Wall clock time and date at job start Tue Mar 31 2020 19:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34763 * 117.00082 * 2 1 4 4 O 1.21524 * 120.00029 * 359.97438 * 3 2 1 5 5 C 1.47291 * 120.00078 * 180.27627 * 3 2 1 6 6 C 1.40042 * 120.61300 * 353.99144 * 5 3 2 7 7 C 1.38302 * 118.36563 * 180.02562 * 6 5 3 8 8 N 1.48017 * 120.24728 * 179.97438 * 7 6 5 9 9 O 1.21798 * 119.99672 * 0.02562 * 8 7 6 10 10 O 1.21795 * 120.00344 * 179.97438 * 8 7 6 11 11 C 1.38398 * 119.51401 * 359.97438 * 7 6 5 12 12 N 1.31843 * 121.22832 * 0.02562 * 11 7 6 13 13 C 1.32430 * 121.78298 * 359.66114 * 12 11 7 14 14 N 1.38230 * 119.83373 * 180.31422 * 13 12 11 15 15 C 1.46508 * 119.99882 * 5.72963 * 14 13 12 16 16 H 1.08995 * 109.41048 * 35.00411 * 15 14 13 17 17 C 1.52955 * 109.40954 * 154.86085 * 15 14 13 18 18 C 1.53237 * 109.40202 * 183.70797 * 17 15 14 19 19 C 1.51269 * 108.53158 * 305.37070 * 18 17 15 20 20 C 1.37882 * 120.85059 * 231.32204 * 19 18 17 21 21 N 1.31518 * 119.99434 * 0.02562 * 20 19 18 22 22 Si 1.86792 * 120.00284 * 180.02562 * 20 19 18 23 23 H 1.48506 * 109.47270 * 90.00292 * 22 20 19 24 24 H 1.48501 * 109.47302 * 210.00225 * 22 20 19 25 25 H 1.48504 * 109.47208 * 330.00482 * 22 20 19 26 26 C 1.51261 * 118.30236 * 51.35214 * 19 18 17 27 27 C 1.52956 * 109.41663 * 275.14394 * 15 14 13 28 28 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47222 * 300.00164 * 1 2 3 30 30 H 1.08997 * 109.47239 * 60.00370 * 1 2 3 31 31 H 1.08003 * 120.82171 * 359.97281 * 6 5 3 32 32 H 1.07998 * 119.38758 * 180.02562 * 11 7 6 33 33 H 0.97002 * 120.00320 * 185.73959 * 14 13 12 34 34 H 1.09001 * 109.48444 * 303.68624 * 17 15 14 35 35 H 1.08997 * 109.48459 * 63.72619 * 17 15 14 36 36 H 1.08991 * 109.62798 * 65.08714 * 18 17 15 37 37 H 1.09001 * 109.62458 * 185.47066 * 18 17 15 38 38 H 0.97001 * 119.99825 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.63138 * 68.36273 * 26 19 18 40 40 H 1.09003 * 109.62955 * 188.74001 * 26 19 18 41 41 H 1.09000 * 109.47992 * 296.28131 * 27 15 14 42 42 H 1.09010 * 109.47969 * 56.31323 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5347 1.2778 -0.0062 6 6 4.3101 0.1179 0.1141 7 6 5.6873 0.2442 0.1034 8 7 6.5469 -0.9543 0.2283 9 8 6.0418 -2.0569 0.3407 10 8 7.7592 -0.8380 0.2178 11 6 6.2559 1.4994 -0.0251 12 7 5.5089 2.5800 -0.1372 13 6 4.1861 2.5164 -0.1390 14 7 3.4421 3.6745 -0.2654 15 6 4.1126 4.9515 -0.5227 16 1 4.9783 4.7834 -1.1632 17 6 3.1409 5.9043 -1.2208 18 6 3.8688 7.2059 -1.5728 19 6 4.4920 7.7642 -0.3126 20 6 4.2795 9.0744 0.0609 21 7 3.5262 9.8558 -0.6818 22 14 5.0614 9.7394 1.6215 23 1 6.3962 10.3072 1.3033 24 1 4.1959 10.8009 2.1953 25 1 5.2138 8.6386 2.6067 26 6 5.3550 6.8486 0.5271 27 6 4.5717 5.5608 0.8030 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8442 -0.8513 0.2138 32 1 7.3315 1.5956 -0.0337 33 1 2.4761 3.6418 -0.1837 34 1 2.7672 5.4386 -2.1327 35 1 2.3056 6.1233 -0.5557 36 1 4.6478 7.0026 -2.3075 37 1 3.1579 7.9238 -1.9820 38 1 3.3763 10.7774 -0.4190 39 1 6.2717 6.6122 -0.0132 40 1 5.6014 7.3394 1.4687 41 1 3.7018 5.7881 1.4192 42 1 5.2129 4.8515 1.3265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:12 Heat of formation + Delta-G solvation = -66.695207 kcal Electronic energy + Delta-G solvation = -28980.407029 eV Core-core repulsion = 24735.228079 eV Total energy + Delta-G solvation = -4245.178950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.26343 -42.30839 -40.95985 -39.28705 -37.84347 -37.59448 -36.22951 -34.38734 -33.98314 -32.19964 -31.49785 -29.27332 -28.64288 -27.08990 -26.14540 -24.58253 -23.48252 -23.19489 -22.70786 -21.27582 -20.51136 -19.82808 -19.21997 -18.72972 -18.56300 -18.17323 -17.93420 -17.66672 -17.48628 -16.44312 -16.25884 -15.92577 -15.54670 -15.13078 -14.80662 -14.65129 -14.53846 -14.38770 -14.28130 -14.06036 -13.53622 -13.09906 -12.94242 -12.83299 -12.64336 -12.62149 -12.57356 -12.20713 -12.18636 -12.00569 -11.94787 -11.93042 -11.83902 -11.56203 -11.32564 -11.10350 -10.86965 -10.62269 -10.53606 -9.41386 -8.18946 -6.13439 -1.17414 -0.82102 0.26507 0.33321 1.11544 1.37232 1.38492 1.41462 1.48583 1.79412 2.22635 2.39458 2.90288 3.07705 3.11741 3.16915 3.30771 3.85035 3.89804 3.94565 4.08649 4.24911 4.32210 4.34459 4.41410 4.55591 4.64755 4.70557 4.82780 4.90460 4.99599 5.02130 5.07764 5.17264 5.24246 5.29669 5.54290 5.57684 5.69971 5.74962 5.76168 5.91962 6.31102 6.36975 6.57428 6.68083 6.92769 7.44977 8.91747 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.003325 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.410275 B = 8420.180671 C =10028.170054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.532 3.468 4 O -0.530 6.530 5 C -0.265 4.265 6 C 0.110 3.890 7 C -0.190 4.190 8 N 0.053 4.947 9 O -0.183 6.183 10 O -0.178 6.178 11 C 0.276 3.724 12 N -0.536 5.536 13 C 0.482 3.518 14 N -0.661 5.661 15 C 0.161 3.839 16 H 0.086 0.914 17 C -0.105 4.105 18 C 0.012 3.988 19 C -0.499 4.499 20 C 0.023 3.977 21 N -0.931 5.931 22 Si 0.938 3.062 23 H -0.274 1.274 24 H -0.295 1.295 25 H -0.250 1.250 26 C -0.018 4.018 27 C -0.103 4.103 28 H 0.139 0.861 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.193 0.807 32 H 0.212 0.788 33 H 0.426 0.574 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.006 0.994 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 -21.877 2.140 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.380 3.620 4 O -0.422 6.422 5 C -0.276 4.276 6 C 0.085 3.915 7 C -0.281 4.281 8 N 0.566 4.434 9 O -0.394 6.394 10 O -0.390 6.390 11 C 0.108 3.892 12 N -0.255 5.255 13 C 0.238 3.762 14 N -0.293 5.293 15 C 0.057 3.943 16 H 0.104 0.896 17 C -0.144 4.144 18 C -0.026 4.026 19 C -0.519 4.519 20 C -0.175 4.175 21 N -0.571 5.571 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.222 1.222 25 H -0.174 1.174 26 C -0.056 4.056 27 C -0.142 4.142 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.211 0.789 32 H 0.228 0.772 33 H 0.276 0.724 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.734 -19.791 1.938 20.073 hybrid contribution -0.596 0.017 0.692 0.914 sum -3.330 -19.774 2.630 20.224 Atomic orbital electron populations 1.23700 0.73354 1.06342 1.03028 1.86528 1.25864 1.30208 1.83562 1.20429 0.87660 0.82152 0.71804 1.90571 1.66437 1.36270 1.48879 1.19074 0.91036 0.92663 1.24794 1.21569 0.89983 1.00150 0.79810 1.21699 0.91571 0.86903 1.27914 1.43301 1.01256 1.02072 0.96741 1.94529 1.77701 1.12826 1.54342 1.94544 0.96405 1.93054 1.54996 1.23166 1.02545 0.83464 0.80044 1.68031 1.03528 1.30245 1.23679 1.18853 0.88640 0.85934 0.82775 1.46442 1.11699 1.04795 1.66345 1.21044 0.95551 0.80372 0.97285 0.89579 1.21748 0.97649 0.96469 0.98520 1.19265 0.95421 0.92507 0.95369 1.20635 1.28465 0.95102 1.07648 1.25598 0.95438 0.96951 0.99545 1.69967 1.39659 1.07207 1.40226 0.85842 0.78448 0.77949 0.81252 1.19941 1.22164 1.17432 1.19778 0.95645 0.93557 0.96631 1.21774 0.99357 0.97410 0.95674 0.84292 0.91512 0.91565 0.78942 0.77201 0.72406 0.92793 0.93514 0.97549 0.95119 0.92826 0.95366 0.94540 0.93952 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.51 16 2 O -0.35 -5.77 9.90 -56.74 -0.56 -6.33 16 3 C 0.53 11.62 7.88 70.20 0.55 12.17 16 4 O -0.53 -14.07 13.47 19.76 0.27 -13.80 16 5 C -0.27 -5.74 5.91 -19.89 -0.12 -5.86 16 6 C 0.11 1.97 9.22 22.72 0.21 2.18 16 7 C -0.19 -3.74 6.86 36.43 0.25 -3.49 16 8 N 0.05 1.19 4.45 -46.34 -0.21 0.99 16 9 O -0.18 -4.32 18.50 18.89 0.35 -3.97 16 10 O -0.18 -4.24 18.45 18.89 0.35 -3.90 16 11 C 0.28 5.47 10.70 84.73 0.91 6.38 16 12 N -0.54 -13.43 9.11 -192.49 -1.75 -15.19 16 13 C 0.48 12.55 7.45 133.67 1.00 13.55 16 14 N -0.66 -19.70 5.08 -324.06 -1.65 -21.35 16 15 C 0.16 5.61 2.31 44.96 0.10 5.71 16 16 H 0.09 3.06 7.63 -2.39 -0.02 3.04 16 17 C -0.11 -4.14 5.40 30.66 0.17 -3.98 16 18 C 0.01 0.59 5.96 30.11 0.18 0.77 16 19 C -0.50 -25.15 5.51 -16.17 -0.09 -25.24 16 20 C 0.02 1.23 5.46 84.66 0.46 1.70 16 21 N -0.93 -53.46 12.73 21.45 0.27 -53.18 16 22 Si 0.94 42.05 27.53 68.60 1.89 43.94 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.25 -10.49 6.11 99.48 0.61 -9.88 16 26 C -0.02 -0.78 5.60 30.11 0.17 -0.61 16 27 C -0.10 -3.86 5.51 30.66 0.17 -3.69 16 28 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.19 2.61 7.33 -2.91 -0.02 2.59 16 32 H 0.21 3.12 7.59 -2.91 -0.02 3.10 16 33 H 0.43 12.84 5.11 -94.17 -0.48 12.36 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.03 1.64 7.08 -2.39 -0.02 1.62 16 38 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 1.56 4.59 -2.39 -0.01 1.55 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.96 8.01 -2.38 -0.02 1.94 16 Total: -1.00 -61.34 354.69 4.62 -56.72 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.51 Total: 14.97 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.16 Total: 1.10 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -3.33 Total: -88.73 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: 0.40 Total: -28.00 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.89 Total: 43.94 kcal Total: -61.34 4.62 -56.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.975 kcal (2) G-P(sol) polarization free energy of solvation -61.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds