Wall clock time and date at job start Tue Mar 31 2020 18:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47000 * 2 1 4 4 C 1.34828 * 117.00046 * 179.97438 * 3 2 1 5 5 O 1.21595 * 120.00297 * 0.02562 * 4 3 2 6 6 C 1.46699 * 120.00075 * 180.02562 * 4 3 2 7 7 C 1.38093 * 119.99924 * 174.03356 * 6 4 3 8 8 N 1.35115 * 120.00045 * 352.52507 * 7 6 4 9 9 C 1.39160 * 119.99905 * 174.05512 * 8 7 6 10 10 C 1.39855 * 119.95975 * 359.72531 * 9 8 7 11 11 N 1.32156 * 120.32612 * 179.97438 * 10 9 8 12 12 C 1.31916 * 120.26440 * 0.02562 * 11 10 9 13 13 C 1.40720 * 119.91338 * 359.97438 * 12 11 10 14 14 C 1.41288 * 120.16079 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00123 * 355.43106 * 14 13 12 16 16 C 1.40061 * 120.00156 * 175.43188 * 14 13 12 17 17 N 1.30735 * 119.99788 * 4.49985 * 16 14 13 18 18 Si 1.86792 * 120.00180 * 184.50439 * 16 14 13 19 19 H 1.48496 * 109.47373 * 59.99795 * 18 16 14 20 20 H 1.48496 * 109.47163 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47000 * 299.99999 * 18 16 14 22 22 N 1.32211 * 119.96086 * 179.45019 * 9 8 7 23 23 C 1.46688 * 120.00021 * 354.03248 * 6 4 3 24 24 O 1.21597 * 120.00047 * 179.97438 * 23 6 4 25 25 O 1.34837 * 120.00074 * 0.02562 * 23 6 4 26 26 C 1.45202 * 117.00061 * 180.02562 * 25 23 6 27 27 C 1.53003 * 109.46858 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.47224 * 300.00019 * 1 2 3 29 29 H 1.08999 * 109.47477 * 60.00127 * 1 2 3 30 30 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47441 * 239.99670 * 2 1 3 32 32 H 1.09005 * 109.46943 * 119.99418 * 2 1 3 33 33 H 1.08004 * 119.99855 * 172.52351 * 7 6 4 34 34 H 0.96995 * 120.00117 * 353.78271 * 8 7 6 35 35 H 1.07996 * 119.83646 * 359.97438 * 10 9 8 36 36 H 1.07996 * 120.04092 * 179.97438 * 12 11 10 37 37 H 0.96995 * 119.99831 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.47012 * 299.99210 * 26 25 23 39 39 H 1.08996 * 109.47502 * 59.99621 * 26 25 23 40 40 H 1.09006 * 109.47253 * 60.00229 * 27 26 25 41 41 H 1.09008 * 109.46884 * 179.97438 * 27 26 25 42 42 H 1.08994 * 109.47423 * 299.99732 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3506 1.5457 0.0005 5 8 4.0914 0.5814 0.0005 6 6 3.9113 2.9013 0.0011 7 6 5.2743 3.0847 0.1260 8 7 6.0755 2.0314 0.3985 9 6 7.4579 2.1914 0.4021 10 6 8.0171 3.4414 0.1180 11 7 9.3289 3.6015 0.1200 12 6 10.1227 2.5830 0.3896 13 6 9.5714 1.3206 0.6770 14 6 10.4166 0.2262 0.9671 15 1 11.4884 0.3382 0.8966 16 6 9.8645 -1.0039 1.3461 17 7 8.5672 -1.1658 1.3465 18 14 10.9817 -2.4132 1.8511 19 1 11.7915 -2.0059 3.0272 20 1 10.1570 -3.5969 2.2032 21 1 11.8847 -2.7574 0.7235 22 7 8.2409 1.1628 0.6796 23 6 3.0241 4.0620 -0.1309 24 8 3.4888 5.1857 -0.1299 25 8 1.6932 3.8830 -0.2523 26 6 0.8764 5.0767 -0.3795 27 6 -0.5950 4.6766 -0.5062 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.6998 4.0700 0.0058 34 1 5.6871 1.1647 0.5954 35 1 7.3737 4.2798 -0.1041 36 1 11.1942 2.7179 0.3898 37 1 8.1848 -2.0175 1.6093 38 1 1.0083 5.7029 0.5029 39 1 1.1795 5.6315 -1.2674 40 1 -0.8984 4.1216 0.3816 41 1 -1.2082 5.5728 -0.6012 42 1 -0.7266 4.0507 -1.3887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156815126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:03 Heat of formation + Delta-G solvation = -111.071120 kcal Electronic energy + Delta-G solvation = -28491.695427 eV Core-core repulsion = 24244.592193 eV Total energy + Delta-G solvation = -4247.103234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57061 -39.66248 -39.49237 -37.50510 -36.18024 -35.82858 -34.27406 -32.63379 -31.97772 -31.46543 -30.96532 -29.19814 -26.34356 -24.90326 -23.73830 -23.03091 -22.66166 -21.84998 -21.39578 -19.98021 -18.53665 -17.65517 -17.21657 -16.98065 -16.45891 -16.14560 -16.06510 -15.76564 -15.45060 -15.20183 -14.77136 -14.33804 -14.04486 -13.87790 -13.70980 -13.57534 -13.12641 -12.97628 -12.75754 -12.68641 -12.24240 -11.83414 -11.81655 -11.78311 -11.68999 -11.60442 -11.47393 -11.41637 -11.02223 -10.67752 -10.51337 -10.36252 -10.33184 -10.10820 -9.91869 -9.84475 -9.48106 -8.58596 -7.84043 -7.43715 -6.80227 -4.99723 0.98612 2.38189 2.45488 2.75073 2.77920 2.90114 2.92150 2.98645 2.99436 3.51376 3.61705 3.67130 4.39881 4.76811 4.93129 4.95624 4.96851 5.02845 5.07574 5.25783 5.28995 5.34092 5.43538 5.45683 5.66475 5.71578 5.74618 5.75278 5.77984 5.87852 5.92255 5.96337 6.07117 6.35101 6.57925 6.67744 6.70449 6.76993 7.09659 7.37560 7.58296 7.83998 8.06493 8.12170 8.19424 8.35994 8.93211 9.44631 9.86941 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.003066 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.902800 B = 9130.301548 C =10985.658797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.335 6.335 4 C 0.527 3.473 5 O -0.536 6.536 6 C -0.379 4.379 7 C 0.331 3.669 8 N -0.567 5.567 9 C 0.304 3.696 10 C -0.146 4.146 11 N -0.404 5.404 12 C -0.067 4.067 13 C 0.226 3.774 14 C -0.395 4.395 15 H 0.099 0.901 16 C 0.060 3.940 17 N -0.699 5.699 18 Si 0.919 3.081 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.260 1.260 22 N -0.471 5.471 23 C 0.540 3.460 24 O -0.540 6.540 25 O -0.338 6.338 26 C 0.063 3.937 27 C -0.149 4.149 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.183 0.817 34 H 0.431 0.569 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.283 0.717 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.462 2.222 -1.217 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 O -0.251 6.251 4 C 0.378 3.622 5 O -0.429 6.429 6 C -0.392 4.392 7 C 0.182 3.818 8 N -0.185 5.185 9 C 0.064 3.936 10 C -0.305 4.305 11 N -0.114 5.114 12 C -0.239 4.239 13 C 0.100 3.900 14 C -0.427 4.427 15 H 0.117 0.883 16 C -0.168 4.168 17 N -0.319 5.319 18 Si 0.742 3.258 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.185 1.185 22 N -0.193 5.193 23 C 0.389 3.611 24 O -0.433 6.433 25 O -0.255 6.255 26 C -0.012 4.012 27 C -0.206 4.206 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.200 0.800 34 H 0.282 0.718 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.209 2.018 -1.154 14.398 hybrid contribution 0.157 -1.043 0.283 1.092 sum -14.052 0.975 -0.871 14.113 Atomic orbital electron populations 1.21750 0.93001 1.02377 1.03368 1.22943 0.95038 0.81037 1.02379 1.86714 1.23241 1.30790 1.84357 1.20558 0.80705 0.88876 0.72087 1.90628 1.59335 1.42508 1.50423 1.18697 0.91248 0.89073 1.40184 1.22263 0.88253 0.93611 0.77650 1.42857 1.04920 1.14285 1.56421 1.19668 0.83927 0.93113 0.96844 1.22114 0.92608 0.95102 1.20710 1.67669 1.03612 1.32803 1.07351 1.23212 0.99093 0.90443 1.11134 1.19148 0.87630 0.92953 0.90307 1.19759 0.94683 0.93112 1.35109 0.88330 1.26248 0.95674 1.00486 0.94420 1.70035 1.11744 1.24654 1.25460 0.86170 0.80319 0.79075 0.80239 1.18476 1.19911 1.18477 1.68881 1.04550 1.26276 1.19559 1.19974 0.81073 0.87807 0.72269 1.90833 1.76718 1.25489 1.50253 1.86711 1.18329 1.36620 1.83793 1.22911 0.90228 0.86067 1.01970 1.21758 0.93175 1.02325 1.03350 0.91636 0.91609 0.90730 0.91547 0.91526 0.80049 0.71790 0.84941 0.84050 0.90572 0.91620 0.91630 0.91597 0.90754 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.94 16 2 C 0.06 0.75 6.20 37.16 0.23 0.98 16 3 O -0.34 -5.13 8.34 -47.95 -0.40 -5.53 16 4 C 0.53 9.22 7.82 34.15 0.27 9.49 16 5 O -0.54 -10.60 13.48 -19.34 -0.26 -10.86 16 6 C -0.38 -6.41 6.01 -103.12 -0.62 -7.03 16 7 C 0.33 5.66 9.63 -16.16 -0.16 5.51 16 8 N -0.57 -11.39 5.15 -11.57 -0.06 -11.45 16 9 C 0.30 6.98 7.63 -154.76 -1.18 5.80 16 10 C -0.15 -3.20 10.48 -16.81 -0.18 -3.37 16 11 N -0.40 -9.34 10.47 -12.13 -0.13 -9.47 16 12 C -0.07 -1.55 10.97 -16.58 -0.18 -1.74 16 13 C 0.23 5.69 6.54 -84.83 -0.56 5.13 16 14 C -0.40 -9.44 9.15 -37.74 -0.35 -9.79 16 15 H 0.10 2.11 7.85 -52.49 -0.41 1.69 16 16 C 0.06 1.38 5.49 -17.34 -0.10 1.29 16 17 N -0.70 -17.21 11.50 55.55 0.64 -16.57 16 18 Si 0.92 16.83 29.56 -169.99 -5.03 11.80 16 19 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 22 N -0.47 -12.14 8.08 -10.09 -0.08 -12.22 16 23 C 0.54 8.86 7.87 34.14 0.27 9.13 16 24 O -0.54 -9.56 16.09 -19.34 -0.31 -9.87 16 25 O -0.34 -4.93 8.33 -47.98 -0.40 -5.33 16 26 C 0.06 0.70 6.20 37.16 0.23 0.93 16 27 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.18 2.79 5.44 -52.48 -0.29 2.50 16 34 H 0.43 9.23 5.48 -40.86 -0.22 9.01 16 35 H 0.13 2.47 5.96 -52.49 -0.31 2.16 16 36 H 0.14 2.90 8.06 -52.49 -0.42 2.48 16 37 H 0.28 6.35 8.29 -40.82 -0.34 6.02 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -29.61 369.40 -7.03 -36.64 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.73 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: -1.55 Total: 14.57 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.37 Total: -49.71 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.37 Total: -31.60 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.61 -7.03 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156815126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.435 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds