Wall clock time and date at job start Tue Mar 31 2020 18:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47060 * 2 1 4 4 C 1.36935 * 119.99857 * 84.27635 * 3 2 1 5 5 H 1.08006 * 120.00072 * 28.84540 * 4 3 2 6 6 C 1.38813 * 120.00228 * 209.11332 * 4 3 2 7 7 N 1.31619 * 119.99887 * 18.62832 * 6 4 3 8 8 Si 1.86799 * 120.00399 * 198.62110 * 6 4 3 9 9 H 1.48507 * 109.46931 * 90.00069 * 8 6 4 10 10 H 1.48499 * 109.47345 * 210.00361 * 8 6 4 11 11 H 1.48498 * 109.47177 * 330.00803 * 8 6 4 12 12 C 1.46507 * 120.00446 * 264.27559 * 3 2 1 13 13 H 1.08997 * 109.47003 * 183.52605 * 12 3 2 14 14 C 1.52996 * 109.46686 * 63.52677 * 12 3 2 15 15 C 1.52998 * 109.46748 * 303.52939 * 12 3 2 16 16 N 1.46495 * 109.47270 * 304.99353 * 15 12 3 17 17 C 1.34777 * 120.00277 * 180.02562 * 16 15 12 18 18 O 1.21682 * 119.99662 * 0.02562 * 17 16 15 19 19 C 1.46722 * 120.00308 * 180.02562 * 17 16 15 20 20 O 1.35342 * 126.64238 * 359.68331 * 19 17 16 21 21 C 1.33667 * 107.68143 * 179.87803 * 20 19 17 22 22 N 1.30612 * 109.15642 * 0.39484 * 21 20 19 23 23 C 1.33697 * 108.99516 * 359.76148 * 22 21 20 24 24 C 1.50702 * 126.27326 * 179.97438 * 23 22 21 25 25 F 1.39904 * 109.46622 * 270.01559 * 24 23 22 26 26 F 1.39897 * 109.47001 * 30.01541 * 24 23 22 27 27 F 1.39897 * 109.47021 * 150.01800 * 24 23 22 28 28 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46609 * 299.99549 * 1 2 3 30 30 H 1.08993 * 109.47111 * 59.99776 * 1 2 3 31 31 H 1.09004 * 109.46901 * 240.00387 * 2 1 3 32 32 H 1.08994 * 109.47541 * 120.00541 * 2 1 3 33 33 H 0.96997 * 120.00280 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47599 * 300.00199 * 14 12 3 35 35 H 1.08997 * 109.47525 * 60.00536 * 14 12 3 36 36 H 1.09004 * 109.47129 * 180.02562 * 14 12 3 37 37 H 1.09001 * 109.47327 * 65.00127 * 15 12 3 38 38 H 1.09000 * 109.46821 * 184.99588 * 15 12 3 39 39 H 0.97002 * 120.00005 * 0.02562 * 16 15 12 40 40 H 1.08004 * 125.41718 * 180.15070 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0661 1.1800 5 1 2.3294 1.5312 2.0980 6 6 1.9981 3.4474 1.1973 7 7 1.4074 4.0627 0.1949 8 14 2.6518 4.4328 2.6433 9 1 4.0597 4.8245 2.3792 10 1 1.8245 5.6525 2.8256 11 1 2.5911 3.6048 3.8745 12 6 2.3819 2.0298 -1.2624 13 1 2.7791 3.0241 -1.0588 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1929 -1.9783 16 7 4.5830 0.9792 -1.0823 17 6 5.6457 0.2643 -1.5019 18 8 5.6592 -0.2032 -2.6253 19 6 6.7864 0.0498 -0.6043 20 8 6.9156 0.5102 0.6618 21 6 8.0966 0.0918 1.1274 22 7 8.7029 -0.5989 0.1993 23 6 7.9240 -0.6467 -0.8863 24 6 8.2448 -1.3426 -2.1840 25 9 8.9075 -0.4544 -3.0379 26 9 9.0662 -2.4464 -1.9304 27 9 7.0587 -1.7730 -2.7880 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.3113 5.0278 0.2071 34 1 0.7443 1.1537 -2.3541 35 1 0.3850 2.7442 -1.6405 36 1 1.4121 2.6301 -3.0900 37 1 3.0182 0.2300 -2.2609 38 1 3.7787 1.7185 -2.8725 39 1 4.5724 1.3522 -0.1869 40 1 8.4890 0.2960 2.1127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154464310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:18 Heat of formation + Delta-G solvation = -150.437064 kcal Electronic energy + Delta-G solvation = -30496.520023 eV Core-core repulsion = 25705.853013 eV Total energy + Delta-G solvation = -4790.667010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.24780 -48.79872 -48.69556 -44.88118 -40.78905 -38.66369 -36.64673 -35.44078 -33.73168 -32.88247 -32.12766 -30.09014 -28.46343 -26.91518 -25.81318 -24.83064 -23.42949 -23.24413 -21.92278 -21.14243 -20.14662 -19.70507 -19.40456 -19.05001 -18.52603 -18.14543 -17.23470 -17.00469 -16.57210 -16.46752 -15.80978 -15.69476 -15.64446 -15.48255 -15.24302 -15.17895 -15.04937 -14.86404 -14.69031 -14.39644 -14.05494 -13.68562 -13.60369 -13.27316 -13.08608 -13.02445 -12.98198 -12.80970 -12.61278 -12.30388 -12.20300 -12.07160 -11.72860 -11.44197 -11.27021 -11.25715 -10.71214 -10.43138 -10.09702 -8.59288 -7.79701 -5.23960 -0.73469 0.91448 0.97409 1.41340 1.51679 1.56600 1.61772 1.70438 2.02565 2.34227 2.57561 2.66613 3.18033 3.35059 3.36847 3.53967 3.65356 3.79604 4.06024 4.21436 4.45523 4.52627 4.71979 4.79365 4.84004 4.90479 4.91857 5.02940 5.09006 5.19085 5.29360 5.36178 5.61602 5.76104 5.77525 5.92563 5.99826 6.35655 6.50183 6.86015 7.26015 7.94950 8.44453 9.24958 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003940 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.117717 B = 7104.570131 C = 8102.207646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.257 4.257 5 H 0.064 0.936 6 C -0.033 4.033 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.284 1.284 10 H -0.306 1.306 11 H -0.274 1.274 12 C 0.181 3.819 13 H 0.076 0.924 14 C -0.133 4.133 15 C 0.110 3.890 16 N -0.678 5.678 17 C 0.583 3.417 18 O -0.529 6.529 19 C -0.032 4.032 20 O -0.171 6.171 21 C 0.247 3.753 22 N -0.489 5.489 23 C -0.043 4.043 24 C 0.551 3.449 25 F -0.171 7.171 26 F -0.166 7.166 27 F -0.148 7.148 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.247 0.753 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.416 0.584 40 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.530 -7.640 0.385 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.387 4.387 5 H 0.082 0.918 6 C -0.230 4.230 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.211 1.211 10 H -0.234 1.234 11 H -0.199 1.199 12 C 0.074 3.926 13 H 0.093 0.907 14 C -0.192 4.192 15 C -0.015 4.015 16 N -0.327 5.327 17 C 0.367 3.633 18 O -0.409 6.409 19 C -0.092 4.092 20 O -0.056 6.056 21 C 0.022 3.978 22 N -0.215 5.215 23 C -0.168 4.168 24 C 0.496 3.504 25 F -0.153 7.153 26 F -0.147 7.147 27 F -0.129 7.129 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.340 0.660 Dipole moment (debyes) X Y Z Total from point charges 12.036 -8.061 -0.343 14.490 hybrid contribution -0.593 1.231 0.933 1.655 sum 11.443 -6.830 0.590 13.339 Atomic orbital electron populations 1.22263 0.99105 0.99789 1.00512 1.20892 0.92413 0.86383 0.98871 1.44149 1.74146 1.10378 1.02673 1.19308 1.41992 0.89377 0.88011 0.91813 1.25563 0.99561 0.98709 0.99211 1.70142 1.43992 1.08087 1.33663 0.85549 0.77781 0.78092 0.80617 1.21067 1.23385 1.19921 1.20396 0.91631 0.95554 0.85006 0.90651 1.21956 0.99254 0.99858 0.98132 1.22106 0.86097 1.00835 0.92443 1.45848 1.16580 1.51049 1.19221 1.16566 0.81143 0.80274 0.85351 1.90970 1.79984 1.51124 1.18788 1.22896 0.98429 1.02434 0.85392 1.84705 1.38562 1.58510 1.23864 1.29883 0.77726 0.88979 1.01163 1.70202 1.31355 1.20586 0.99392 1.21614 0.93717 1.04764 0.96669 1.16803 0.74983 0.76631 0.82021 1.93221 1.81165 1.68590 1.72287 1.93217 1.73022 1.54348 1.94151 1.93383 1.45542 1.89810 1.84208 0.92440 0.95245 0.93888 0.93084 0.94296 0.94380 0.93852 0.93192 0.93515 0.91695 0.91265 0.74692 0.65999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 10.02 71.98 0.72 -4.88 16 2 C 0.14 5.13 5.73 86.38 0.49 5.62 16 3 N -0.59 -24.62 1.84 -678.03 -1.25 -25.87 16 4 C -0.26 -11.98 9.50 84.03 0.80 -11.18 16 5 H 0.06 2.98 7.90 -2.91 -0.02 2.96 16 6 C -0.03 -1.61 4.84 84.86 0.41 -1.20 16 7 N -0.91 -47.05 10.24 21.65 0.22 -46.83 16 8 Si 0.95 40.05 29.59 68.60 2.03 42.08 16 9 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.31 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 12 C 0.18 7.22 1.93 44.99 0.09 7.30 16 13 H 0.08 3.50 5.93 -2.39 -0.01 3.48 16 14 C -0.13 -5.10 8.25 71.98 0.59 -4.51 16 15 C 0.11 3.78 4.85 86.38 0.42 4.20 16 16 N -0.68 -22.48 5.38 -467.06 -2.51 -24.99 16 17 C 0.58 19.16 7.74 86.46 0.67 19.83 16 18 O -0.53 -19.56 13.13 -4.29 -0.06 -19.62 16 19 C -0.03 -0.91 7.14 24.05 0.17 -0.74 16 20 O -0.17 -3.83 10.57 -7.09 -0.07 -3.91 16 21 C 0.25 3.75 13.21 130.42 1.72 5.47 16 22 N -0.49 -11.26 11.21 -303.12 -3.40 -14.66 16 23 C -0.04 -1.21 6.49 41.83 0.27 -0.93 16 24 C 0.55 16.18 3.34 71.24 0.24 16.42 16 25 F -0.17 -5.08 17.30 44.97 0.78 -4.31 16 26 F -0.17 -4.60 17.27 44.97 0.78 -3.83 16 27 F -0.15 -4.84 13.47 44.97 0.61 -4.23 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 1.58 6.03 -2.39 -0.01 1.56 16 31 H 0.05 1.74 6.35 -2.38 -0.02 1.72 16 32 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16 33 H 0.25 12.69 8.31 -92.71 -0.77 11.92 16 34 H 0.04 1.53 6.50 -2.39 -0.02 1.51 16 35 H 0.05 2.26 7.22 -2.39 -0.02 2.24 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 2.21 6.76 -2.39 -0.02 2.20 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.42 14.15 7.87 -92.71 -0.73 13.42 16 40 H 0.33 0.31 8.06 -2.91 -0.02 0.29 16 Total: -1.00 -59.85 345.96 4.10 -55.75 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.38 Total: 15.00 kcal Atomic # 6 Polarization: 28.81 SS G_CDS: 6.60 Total: 35.40 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -6.94 Total: -112.35 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.13 Total: -23.53 kcal Atomic # 9 Polarization: -14.52 SS G_CDS: 2.16 Total: -12.36 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -59.85 4.10 -55.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154464310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.686 kcal (2) G-P(sol) polarization free energy of solvation -59.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds