Wall clock time and date at job start Tue Mar 31 2020 18:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47060 * 2 1 4 4 C 1.36935 * 119.99857 * 84.27635 * 3 2 1 5 5 H 1.08006 * 120.00072 * 28.84540 * 4 3 2 6 6 C 1.38813 * 120.00228 * 209.11332 * 4 3 2 7 7 N 1.31619 * 119.99887 * 18.62832 * 6 4 3 8 8 Si 1.86799 * 120.00399 * 198.62110 * 6 4 3 9 9 H 1.48507 * 109.46931 * 90.00069 * 8 6 4 10 10 H 1.48499 * 109.47345 * 210.00361 * 8 6 4 11 11 H 1.48498 * 109.47177 * 330.00803 * 8 6 4 12 12 C 1.46507 * 120.00446 * 264.27559 * 3 2 1 13 13 H 1.08997 * 109.47003 * 183.52605 * 12 3 2 14 14 C 1.52996 * 109.46686 * 63.52677 * 12 3 2 15 15 C 1.52998 * 109.46748 * 303.52939 * 12 3 2 16 16 N 1.46495 * 109.47270 * 304.99353 * 15 12 3 17 17 C 1.34777 * 120.00277 * 180.02562 * 16 15 12 18 18 O 1.21612 * 119.99716 * 0.02562 * 17 16 15 19 19 C 1.47417 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.36069 * 126.44619 * 359.68529 * 19 17 16 21 21 C 1.29933 * 108.47526 * 179.86085 * 20 19 17 22 22 O 1.34057 * 109.24549 * 0.40881 * 21 20 19 23 23 C 1.34258 * 108.22343 * 359.74831 * 22 21 20 24 24 C 1.50699 * 126.52265 * 179.97438 * 23 22 21 25 25 F 1.39898 * 109.47130 * 270.03484 * 24 23 22 26 26 F 1.39899 * 109.47297 * 30.03697 * 24 23 22 27 27 F 1.39905 * 109.47008 * 150.03771 * 24 23 22 28 28 H 1.08996 * 109.46609 * 299.99549 * 1 2 3 29 29 H 1.08993 * 109.47111 * 59.99776 * 1 2 3 30 30 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46901 * 240.00387 * 2 1 3 32 32 H 1.08994 * 109.47541 * 120.00541 * 2 1 3 33 33 H 0.96997 * 120.00280 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47599 * 300.00199 * 14 12 3 35 35 H 1.08997 * 109.47525 * 60.00536 * 14 12 3 36 36 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 37 37 H 1.09001 * 109.47327 * 65.00127 * 15 12 3 38 38 H 1.09000 * 109.46821 * 184.99588 * 15 12 3 39 39 H 0.97002 * 120.00005 * 0.02562 * 16 15 12 40 40 H 1.08002 * 125.38305 * 180.11999 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0661 1.1800 5 1 2.3294 1.5312 2.0980 6 6 1.9981 3.4474 1.1973 7 7 1.4074 4.0627 0.1949 8 14 2.6518 4.4328 2.6433 9 1 4.0597 4.8245 2.3792 10 1 1.8245 5.6525 2.8256 11 1 2.5911 3.6048 3.8745 12 6 2.3819 2.0298 -1.2624 13 1 2.7791 3.0241 -1.0588 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1929 -1.9783 16 7 4.5830 0.9792 -1.0823 17 6 5.6457 0.2643 -1.5019 18 8 5.6592 -0.2029 -2.6246 19 6 6.7918 0.0488 -0.6001 20 7 6.9175 0.5136 0.6726 21 6 8.0612 0.1169 1.1447 22 8 8.7029 -0.5954 0.2077 23 6 7.9257 -0.6474 -0.8858 24 6 8.2479 -1.3437 -2.1828 25 9 8.9113 -0.4558 -3.0365 26 9 9.0691 -2.4473 -1.9282 27 9 7.0623 -1.7743 -2.7880 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.3113 5.0278 0.2071 34 1 0.7443 1.1537 -2.3541 35 1 0.3850 2.7442 -1.6405 36 1 1.4121 2.6301 -3.0900 37 1 3.0182 0.2300 -2.2609 38 1 3.7787 1.7185 -2.8725 39 1 4.5724 1.3522 -0.1869 40 1 8.4377 0.3314 2.1340 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154083438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:22 Heat of formation + Delta-G solvation = -148.357470 kcal Electronic energy + Delta-G solvation = -30463.066971 eV Core-core repulsion = 25672.490140 eV Total energy + Delta-G solvation = -4790.576832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -51.37306 -48.92372 -48.81583 -44.83133 -40.72272 -38.63696 -36.29116 -35.39668 -33.71023 -32.84941 -32.41878 -30.08685 -28.31609 -26.84708 -25.82059 -24.84868 -23.47433 -23.23581 -21.73682 -21.10185 -20.18858 -19.84944 -19.50553 -19.03576 -18.52656 -18.01395 -17.23218 -16.98473 -16.53204 -16.42542 -15.84884 -15.75446 -15.66828 -15.42390 -15.30865 -15.25177 -15.07714 -14.96332 -14.66729 -14.37773 -14.05701 -13.89251 -13.66929 -13.27692 -13.09209 -12.98675 -12.81198 -12.72415 -12.60399 -12.19547 -12.14566 -12.06817 -11.71982 -11.32312 -11.26902 -11.24878 -10.79117 -10.42048 -10.02548 -8.58179 -7.78816 -5.22549 -0.64727 0.48362 0.84341 1.51870 1.55684 1.61200 1.71223 1.96617 1.99163 2.46101 2.58186 2.83891 3.01660 3.05085 3.36185 3.42894 3.66260 3.86162 4.14379 4.22810 4.45711 4.52662 4.71646 4.82607 4.86328 4.90902 4.91604 5.04241 5.09982 5.18623 5.33972 5.39430 5.61659 5.76648 5.77475 5.92852 6.03448 6.48478 6.52794 7.01101 7.26904 7.95857 8.45157 9.25936 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.003921 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.559457 B = 7138.766481 C = 8139.632185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.254 4.254 5 H 0.061 0.939 6 C -0.034 4.034 7 N -0.915 5.915 8 Si 0.950 3.050 9 H -0.287 1.287 10 H -0.304 1.304 11 H -0.274 1.274 12 C 0.182 3.818 13 H 0.073 0.927 14 C -0.131 4.131 15 C 0.110 3.890 16 N -0.677 5.677 17 C 0.572 3.428 18 O -0.549 6.549 19 C 0.011 3.989 20 N -0.496 5.496 21 C 0.253 3.747 22 O -0.166 6.166 23 C -0.096 4.096 24 C 0.568 3.432 25 F -0.163 7.163 26 F -0.162 7.162 27 F -0.137 7.137 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.247 0.753 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.419 -9.421 -0.275 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.384 4.384 5 H 0.079 0.921 6 C -0.231 4.231 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.214 1.214 10 H -0.231 1.231 11 H -0.200 1.200 12 C 0.075 3.925 13 H 0.091 0.909 14 C -0.191 4.191 15 C -0.015 4.015 16 N -0.326 5.326 17 C 0.356 3.644 18 O -0.428 6.428 19 C -0.111 4.111 20 N -0.224 5.224 21 C 0.027 3.973 22 O -0.053 6.053 23 C -0.155 4.155 24 C 0.513 3.487 25 F -0.144 7.144 26 F -0.143 7.143 27 F -0.118 7.118 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.254 0.746 40 H 0.341 0.659 Dipole moment (debyes) X Y Z Total from point charges 13.932 -9.237 -0.771 16.734 hybrid contribution 0.373 0.661 0.725 1.049 sum 14.305 -8.576 -0.046 16.679 Atomic orbital electron populations 1.22254 0.98906 0.99831 1.00562 1.20865 0.92525 0.86353 0.98686 1.44103 1.74124 1.10368 1.02655 1.19271 1.41746 0.89455 0.87927 0.92135 1.25540 0.99611 0.98627 0.99296 1.70142 1.44132 1.08030 1.33649 0.85532 0.77680 0.78115 0.80624 1.21374 1.23100 1.19956 1.20382 0.91652 0.95474 0.85024 0.90886 1.21948 0.99206 0.99850 0.98079 1.22056 0.86390 1.00562 0.92453 1.45786 1.16506 1.51178 1.19165 1.17079 0.81925 0.79722 0.85663 1.90879 1.80927 1.51265 1.19766 1.21715 0.95785 0.99971 0.93599 1.71063 1.20740 1.23710 1.06848 1.29881 0.85263 0.86147 0.96022 1.84412 1.43230 1.58092 1.19533 1.22947 0.93584 1.08119 0.90843 1.16414 0.75271 0.76368 0.80684 1.93266 1.80826 1.68503 1.71832 1.93259 1.72832 1.54216 1.94011 1.93431 1.45533 1.89431 1.83411 0.95195 0.93815 0.92351 0.93252 0.94559 0.94402 0.93839 0.93113 0.93533 0.92006 0.91665 0.74624 0.65853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.80 10.02 71.98 0.72 -5.08 16 2 C 0.14 5.50 5.73 86.38 0.49 6.00 16 3 N -0.59 -26.14 1.84 -678.03 -1.25 -27.38 16 4 C -0.25 -12.54 9.50 84.03 0.80 -11.74 16 5 H 0.06 3.02 7.90 -2.91 -0.02 3.00 16 6 C -0.03 -1.72 4.84 84.86 0.41 -1.31 16 7 N -0.91 -48.84 10.24 21.65 0.22 -48.62 16 8 Si 0.95 42.10 29.59 68.60 2.03 44.13 16 9 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 C 0.18 7.71 1.93 44.99 0.09 7.80 16 13 H 0.07 3.60 5.93 -2.39 -0.01 3.59 16 14 C -0.13 -5.30 8.25 71.98 0.59 -4.71 16 15 C 0.11 4.13 4.85 86.38 0.42 4.55 16 16 N -0.68 -25.07 5.38 -466.39 -2.51 -27.59 16 17 C 0.57 20.43 7.76 86.66 0.67 21.10 16 18 O -0.55 -21.27 13.14 -4.07 -0.05 -21.32 16 19 C 0.01 0.34 6.96 40.41 0.28 0.62 16 20 N -0.50 -12.85 11.06 -305.14 -3.37 -16.22 16 21 C 0.25 3.79 13.19 130.52 1.72 5.51 16 22 O -0.17 -3.15 10.72 0.30 0.00 -3.15 16 23 C -0.10 -2.49 6.75 25.19 0.17 -2.32 16 24 C 0.57 14.87 3.34 71.24 0.24 15.11 16 25 F -0.16 -4.31 17.30 44.97 0.78 -3.53 16 26 F -0.16 -3.72 17.30 44.97 0.78 -2.94 16 27 F -0.14 -4.25 13.48 44.97 0.61 -3.64 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.66 6.03 -2.39 -0.01 1.65 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.80 6.35 -2.38 -0.02 1.79 16 32 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16 33 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 34 H 0.04 1.60 6.50 -2.39 -0.02 1.59 16 35 H 0.05 2.37 7.22 -2.39 -0.02 2.35 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.28 6.76 -2.39 -0.02 2.27 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.42 16.32 7.81 -92.71 -0.72 15.60 16 40 H 0.33 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -62.35 346.03 4.23 -58.12 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.39 Total: 16.59 kcal Atomic # 6 Polarization: 28.93 SS G_CDS: 6.61 Total: 35.54 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -6.91 Total: -119.81 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 9 Polarization: -12.27 SS G_CDS: 2.16 Total: -10.11 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -62.35 4.23 -58.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154083438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.234 kcal (2) G-P(sol) polarization free energy of solvation -62.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds