H 0.27 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -28.41 346.03 -4.01 -32.42 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.42 Total: 5.00 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 0.17 Total: 15.60 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.19 Total: -55.35 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.14 Total: -12.09 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.11 Total: -6.11 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.41 -4.01 -32.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154083438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.394 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds