Wall clock time and date at job start Tue Mar 31 2020 18:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47060 * 2 1 4 4 C 1.36935 * 119.99857 * 84.27635 * 3 2 1 5 5 H 1.08006 * 120.00072 * 28.84540 * 4 3 2 6 6 C 1.38813 * 120.00228 * 209.11332 * 4 3 2 7 7 N 1.31619 * 119.99887 * 18.62832 * 6 4 3 8 8 Si 1.86799 * 120.00399 * 198.62110 * 6 4 3 9 9 H 1.48507 * 109.46931 * 90.00069 * 8 6 4 10 10 H 1.48499 * 109.47345 * 210.00361 * 8 6 4 11 11 H 1.48498 * 109.47177 * 330.00803 * 8 6 4 12 12 C 1.46507 * 120.00446 * 264.27559 * 3 2 1 13 13 H 1.08997 * 109.47003 * 183.52605 * 12 3 2 14 14 C 1.52996 * 109.46686 * 63.52677 * 12 3 2 15 15 C 1.52998 * 109.46748 * 303.52939 * 12 3 2 16 16 N 1.46495 * 109.47270 * 304.99353 * 15 12 3 17 17 C 1.34777 * 120.00277 * 180.02562 * 16 15 12 18 18 O 1.21682 * 119.99662 * 0.02562 * 17 16 15 19 19 C 1.46722 * 120.00308 * 180.02562 * 17 16 15 20 20 O 1.35342 * 126.64238 * 359.68331 * 19 17 16 21 21 C 1.33667 * 107.68143 * 179.87803 * 20 19 17 22 22 N 1.30612 * 109.15642 * 0.39484 * 21 20 19 23 23 C 1.33697 * 108.99516 * 359.76148 * 22 21 20 24 24 C 1.50702 * 126.27326 * 179.97438 * 23 22 21 25 25 F 1.39904 * 109.46622 * 270.01559 * 24 23 22 26 26 F 1.39897 * 109.47001 * 30.01541 * 24 23 22 27 27 F 1.39897 * 109.47021 * 150.01800 * 24 23 22 28 28 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46609 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47111 * 59.99776 * 1 2 3 31 31 H 1.09004 * 109.46901 * 240.00387 * 2 1 3 32 32 H 1.08994 * 109.47541 * 120.00541 * 2 1 3 33 33 H 0.96997 * 120.00280 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47599 * 300.00199 * 14 12 3 35 35 H 1.08997 * 109.47525 * 60.00536 * 14 12 3 36 36 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 37 37 H 1.09001 * 109.47327 * 65.00127 * 15 12 3 38 38 H 1.09000 * 109.46821 * 184.99588 * 15 12 3 39 39 H 0.97002 * 120.00005 * 0.02562 * 16 15 12 40 40 H 1.08004 * 125.41718 * 180.15070 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0661 1.1800 5 1 2.3294 1.5312 2.0980 6 6 1.9981 3.4474 1.1973 7 7 1.4074 4.0627 0.1949 8 14 2.6518 4.4328 2.6433 9 1 4.0597 4.8245 2.3792 10 1 1.8245 5.6525 2.8256 11 1 2.5911 3.6048 3.8745 12 6 2.3819 2.0298 -1.2624 13 1 2.7791 3.0241 -1.0588 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1929 -1.9783 16 7 4.5830 0.9792 -1.0823 17 6 5.6457 0.2643 -1.5019 18 8 5.6592 -0.2032 -2.6253 19 6 6.7864 0.0498 -0.6043 20 8 6.9156 0.5102 0.6618 21 6 8.0966 0.0918 1.1274 22 7 8.7029 -0.5989 0.1993 23 6 7.9240 -0.6467 -0.8863 24 6 8.2448 -1.3426 -2.1840 25 9 8.9075 -0.4544 -3.0379 26 9 9.0662 -2.4464 -1.9304 27 9 7.0587 -1.7730 -2.7880 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.3113 5.0278 0.2071 34 1 0.7443 1.1537 -2.3541 35 1 0.3850 2.7442 -1.6405 36 1 1.4121 2.6301 -3.0900 37 1 3.0182 0.2300 -2.2609 38 1 3.7787 1.7185 -2.8725 39 1 4.5724 1.3522 -0.1869 40 1 8.4890 0.2960 2.1127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154464310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:19 Heat of formation + Delta-G solvation = -131.805814 kcal Electronic energy + Delta-G solvation = -30495.712111 eV Core-core repulsion = 25705.853013 eV Total energy + Delta-G solvation = -4789.859098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.06857 -47.63345 -47.48885 -43.90736 -39.44944 -37.09118 -35.63294 -34.01664 -31.98088 -31.64191 -30.77736 -28.41240 -27.23605 -25.59877 -24.14592 -23.74037 -22.30134 -21.71454 -20.71495 -19.61771 -18.94015 -18.54060 -18.22056 -17.73757 -17.15995 -16.93278 -16.10418 -15.83691 -15.06193 -14.85726 -14.63522 -14.45521 -14.23807 -14.12042 -14.04895 -13.92674 -13.66136 -13.64250 -13.38428 -12.85318 -12.51967 -12.46899 -12.05122 -12.03336 -11.71182 -11.52114 -11.39735 -11.31329 -11.12344 -10.91073 -10.61813 -10.37206 -10.10433 -9.99214 -9.68201 -9.65511 -9.62264 -8.76359 -8.60417 -6.85089 -5.96348 -3.40456 0.33929 1.85894 1.95613 2.47961 2.96426 3.22236 3.24792 3.33863 3.35196 3.39847 3.74141 4.31957 4.34944 4.37126 4.65451 4.93887 5.04198 5.18802 5.27146 5.52022 5.72250 5.96306 6.03824 6.17735 6.33920 6.38842 6.45131 6.53540 6.61517 6.70041 6.77003 6.90415 6.94678 7.19330 7.40107 7.50635 7.67045 7.71471 8.17787 8.31334 9.06273 9.68340 10.22599 11.10754 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003940 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.117717 B = 7104.570131 C = 8102.207646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.067 0.933 6 C 0.009 3.991 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.176 3.824 13 H 0.105 0.895 14 C -0.143 4.143 15 C 0.097 3.903 16 N -0.677 5.677 17 C 0.580 3.420 18 O -0.505 6.505 19 C -0.010 4.010 20 O -0.168 6.168 21 C 0.209 3.791 22 N -0.462 5.462 23 C -0.045 4.045 24 C 0.554 3.446 25 F -0.169 7.169 26 F -0.169 7.169 27 F -0.138 7.138 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.255 0.745 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.418 0.582 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.325 -6.832 -0.789 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.306 5.306 4 C -0.391 4.391 5 H 0.085 0.915 6 C -0.191 4.191 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.205 1.205 12 C 0.068 3.932 13 H 0.122 0.878 14 C -0.202 4.202 15 C -0.027 4.027 16 N -0.326 5.326 17 C 0.361 3.639 18 O -0.383 6.383 19 C -0.069 4.069 20 O -0.052 6.052 21 C -0.017 4.017 22 N -0.188 5.188 23 C -0.170 4.170 24 C 0.498 3.502 25 F -0.150 7.150 26 F -0.151 7.151 27 F -0.119 7.119 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.255 0.745 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 10.812 -7.224 -1.517 13.091 hybrid contribution -0.285 1.038 1.224 1.630 sum 10.528 -6.186 -0.293 12.214 Atomic orbital electron populations 1.22382 0.99636 0.98441 1.02142 1.20815 0.92084 0.87504 0.98134 1.44048 1.73811 1.09812 1.02948 1.19164 1.43378 0.89237 0.87297 0.91513 1.25050 0.98761 0.97869 0.97410 1.70003 1.42526 1.08666 1.32267 0.86381 0.78581 0.79847 0.82499 1.21433 1.21798 1.20462 1.20550 0.90925 0.96604 0.85076 0.87751 1.22113 1.00380 0.99713 0.98011 1.22366 0.86461 1.01301 0.92588 1.45927 1.16515 1.50703 1.19501 1.16466 0.80966 0.81083 0.85357 1.90988 1.79345 1.50320 1.17660 1.23472 0.98730 1.00442 0.84297 1.84688 1.37261 1.58323 1.24902 1.28471 0.79825 0.92842 1.00536 1.70148 1.30853 1.18618 0.99213 1.21650 0.93546 1.05341 0.96492 1.16704 0.75287 0.76500 0.81693 1.93232 1.81161 1.68513 1.72088 1.93216 1.73186 1.54487 1.94184 1.93408 1.44889 1.89671 1.83922 0.95298 0.92876 0.93100 0.94412 0.94536 0.93505 0.95035 0.89945 0.95016 0.91939 0.91789 0.74472 0.71715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.02 37.16 0.37 -2.70 16 2 C 0.14 2.68 5.73 -4.04 -0.02 2.65 16 3 N -0.58 -12.31 1.84 -165.66 -0.30 -12.62 16 4 C -0.26 -6.15 9.50 -15.06 -0.14 -6.29 16 5 H 0.07 1.59 7.90 -52.48 -0.41 1.18 16 6 C 0.01 0.22 4.84 -17.43 -0.08 0.13 16 7 N -0.89 -22.57 10.24 55.49 0.57 -22.00 16 8 Si 0.90 19.51 29.59 -169.99 -5.03 14.48 16 9 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.18 3.52 1.93 -67.93 -0.13 3.39 16 13 H 0.10 2.39 5.93 -51.93 -0.31 2.08 16 14 C -0.14 -2.76 8.25 37.16 0.31 -2.46 16 15 C 0.10 1.71 4.85 -4.05 -0.02 1.69 16 16 N -0.68 -11.47 5.38 -61.61 -0.33 -11.80 16 17 C 0.58 9.72 7.74 -12.83 -0.10 9.62 16 18 O -0.51 -9.43 13.13 5.20 0.07 -9.36 16 19 C -0.01 -0.15 7.14 -36.84 -0.26 -0.41 16 20 O -0.17 -2.09 10.57 4.42 0.05 -2.05 16 21 C 0.21 1.99 13.21 52.24 0.69 2.68 16 22 N -0.46 -5.92 11.21 -10.88 -0.12 -6.04 16 23 C -0.05 -0.67 6.49 -82.46 -0.54 -1.20 16 24 C 0.55 8.30 3.34 36.01 0.12 8.42 16 25 F -0.17 -2.54 17.30 2.25 0.04 -2.50 16 26 F -0.17 -2.42 17.27 2.25 0.04 -2.38 16 27 F -0.14 -2.26 13.47 2.25 0.03 -2.23 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.96 6.03 -51.93 -0.31 0.65 16 31 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 32 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 34 H 0.03 0.57 6.50 -51.93 -0.34 0.23 16 35 H 0.08 1.84 7.22 -51.93 -0.37 1.47 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 1.11 6.76 -51.93 -0.35 0.76 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.42 7.26 7.87 -40.82 -0.32 6.94 16 40 H 0.27 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -27.44 345.96 -4.01 -31.45 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.42 Total: 4.30 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 0.19 Total: 15.53 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.19 Total: -52.46 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.12 Total: -11.40 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.11 Total: -7.11 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.44 -4.01 -31.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154464310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.355 kcal (2) G-P(sol) polarization free energy of solvation -27.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds