Wall clock time and date at job start Tue Mar 31 2020 18:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46711 * 2 1 4 4 C 1.36939 * 120.00183 * 275.73315 * 3 2 1 5 5 H 1.08003 * 119.99806 * 33.27560 * 4 3 2 6 6 C 1.38809 * 120.00453 * 213.27607 * 4 3 2 7 7 N 1.31621 * 119.99963 * 17.25679 * 6 4 3 8 8 Si 1.86797 * 120.00131 * 197.26265 * 6 4 3 9 9 H 1.48504 * 109.47131 * 59.99889 * 8 6 4 10 10 H 1.48505 * 109.47217 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47268 * 299.99840 * 8 6 4 12 12 C 1.46502 * 120.00215 * 95.73591 * 3 2 1 13 13 H 1.09000 * 109.47002 * 180.08166 * 12 3 2 14 14 C 1.53001 * 109.46925 * 60.08443 * 12 3 2 15 15 C 1.53003 * 109.46821 * 300.08496 * 12 3 2 16 16 N 1.46491 * 109.47023 * 304.99619 * 15 12 3 17 17 C 1.34779 * 120.00212 * 179.97438 * 16 15 12 18 18 O 1.21615 * 119.99495 * 0.02562 * 17 16 15 19 19 C 1.47401 * 120.00361 * 179.97438 * 17 16 15 20 20 C 1.37356 * 128.56493 * 0.17337 * 19 17 16 21 21 O 1.33489 * 106.34090 * 180.23342 * 20 19 17 22 22 N 1.20662 * 113.15716 * 359.73243 * 21 20 19 23 23 C 1.30011 * 112.30117 * 0.02562 * 22 21 20 24 24 C 1.50697 * 127.33525 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.47189 * 5.02281 * 24 23 22 26 26 F 1.39901 * 109.47135 * 125.01951 * 24 23 22 27 27 F 1.39896 * 109.47073 * 245.02012 * 24 23 22 28 28 H 1.08995 * 109.47197 * 60.00337 * 1 2 3 29 29 H 1.08998 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46900 * 299.99635 * 1 2 3 31 31 H 1.09002 * 109.47299 * 240.00136 * 2 1 3 32 32 H 1.09000 * 109.47593 * 119.99885 * 2 1 3 33 33 H 0.96994 * 120.00242 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.46852 * 299.99982 * 14 12 3 35 35 H 1.08998 * 109.47584 * 59.99997 * 14 12 3 36 36 H 1.08998 * 109.46952 * 180.02562 * 14 12 3 37 37 H 1.09003 * 109.46589 * 185.00081 * 15 12 3 38 38 H 1.09003 * 109.47146 * 64.99837 * 15 12 3 39 39 H 0.97003 * 120.00715 * 0.02562 * 16 15 12 40 40 H 1.08001 * 126.82802 * 359.96991 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1347 2.0663 -1.1800 5 1 1.4367 1.8812 -1.9831 6 6 3.1499 2.9987 -1.3440 7 7 4.1869 2.9920 -0.5334 8 14 3.0443 4.2631 -2.7149 9 1 1.8240 5.0896 -2.5331 10 1 4.2441 5.1374 -2.6756 11 1 2.9805 3.5680 -4.0256 12 6 2.3819 2.0297 1.2624 13 1 2.7189 3.0472 1.0643 14 6 3.5077 1.2414 1.9347 15 6 1.1629 2.0668 2.1863 16 7 0.0466 2.7173 1.4959 17 6 -1.1390 2.8629 2.1201 18 8 -1.2818 2.4547 3.2568 19 6 -2.2621 3.5180 1.4257 20 6 -2.2971 4.0373 0.1546 21 8 -3.5273 4.5258 -0.0178 22 7 -4.2365 4.3769 0.9469 23 6 -3.6230 3.7742 1.9219 24 6 -4.1847 3.4189 3.2744 25 9 -5.5466 3.7367 3.3119 26 9 -4.0192 2.0486 3.5028 27 9 -3.5097 4.1415 4.2641 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.8964 3.6433 -0.6482 34 1 3.1707 0.2238 2.1328 35 1 4.3761 1.2149 1.2766 36 1 3.7780 1.7236 2.8742 37 1 1.4080 2.6269 3.0887 38 1 0.8801 1.0492 2.4558 39 1 0.1604 3.0427 0.5892 40 1 -1.4886 4.0516 -0.5614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154336553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:30 Heat of formation + Delta-G solvation = -112.781628 kcal Electronic energy + Delta-G solvation = -30642.924176 eV Core-core repulsion = 25853.890029 eV Total energy + Delta-G solvation = -4789.034147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.38251 -48.92564 -48.86677 -46.50010 -40.74119 -38.56230 -35.54369 -35.37374 -33.80488 -33.50786 -32.47394 -29.88441 -28.67769 -27.47032 -25.73632 -25.29993 -23.32859 -23.19358 -21.68713 -21.02567 -20.20132 -19.91501 -19.50654 -19.07485 -19.00277 -18.49585 -17.23282 -17.11451 -16.53989 -16.41000 -15.81688 -15.75616 -15.62386 -15.52673 -15.27555 -15.11630 -15.02490 -14.98353 -14.57545 -14.26591 -13.93944 -13.77246 -13.68117 -13.47636 -13.21014 -13.13832 -12.71937 -12.66167 -12.43405 -12.35972 -12.04902 -12.02242 -11.81201 -11.30956 -11.28021 -11.12527 -11.11779 -10.35754 -9.98610 -8.47073 -7.75124 -5.25842 -0.18915 -0.05284 1.02126 1.58688 1.59591 1.63090 1.67443 2.00943 2.08462 2.16485 2.46623 2.62082 3.05496 3.20410 3.40042 3.43042 3.56817 3.70346 3.96980 4.27529 4.39254 4.51348 4.60526 4.73752 4.85211 4.93222 4.98206 5.01192 5.12229 5.28507 5.38225 5.43378 5.63170 5.75708 5.82158 5.92434 6.50550 6.57035 6.62500 7.12447 7.31206 7.98706 8.52513 9.28944 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.004009 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.740015 B = 6981.750128 C = 7884.362487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.262 4.262 5 H 0.070 0.930 6 C -0.030 4.030 7 N -0.916 5.916 8 Si 0.950 3.050 9 H -0.260 1.260 10 H -0.310 1.310 11 H -0.287 1.287 12 C 0.183 3.817 13 H 0.075 0.925 14 C -0.137 4.137 15 C 0.116 3.884 16 N -0.681 5.681 17 C 0.583 3.417 18 O -0.566 6.566 19 C -0.230 4.230 20 C 0.050 3.950 21 O 0.148 5.852 22 N -0.306 5.306 23 C -0.057 4.057 24 C 0.562 3.438 25 F -0.166 7.166 26 F -0.161 7.161 27 F -0.164 7.164 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.247 0.753 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 1.984 1.647 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.087 0.913 6 C -0.228 4.228 7 N -0.560 5.560 8 Si 0.779 3.221 9 H -0.185 1.185 10 H -0.238 1.238 11 H -0.214 1.214 12 C 0.076 3.924 13 H 0.093 0.907 14 C -0.196 4.196 15 C -0.010 4.010 16 N -0.331 5.331 17 C 0.368 3.632 18 O -0.447 6.447 19 C -0.239 4.239 20 C -0.031 4.031 21 O 0.074 5.926 22 N -0.001 5.001 23 C -0.220 4.220 24 C 0.506 3.494 25 F -0.147 7.147 26 F -0.142 7.142 27 F -0.145 7.145 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -13.509 2.245 2.359 13.896 hybrid contribution 1.160 0.251 -0.480 1.280 sum -12.349 2.496 1.878 12.738 Atomic orbital electron populations 1.22267 0.97948 1.00235 1.01140 1.20828 0.93087 0.86376 0.98450 1.44041 1.76124 1.09027 1.02079 1.19273 1.08209 1.17755 0.93965 0.91284 1.25739 0.94413 1.03112 0.99500 1.70140 1.08389 1.36371 1.41138 0.85642 0.76989 0.79628 0.79837 1.18524 1.23758 1.21377 1.20345 0.89589 0.98172 0.84302 0.90659 1.21898 0.99732 0.98793 0.99194 1.21995 0.87038 0.96515 0.95407 1.45648 1.09992 1.58470 1.18965 1.16956 0.81902 0.79054 0.85283 1.90821 1.83362 1.51554 1.18960 1.22102 0.94135 1.10739 0.96916 1.27354 0.88538 0.90848 0.96351 1.84622 1.19354 1.57641 1.30964 1.73733 1.17548 1.13942 0.94889 1.24556 0.93811 1.06660 0.96946 1.16531 0.75179 0.75245 0.82397 1.93238 1.32095 1.92615 1.96742 1.93271 1.95156 1.30778 1.94973 1.93252 1.80188 1.77686 1.63382 0.93222 0.93169 0.93554 0.95167 0.94193 0.94400 0.94059 0.93357 0.93301 0.92294 0.92621 0.74729 0.70307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 9.87 71.98 0.71 -4.03 16 2 C 0.14 4.91 5.67 86.38 0.49 5.40 16 3 N -0.59 -23.31 1.85 -678.01 -1.25 -24.56 16 4 C -0.26 -11.33 9.26 84.03 0.78 -10.55 16 5 H 0.07 2.90 7.89 -2.91 -0.02 2.88 16 6 C -0.03 -1.37 4.85 84.86 0.41 -0.96 16 7 N -0.92 -45.72 10.60 21.65 0.23 -45.49 16 8 Si 0.95 37.21 29.59 68.60 2.03 39.24 16 9 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 10 H -0.31 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.29 -11.41 7.11 99.48 0.71 -10.71 16 12 C 0.18 7.00 1.92 44.99 0.09 7.08 16 13 H 0.08 3.32 6.04 -2.39 -0.01 3.31 16 14 C -0.14 -5.16 9.05 71.98 0.65 -4.51 16 15 C 0.12 3.88 4.34 86.38 0.37 4.25 16 16 N -0.68 -20.41 3.98 -466.39 -1.86 -22.27 16 17 C 0.58 18.07 7.58 86.66 0.66 18.72 16 18 O -0.57 -21.40 15.53 -4.08 -0.06 -21.46 16 19 C -0.23 -5.82 6.47 -18.74 -0.12 -5.94 16 20 C 0.05 0.83 11.85 67.61 0.80 1.63 16 21 O 0.15 2.73 11.06 77.01 0.85 3.58 16 22 N -0.31 -7.34 11.85 -44.78 -0.53 -7.87 16 23 C -0.06 -1.54 6.83 45.16 0.31 -1.23 16 24 C 0.56 16.17 3.01 71.23 0.21 16.38 16 25 F -0.17 -4.42 17.19 44.97 0.77 -3.65 16 26 F -0.16 -5.00 16.41 44.97 0.74 -4.26 16 27 F -0.16 -4.99 17.21 44.97 0.77 -4.22 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.45 4.99 -2.39 -0.01 1.44 16 31 H 0.03 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.04 1.39 6.45 -2.39 -0.02 1.37 16 33 H 0.25 12.39 8.31 -92.71 -0.77 11.62 16 34 H 0.04 1.43 6.67 -2.38 -0.02 1.42 16 35 H 0.05 2.13 7.39 -2.39 -0.02 2.11 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.92 7.05 -2.39 -0.02 1.90 16 39 H 0.42 11.63 7.08 -92.71 -0.66 10.98 16 40 H 0.28 2.37 7.68 -2.91 -0.02 2.35 16 Total: -1.00 -56.91 347.48 7.51 -49.39 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.46 Total: 15.33 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 5.36 Total: 26.24 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -3.41 Total: -100.20 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.79 Total: -17.88 kcal Atomic # 9 Polarization: -14.41 SS G_CDS: 2.28 Total: -12.13 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -56.91 7.51 -49.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154336553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.387 kcal (2) G-P(sol) polarization free energy of solvation -56.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds