Wall clock time and date at job start Tue Mar 31 2020 18:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.47000 * 2 1 4 4 C 1.34828 * 117.00046 * 179.97438 * 3 2 1 5 5 O 1.21595 * 120.00297 * 0.02562 * 4 3 2 6 6 C 1.46699 * 120.00075 * 180.02562 * 4 3 2 7 7 C 1.38093 * 119.99924 * 174.03356 * 6 4 3 8 8 N 1.35115 * 120.00045 * 352.52507 * 7 6 4 9 9 C 1.39160 * 119.99905 * 174.05512 * 8 7 6 10 10 C 1.39855 * 119.95975 * 359.72531 * 9 8 7 11 11 N 1.32156 * 120.32612 * 179.97438 * 10 9 8 12 12 C 1.31916 * 120.26440 * 0.02562 * 11 10 9 13 13 C 1.40720 * 119.91338 * 359.97438 * 12 11 10 14 14 C 1.41288 * 120.16079 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00123 * 355.43106 * 14 13 12 16 16 C 1.40061 * 120.00156 * 175.43188 * 14 13 12 17 17 N 1.30735 * 119.99788 * 4.49985 * 16 14 13 18 18 Si 1.86792 * 120.00180 * 184.50439 * 16 14 13 19 19 H 1.48496 * 109.47373 * 59.99795 * 18 16 14 20 20 H 1.48496 * 109.47163 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47000 * 299.99999 * 18 16 14 22 22 N 1.32211 * 119.96086 * 179.45019 * 9 8 7 23 23 C 1.46688 * 120.00021 * 354.03248 * 6 4 3 24 24 O 1.21597 * 120.00047 * 179.97438 * 23 6 4 25 25 O 1.34837 * 120.00074 * 0.02562 * 23 6 4 26 26 C 1.45202 * 117.00061 * 180.02562 * 25 23 6 27 27 C 1.53003 * 109.46858 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.47224 * 300.00019 * 1 2 3 29 29 H 1.08999 * 109.47477 * 60.00127 * 1 2 3 30 30 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47441 * 239.99670 * 2 1 3 32 32 H 1.09005 * 109.46943 * 119.99418 * 2 1 3 33 33 H 1.08004 * 119.99855 * 172.52351 * 7 6 4 34 34 H 0.96995 * 120.00117 * 353.78271 * 8 7 6 35 35 H 1.07996 * 119.83646 * 359.97438 * 10 9 8 36 36 H 1.07996 * 120.04092 * 179.97438 * 12 11 10 37 37 H 0.96995 * 119.99831 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.47012 * 299.99210 * 26 25 23 39 39 H 1.08996 * 109.47502 * 59.99621 * 26 25 23 40 40 H 1.09006 * 109.47253 * 60.00229 * 27 26 25 41 41 H 1.09008 * 109.46884 * 179.97438 * 27 26 25 42 42 H 1.08994 * 109.47423 * 299.99732 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3506 1.5457 0.0005 5 8 4.0914 0.5814 0.0005 6 6 3.9113 2.9013 0.0011 7 6 5.2743 3.0847 0.1260 8 7 6.0755 2.0314 0.3985 9 6 7.4579 2.1914 0.4021 10 6 8.0171 3.4414 0.1180 11 7 9.3289 3.6015 0.1200 12 6 10.1227 2.5830 0.3896 13 6 9.5714 1.3206 0.6770 14 6 10.4166 0.2262 0.9671 15 1 11.4884 0.3382 0.8966 16 6 9.8645 -1.0039 1.3461 17 7 8.5672 -1.1658 1.3465 18 14 10.9817 -2.4132 1.8511 19 1 11.7915 -2.0059 3.0272 20 1 10.1570 -3.5969 2.2032 21 1 11.8847 -2.7574 0.7235 22 7 8.2409 1.1628 0.6796 23 6 3.0241 4.0620 -0.1309 24 8 3.4888 5.1857 -0.1299 25 8 1.6932 3.8830 -0.2523 26 6 0.8764 5.0767 -0.3795 27 6 -0.5950 4.6766 -0.5062 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.6998 4.0700 0.0058 34 1 5.6871 1.1647 0.5954 35 1 7.3737 4.2798 -0.1041 36 1 11.1942 2.7179 0.3898 37 1 8.1848 -2.0175 1.6093 38 1 1.0083 5.7029 0.5029 39 1 1.1795 5.6315 -1.2674 40 1 -0.8984 4.1216 0.3816 41 1 -1.2082 5.5728 -0.6012 42 1 -0.7266 4.0507 -1.3887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156815126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:02 Heat of formation + Delta-G solvation = -126.976631 kcal Electronic energy + Delta-G solvation = -28492.385142 eV Core-core repulsion = 24244.592193 eV Total energy + Delta-G solvation = -4247.792949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99074 -41.20629 -40.85967 -38.96198 -37.41626 -37.24412 -36.01631 -34.24207 -33.30130 -32.34338 -32.28037 -30.77883 -28.10006 -26.25259 -24.89498 -24.67317 -23.81103 -23.10459 -22.78326 -21.37224 -20.00926 -19.26623 -18.75661 -18.27277 -17.68898 -17.66260 -17.25514 -17.18797 -17.01100 -16.72236 -16.39531 -15.81109 -15.39995 -15.18108 -14.93601 -14.78745 -14.50813 -14.08736 -13.77792 -13.54862 -13.48216 -13.42077 -13.35710 -13.02032 -12.86711 -12.77013 -12.73364 -12.49969 -12.33112 -12.14280 -11.87276 -11.80672 -11.64431 -11.47544 -11.36245 -11.30221 -11.13299 -10.25732 -9.61747 -9.05374 -8.52584 -6.80772 -0.48057 0.67698 1.01380 1.09937 1.39950 1.44542 1.52625 1.54190 1.76223 2.14312 2.15086 2.23241 2.67992 3.42053 3.64001 3.75038 3.93064 4.02560 4.05046 4.05580 4.13623 4.17023 4.21501 4.28181 4.36954 4.43235 4.47637 4.69800 4.83475 4.88348 4.97461 4.98587 5.03394 5.03618 5.15540 5.23517 5.38956 5.46833 5.55120 5.73296 5.89452 6.17103 6.37066 6.57705 6.72014 6.89352 7.15613 7.67300 8.17975 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.003066 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.902800 B = 9130.301548 C =10985.658797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.333 6.333 4 C 0.525 3.475 5 O -0.562 6.562 6 C -0.373 4.373 7 C 0.333 3.667 8 N -0.576 5.576 9 C 0.301 3.699 10 C -0.149 4.149 11 N -0.411 5.411 12 C -0.079 4.079 13 C 0.196 3.804 14 C -0.417 4.417 15 H 0.117 0.883 16 C 0.017 3.983 17 N -0.740 5.740 18 Si 0.998 3.002 19 H -0.253 1.253 20 H -0.273 1.273 21 H -0.252 1.252 22 N -0.508 5.508 23 C 0.544 3.456 24 O -0.553 6.553 25 O -0.342 6.342 26 C 0.052 3.948 27 C -0.142 4.142 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.201 0.799 34 H 0.424 0.576 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.286 0.714 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 2.343 -1.250 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 O -0.249 6.249 4 C 0.377 3.623 5 O -0.457 6.457 6 C -0.385 4.385 7 C 0.188 3.812 8 N -0.195 5.195 9 C 0.061 3.939 10 C -0.308 4.308 11 N -0.122 5.122 12 C -0.250 4.250 13 C 0.070 3.930 14 C -0.448 4.448 15 H 0.135 0.865 16 C -0.207 4.207 17 N -0.360 5.360 18 Si 0.817 3.183 19 H -0.176 1.176 20 H -0.198 1.198 21 H -0.176 1.176 22 N -0.230 5.230 23 C 0.393 3.607 24 O -0.447 6.447 25 O -0.258 6.258 26 C -0.021 4.021 27 C -0.199 4.199 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.217 0.783 34 H 0.273 0.727 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.421 2.190 -1.203 15.622 hybrid contribution 0.277 -1.001 0.251 1.069 sum -15.143 1.189 -0.952 15.220 Atomic orbital electron populations 1.21762 0.89886 1.04118 1.03801 1.23288 0.97432 0.79536 1.02068 1.86715 1.21797 1.32685 1.83671 1.20705 0.81364 0.88715 0.71532 1.90623 1.60089 1.43370 1.51596 1.18876 0.91395 0.89418 1.38839 1.22510 0.88174 0.93528 0.77030 1.42757 1.04021 1.14703 1.58032 1.19898 0.84842 0.93079 0.96105 1.22577 0.92694 0.95683 1.19858 1.67718 1.04160 1.32763 1.07565 1.23492 1.00177 0.90023 1.11358 1.19624 0.88014 0.94247 0.91074 1.20245 0.95634 0.93590 1.35369 0.86496 1.27245 0.96951 1.02867 0.93634 1.70153 1.13807 1.25528 1.26555 0.85002 0.78056 0.75219 0.80067 1.17645 1.19778 1.17579 1.68851 1.05262 1.27810 1.21112 1.19820 0.81771 0.87128 0.71953 1.90824 1.77181 1.25823 1.50869 1.86704 1.17407 1.38496 1.83176 1.23294 0.91388 0.85174 1.02256 1.21779 0.91073 1.03608 1.03427 0.91218 0.91090 0.88323 0.91885 0.91948 0.78276 0.72672 0.81865 0.81959 0.90281 0.91379 0.91354 0.91491 0.88140 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.29 71.98 0.74 -1.44 16 2 C 0.05 1.22 6.20 71.98 0.45 1.66 16 3 O -0.33 -10.02 8.34 -50.60 -0.42 -10.45 16 4 C 0.53 18.48 7.82 70.03 0.55 19.03 16 5 O -0.56 -22.80 13.48 19.53 0.26 -22.54 16 6 C -0.37 -12.51 6.01 -18.89 -0.11 -12.63 16 7 C 0.33 11.36 9.63 84.15 0.81 12.17 16 8 N -0.58 -23.70 5.15 -190.50 -0.98 -24.68 16 9 C 0.30 14.10 7.63 133.24 1.02 15.12 16 10 C -0.15 -6.50 10.48 85.04 0.89 -5.61 16 11 N -0.41 -18.99 10.47 -192.28 -2.01 -21.00 16 12 C -0.08 -3.72 10.97 85.29 0.94 -2.79 16 13 C 0.20 10.13 6.54 40.17 0.26 10.39 16 14 C -0.42 -20.17 9.15 23.46 0.21 -19.96 16 15 H 0.12 4.97 7.85 -2.91 -0.02 4.95 16 16 C 0.02 0.81 5.49 85.30 0.47 1.28 16 17 N -0.74 -37.46 11.50 21.84 0.25 -37.21 16 18 Si 1.00 34.26 29.56 68.60 2.03 36.29 16 19 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 20 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 21 H -0.25 -8.24 7.11 99.48 0.71 -7.54 16 22 N -0.51 -27.00 8.08 -185.83 -1.50 -28.50 16 23 C 0.54 17.34 7.87 70.03 0.55 17.89 16 24 O -0.55 -18.90 16.09 19.52 0.31 -18.59 16 25 O -0.34 -9.50 8.33 -50.70 -0.42 -9.92 16 26 C 0.05 1.08 6.20 71.98 0.45 1.52 16 27 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.20 5.94 5.44 -2.91 -0.02 5.92 16 34 H 0.42 18.85 5.48 -93.31 -0.51 18.34 16 35 H 0.16 5.89 5.96 -2.91 -0.02 5.87 16 36 H 0.16 6.65 8.06 -2.91 -0.02 6.63 16 37 H 0.29 13.24 8.29 -92.71 -0.77 12.47 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -65.07 369.40 6.04 -59.03 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: 0.57 Total: 42.13 kcal Atomic # 6 Polarization: 27.49 SS G_CDS: 7.96 Total: 35.45 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -4.25 Total: -111.40 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -0.27 Total: -61.50 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Total: -65.07 6.04 -59.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156815126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.948 kcal (2) G-P(sol) polarization free energy of solvation -65.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds