Wall clock time and date at job start Tue Mar 31 2020 18:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46898 * 2 1 4 4 C 1.36941 * 119.99669 * 275.91567 * 3 2 1 5 5 H 1.07992 * 119.99853 * 34.06921 * 4 3 2 6 6 C 1.38815 * 119.99520 * 214.07101 * 4 3 2 7 7 N 1.31619 * 120.00153 * 17.05439 * 6 4 3 8 8 Si 1.86807 * 119.99615 * 197.05827 * 6 4 3 9 9 H 1.48504 * 109.47019 * 59.99813 * 8 6 4 10 10 H 1.48501 * 109.46987 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46832 * 299.99855 * 8 6 4 12 12 C 1.46497 * 120.00014 * 95.91604 * 3 2 1 13 13 H 1.08998 * 109.47029 * 177.14610 * 12 3 2 14 14 C 1.53004 * 109.46848 * 57.14673 * 12 3 2 15 15 C 1.52998 * 109.47029 * 297.14498 * 12 3 2 16 16 N 1.46491 * 109.47124 * 304.99788 * 15 12 3 17 17 C 1.34781 * 120.00017 * 180.02562 * 16 15 12 18 18 O 1.21610 * 120.00012 * 359.97438 * 17 16 15 19 19 C 1.47417 * 120.00290 * 180.02562 * 17 16 15 20 20 C 1.36088 * 126.45159 * 179.71113 * 19 17 16 21 21 O 1.34255 * 106.94868 * 179.89612 * 20 19 17 22 22 C 1.34042 * 108.22958 * 0.36546 * 21 20 19 23 23 C 1.50705 * 125.38011 * 179.79960 * 22 21 20 24 24 F 1.39896 * 109.47369 * 269.96451 * 23 22 21 25 25 F 1.39902 * 109.47014 * 29.96546 * 23 22 21 26 26 F 1.39901 * 109.46848 * 149.95935 * 23 22 21 27 27 N 1.29931 * 109.24471 * 359.77203 * 22 21 20 28 28 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47432 * 299.99974 * 1 2 3 30 30 H 1.08993 * 109.47353 * 60.00287 * 1 2 3 31 31 H 1.09002 * 109.46966 * 120.00168 * 2 1 3 32 32 H 1.08997 * 109.46971 * 239.99767 * 2 1 3 33 33 H 0.97003 * 119.99734 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47254 * 299.99799 * 14 12 3 35 35 H 1.08996 * 109.47627 * 60.00075 * 14 12 3 36 36 H 1.09005 * 109.46750 * 180.02562 * 14 12 3 37 37 H 1.09000 * 109.47261 * 65.00025 * 15 12 3 38 38 H 1.09001 * 109.46684 * 184.99991 * 15 12 3 39 39 H 0.96997 * 120.00271 * 0.02562 * 16 15 12 40 40 H 1.08001 * 126.52673 * 0.03672 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1312 2.0675 -1.1797 5 1 1.4232 1.8925 -1.9761 6 6 3.1559 2.9880 -1.3517 7 7 4.1988 2.9695 -0.5489 8 14 3.0546 4.2531 -2.7225 9 1 1.8453 5.0937 -2.5318 10 1 4.2646 5.1134 -2.6925 11 1 2.9729 3.5581 -4.0322 12 6 2.3857 2.0283 1.2619 13 1 2.7712 3.0274 1.0592 14 6 3.4622 1.1993 1.9655 15 6 1.1519 2.1304 2.1609 16 7 0.0791 2.8210 1.4410 17 6 -1.1104 3.0273 2.0402 18 8 -1.2933 2.6396 3.1783 19 6 -2.1902 3.7218 1.3157 20 6 -3.4369 3.9935 1.7890 21 8 -4.0951 4.6365 0.8114 22 6 -3.2743 4.7502 -0.2423 23 6 -3.6235 5.4057 -1.5536 24 9 -4.1644 4.4519 -2.4223 25 9 -4.5612 6.4203 -1.3327 26 9 -2.4690 5.9537 -2.1229 27 7 -2.1299 4.2066 0.0457 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 4.9147 3.6131 -0.6690 34 1 3.0767 0.2002 2.1683 35 1 4.3412 1.1266 1.3252 36 1 3.7353 1.6805 2.9047 37 1 0.8190 1.1296 2.4361 38 1 1.4040 2.6901 3.0616 39 1 0.2248 3.1299 0.5332 40 1 -3.8225 3.7420 2.7660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154174277.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:27 Heat of formation + Delta-G solvation = -152.225265 kcal Electronic energy + Delta-G solvation = -30309.617136 eV Core-core repulsion = 25518.872584 eV Total energy + Delta-G solvation = -4790.744552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -51.54814 -49.05937 -49.05319 -44.95721 -40.69544 -38.60848 -36.46486 -35.28013 -33.74110 -32.89602 -32.47660 -29.95485 -28.24521 -27.48055 -25.79362 -24.92439 -23.49904 -23.22643 -21.84991 -21.04425 -20.18662 -20.03133 -19.70482 -18.84304 -18.46453 -18.11205 -17.58492 -17.12133 -16.58698 -16.43932 -15.86306 -15.83309 -15.69238 -15.51040 -15.42230 -15.16385 -15.14988 -15.13291 -14.66096 -14.32061 -14.16796 -14.00419 -13.83230 -13.50990 -13.22568 -12.90114 -12.79397 -12.75601 -12.54077 -12.41725 -12.37199 -12.09109 -11.86910 -11.37565 -11.34838 -11.17041 -10.73619 -10.42542 -9.98282 -8.51344 -7.82583 -5.32818 -0.36633 0.28545 0.34719 1.40636 1.48553 1.52271 1.57153 1.95353 2.06538 2.16362 2.54230 2.85086 2.88666 3.26514 3.31904 3.47052 3.67256 3.88823 4.21187 4.26957 4.39689 4.44957 4.57247 4.66974 4.80817 4.87231 4.92255 4.97470 5.06201 5.22581 5.31999 5.40453 5.57278 5.70743 5.74585 5.80554 5.87646 6.49787 6.56917 7.06135 7.25356 7.93421 8.44366 9.20472 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.004717 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.626409 B = 5934.697427 C = 7515.219097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.258 4.258 5 H 0.054 0.946 6 C -0.027 4.027 7 N -0.912 5.912 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.297 1.297 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.070 0.930 14 C -0.133 4.133 15 C 0.111 3.889 16 N -0.684 5.684 17 C 0.594 3.406 18 O -0.566 6.566 19 C -0.097 4.097 20 C 0.091 3.909 21 O -0.159 6.159 22 C 0.088 3.912 23 C 0.596 3.404 24 F -0.151 7.151 25 F -0.147 7.147 26 F -0.149 7.149 27 N -0.412 5.412 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.413 0.587 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.893 3.215 3.765 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.389 4.389 5 H 0.072 0.928 6 C -0.224 4.224 7 N -0.556 5.556 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.223 1.223 11 H -0.208 1.208 12 C 0.069 3.931 13 H 0.088 0.912 14 C -0.193 4.193 15 C -0.014 4.014 16 N -0.332 5.332 17 C 0.379 3.621 18 O -0.447 6.447 19 C -0.219 4.219 20 C 0.016 3.984 21 O -0.042 6.042 22 C -0.123 4.123 23 C 0.540 3.460 24 F -0.132 7.132 25 F -0.128 7.128 26 F -0.130 7.130 27 N -0.143 5.143 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.250 0.750 40 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -16.344 3.034 4.058 17.111 hybrid contribution 0.020 0.912 -1.089 1.421 sum -16.323 3.945 2.968 17.054 Atomic orbital electron populations 1.22229 0.98399 1.00202 1.00422 1.20850 0.92752 0.86188 0.98895 1.43972 1.76062 1.09201 1.02001 1.19107 1.06887 1.18638 0.94242 0.92835 1.25615 0.94529 1.02734 0.99566 1.70104 1.07633 1.36791 1.41059 0.85738 0.76553 0.80047 0.80460 1.20571 1.22321 1.20804 1.20424 0.90180 0.98088 0.84405 0.91191 1.21849 0.99305 0.98980 0.99119 1.22089 0.88151 0.96144 0.94995 1.45884 1.11971 1.56308 1.19065 1.16813 0.81570 0.78812 0.84886 1.90779 1.82084 1.53927 1.17908 1.22004 0.98157 1.10052 0.91690 1.26451 0.89266 0.89025 0.93659 1.84432 1.41087 1.58159 1.20533 1.25548 0.86931 1.07331 0.92489 1.15793 0.75119 0.76075 0.79049 1.93323 1.85744 1.63941 1.70230 1.93312 1.65040 1.60014 1.94479 1.93340 1.49354 1.85439 1.84872 1.70700 1.21229 1.08179 1.14215 0.92309 0.93710 0.94908 0.93054 0.95153 0.94185 0.93354 0.93625 0.92725 0.91987 0.91815 0.74986 0.69593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.95 71.98 0.72 -4.67 16 2 C 0.14 5.48 5.75 86.38 0.50 5.97 16 3 N -0.59 -26.64 1.88 -678.04 -1.28 -27.91 16 4 C -0.26 -13.16 9.07 84.03 0.76 -12.39 16 5 H 0.05 2.79 7.89 -2.91 -0.02 2.77 16 6 C -0.03 -1.40 4.86 84.86 0.41 -0.99 16 7 N -0.91 -49.64 10.90 21.65 0.24 -49.41 16 8 Si 0.94 43.55 29.59 68.60 2.03 45.58 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.18 7.48 1.95 44.99 0.09 7.56 16 13 H 0.07 3.48 5.94 -2.39 -0.01 3.46 16 14 C -0.13 -5.22 9.05 71.98 0.65 -4.57 16 15 C 0.11 4.11 4.36 86.38 0.38 4.49 16 16 N -0.68 -25.31 4.28 -466.39 -1.99 -27.30 16 17 C 0.59 19.98 7.77 86.66 0.67 20.65 16 18 O -0.57 -20.12 16.89 -4.06 -0.07 -20.19 16 19 C -0.10 -2.76 6.99 40.40 0.28 -2.47 16 20 C 0.09 1.70 11.95 67.32 0.80 2.50 16 21 O -0.16 -3.14 10.70 0.47 0.01 -3.13 16 22 C 0.09 2.16 7.53 88.39 0.67 2.83 16 23 C 0.60 13.15 3.57 71.24 0.25 13.40 16 24 F -0.15 -3.30 17.30 44.97 0.78 -2.52 16 25 F -0.15 -2.77 17.28 44.97 0.78 -2.00 16 26 F -0.15 -3.85 17.23 44.97 0.77 -3.07 16 27 N -0.41 -12.63 10.96 -293.04 -3.21 -15.85 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.59 5.32 -2.39 -0.01 1.58 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.88 6.29 -2.39 -0.02 1.87 16 32 H 0.03 1.25 8.09 -2.39 -0.02 1.23 16 33 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 34 H 0.05 1.70 6.56 -2.39 -0.02 1.69 16 35 H 0.04 2.07 7.69 -2.39 -0.02 2.05 16 36 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.06 2.24 6.98 -2.39 -0.02 2.23 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.41 16.95 7.46 -92.71 -0.69 16.26 16 40 H 0.29 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -60.21 352.28 4.65 -55.56 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.42 Total: 17.93 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 6.18 Total: 32.32 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -6.25 Total: -120.47 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.33 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 2.33 Total: -7.59 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -60.21 4.65 -55.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154174277.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.666 kcal (2) G-P(sol) polarization free energy of solvation -60.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds