Wall clock time and date at job start Tue Mar 31 2020 18:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46711 * 2 1 4 4 C 1.36939 * 120.00183 * 275.73315 * 3 2 1 5 5 H 1.08003 * 119.99806 * 33.27560 * 4 3 2 6 6 C 1.38809 * 120.00453 * 213.27607 * 4 3 2 7 7 N 1.31621 * 119.99963 * 17.25679 * 6 4 3 8 8 Si 1.86797 * 120.00131 * 197.26265 * 6 4 3 9 9 H 1.48504 * 109.47131 * 59.99889 * 8 6 4 10 10 H 1.48505 * 109.47217 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47268 * 299.99840 * 8 6 4 12 12 C 1.46502 * 120.00215 * 95.73591 * 3 2 1 13 13 H 1.09000 * 109.47002 * 180.08166 * 12 3 2 14 14 C 1.53001 * 109.46925 * 60.08443 * 12 3 2 15 15 C 1.53003 * 109.46821 * 300.08496 * 12 3 2 16 16 N 1.46491 * 109.47023 * 304.99619 * 15 12 3 17 17 C 1.34779 * 120.00212 * 179.97438 * 16 15 12 18 18 O 1.21615 * 119.99495 * 0.02562 * 17 16 15 19 19 C 1.47401 * 120.00361 * 179.97438 * 17 16 15 20 20 C 1.37356 * 128.56493 * 0.17337 * 19 17 16 21 21 O 1.33489 * 106.34090 * 180.23342 * 20 19 17 22 22 N 1.20662 * 113.15716 * 359.73243 * 21 20 19 23 23 C 1.30011 * 112.30117 * 0.02562 * 22 21 20 24 24 C 1.50697 * 127.33525 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.47189 * 5.02281 * 24 23 22 26 26 F 1.39901 * 109.47135 * 125.01951 * 24 23 22 27 27 F 1.39896 * 109.47073 * 245.02012 * 24 23 22 28 28 H 1.08995 * 109.47197 * 60.00337 * 1 2 3 29 29 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46900 * 299.99635 * 1 2 3 31 31 H 1.09002 * 109.47299 * 240.00136 * 2 1 3 32 32 H 1.09000 * 109.47593 * 119.99885 * 2 1 3 33 33 H 0.96994 * 120.00242 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46852 * 299.99982 * 14 12 3 35 35 H 1.08998 * 109.47584 * 59.99997 * 14 12 3 36 36 H 1.08998 * 109.46952 * 180.02562 * 14 12 3 37 37 H 1.09003 * 109.46589 * 185.00081 * 15 12 3 38 38 H 1.09003 * 109.47146 * 64.99837 * 15 12 3 39 39 H 0.97003 * 120.00715 * 0.02562 * 16 15 12 40 40 H 1.08001 * 126.82802 * 359.96991 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1347 2.0663 -1.1800 5 1 1.4367 1.8812 -1.9831 6 6 3.1499 2.9987 -1.3440 7 7 4.1869 2.9920 -0.5334 8 14 3.0443 4.2631 -2.7149 9 1 1.8240 5.0896 -2.5331 10 1 4.2441 5.1374 -2.6756 11 1 2.9805 3.5680 -4.0256 12 6 2.3819 2.0297 1.2624 13 1 2.7189 3.0472 1.0643 14 6 3.5077 1.2414 1.9347 15 6 1.1629 2.0668 2.1863 16 7 0.0466 2.7173 1.4959 17 6 -1.1390 2.8629 2.1201 18 8 -1.2818 2.4547 3.2568 19 6 -2.2621 3.5180 1.4257 20 6 -2.2971 4.0373 0.1546 21 8 -3.5273 4.5258 -0.0178 22 7 -4.2365 4.3769 0.9469 23 6 -3.6230 3.7742 1.9219 24 6 -4.1847 3.4189 3.2744 25 9 -5.5466 3.7367 3.3119 26 9 -4.0192 2.0486 3.5028 27 9 -3.5097 4.1415 4.2641 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.8964 3.6433 -0.6482 34 1 3.1707 0.2238 2.1328 35 1 4.3761 1.2149 1.2766 36 1 3.7780 1.7236 2.8742 37 1 1.4080 2.6269 3.0887 38 1 0.8801 1.0492 2.4558 39 1 0.1604 3.0427 0.5892 40 1 -1.4886 4.0516 -0.5614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154336553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:31 Heat of formation + Delta-G solvation = -98.501952 kcal Electronic energy + Delta-G solvation = -30642.304963 eV Core-core repulsion = 25853.890029 eV Total energy + Delta-G solvation = -4788.414934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.23960 -47.79867 -47.69060 -45.49597 -39.42377 -37.04114 -34.51039 -33.97587 -32.57476 -31.97489 -31.05124 -28.30694 -27.54025 -26.17729 -24.17971 -23.99649 -22.18056 -21.82378 -20.48159 -19.54533 -19.07025 -18.79967 -18.37712 -17.97187 -17.81699 -16.96655 -16.08430 -15.77192 -15.07103 -14.92167 -14.63573 -14.56216 -14.29708 -14.17759 -14.10740 -13.85504 -13.83049 -13.73133 -13.25745 -12.80345 -12.60514 -12.45258 -12.29283 -12.18855 -11.94503 -11.62443 -11.17007 -11.06799 -11.01869 -10.90665 -10.80726 -10.42847 -10.20323 -10.11487 -9.93609 -9.75070 -9.55452 -8.68074 -8.60012 -6.79164 -6.00134 -3.49703 0.77888 0.96518 2.08529 2.54719 3.17917 3.20472 3.22756 3.28343 3.29597 3.31727 3.55929 4.19632 4.25912 4.30069 4.47325 4.59487 5.03895 5.14636 5.20812 5.27947 5.76896 5.95099 6.05437 6.14559 6.27617 6.36828 6.44582 6.50228 6.58086 6.74027 6.80789 6.82828 7.05925 7.36019 7.46490 7.51365 7.64915 7.82868 8.30482 8.38346 9.03902 9.65195 10.22977 11.06424 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.004009 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.740015 B = 6981.750128 C = 7884.362487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.139 3.861 3 N -0.583 5.583 4 C -0.270 4.270 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.686 5.686 17 C 0.577 3.423 18 O -0.532 6.532 19 C -0.202 4.202 20 C 0.008 3.992 21 O 0.129 5.871 22 N -0.300 5.300 23 C -0.042 4.042 24 C 0.564 3.436 25 F -0.170 7.170 26 F -0.152 7.152 27 F -0.157 7.157 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.256 0.744 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.411 0.589 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 1.619 2.863 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.399 4.399 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.069 3.931 13 H 0.119 0.881 14 C -0.204 4.204 15 C -0.023 4.023 16 N -0.336 5.336 17 C 0.361 3.639 18 O -0.410 6.410 19 C -0.210 4.210 20 C -0.073 4.073 21 O 0.057 5.943 22 N 0.003 4.997 23 C -0.205 4.205 24 C 0.508 3.492 25 F -0.151 7.151 26 F -0.133 7.133 27 F -0.138 7.138 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -12.166 1.885 3.576 12.820 hybrid contribution 0.751 0.409 -0.814 1.181 sum -11.414 2.294 2.762 11.966 Atomic orbital electron populations 1.22451 1.00051 0.99212 1.01314 1.20769 0.91608 0.87433 0.98876 1.43908 1.76048 1.08288 1.02238 1.19044 1.08930 1.18459 0.93474 0.91779 1.25181 0.94467 1.01341 0.97716 1.69986 1.07738 1.35872 1.39408 0.86485 0.77100 0.81495 0.82278 1.20938 1.21657 1.20812 1.20514 0.88766 0.99670 0.84188 0.88119 1.22018 1.01041 0.97999 0.99308 1.22305 0.87515 0.96506 0.95969 1.45785 1.10314 1.58606 1.18928 1.16776 0.81623 0.79749 0.85731 1.90839 1.82775 1.50022 1.17384 1.22380 0.94903 1.08328 0.95368 1.26762 0.88690 0.94339 0.97518 1.84609 1.19233 1.58494 1.31939 1.73721 1.17155 1.14060 0.94803 1.24615 0.93330 1.05637 0.96962 1.16453 0.75018 0.75686 0.82030 1.93236 1.32427 1.92701 1.96725 1.93296 1.95078 1.30053 1.94855 1.93273 1.79989 1.77592 1.62929 0.93488 0.94729 0.93106 0.94027 0.94434 0.93351 0.95056 0.90207 0.94742 0.92354 0.92264 0.75263 0.73987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.87 37.16 0.37 -2.44 16 2 C 0.14 2.58 5.67 -4.04 -0.02 2.56 16 3 N -0.58 -11.86 1.85 -165.65 -0.31 -12.16 16 4 C -0.27 -6.04 9.26 -15.06 -0.14 -6.18 16 5 H 0.06 1.43 7.89 -52.48 -0.41 1.01 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -21.98 10.60 55.49 0.59 -21.39 16 8 Si 0.90 18.57 29.59 -169.99 -5.03 13.54 16 9 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.18 3.42 1.92 -67.93 -0.13 3.29 16 13 H 0.10 2.23 6.04 -51.93 -0.31 1.92 16 14 C -0.14 -2.74 9.05 37.16 0.34 -2.40 16 15 C 0.10 1.76 4.34 -4.05 -0.02 1.75 16 16 N -0.69 -10.90 3.98 -61.39 -0.24 -11.15 16 17 C 0.58 9.39 7.58 -12.53 -0.09 9.30 16 18 O -0.53 -10.21 15.53 5.26 0.08 -10.13 16 19 C -0.20 -2.77 6.47 -102.89 -0.67 -3.44 16 20 C 0.01 0.08 11.85 30.41 0.36 0.44 16 21 O 0.13 1.42 11.06 18.66 0.21 1.62 16 22 N -0.30 -3.96 11.85 34.78 0.41 -3.55 16 23 C -0.04 -0.60 6.83 -79.77 -0.54 -1.15 16 24 C 0.56 8.27 3.01 36.00 0.11 8.38 16 25 F -0.17 -2.32 17.19 2.25 0.04 -2.28 16 26 F -0.15 -2.38 16.41 2.25 0.04 -2.34 16 27 F -0.16 -2.40 17.21 2.25 0.04 -2.36 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.86 4.99 -51.93 -0.26 0.60 16 31 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.04 0.68 6.45 -51.93 -0.33 0.34 16 33 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 34 H 0.03 0.55 6.67 -51.92 -0.35 0.20 16 35 H 0.08 1.74 7.39 -51.93 -0.38 1.36 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.06 7.05 -51.93 -0.37 0.69 16 39 H 0.41 6.28 7.08 -40.82 -0.29 5.99 16 40 H 0.24 1.67 7.68 -52.49 -0.40 1.27 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -26.50 347.48 -3.82 -30.32 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.36 Total: 4.29 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.53 Total: 10.35 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.45 Total: -48.25 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.29 Total: -8.50 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.11 Total: -6.98 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.50 -3.82 -30.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154336553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.181 kcal (2) G-P(sol) polarization free energy of solvation -26.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds