Wall clock time and date at job start Tue Mar 31 2020 19:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00110 * 2 1 4 4 O 1.20834 * 119.99366 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00548 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.87543 * 41.02389 * 5 3 2 7 7 C 1.54322 * 109.88500 * 279.99896 * 5 3 2 8 8 C 1.55135 * 103.01804 * 218.14775 * 7 5 3 9 9 H 1.09003 * 110.99101 * 277.52577 * 8 7 5 10 10 N 1.46496 * 110.99261 * 153.74980 * 8 7 5 11 11 C 1.37655 * 120.00231 * 154.99874 * 10 8 7 12 12 C 1.40187 * 119.81317 * 359.97438 * 11 10 8 13 13 C 1.35798 * 120.19431 * 180.02562 * 12 11 10 14 14 C 1.41758 * 119.80186 * 359.97305 * 13 12 11 15 15 C 1.39511 * 120.18365 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99924 * 144.97567 * 15 14 13 17 17 C 1.46591 * 120.00290 * 324.97955 * 15 14 13 18 18 N 1.29498 * 119.99856 * 351.59220 * 17 15 14 19 19 Si 1.86802 * 120.00220 * 171.58911 * 17 15 14 20 20 H 1.48503 * 109.46967 * 60.00226 * 19 17 15 21 21 H 1.48505 * 109.46874 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47244 * 299.99962 * 19 17 15 23 23 C 1.41717 * 119.63329 * 0.02562 * 14 13 12 24 24 N 1.48011 * 120.10268 * 180.27736 * 23 14 13 25 25 O 1.31695 * 120.00637 * 173.55058 * 24 23 14 26 26 O 1.31706 * 119.99469 * 353.55539 * 24 23 14 27 27 C 1.35833 * 119.80275 * 0.02562 * 23 14 13 28 28 C 1.54905 * 101.65608 * 35.65052 * 8 7 5 29 29 N 1.47436 * 110.02667 * 162.14857 * 5 3 2 30 30 H 1.08993 * 109.46966 * 60.00095 * 1 2 3 31 31 H 1.09005 * 109.46623 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46876 * 299.99968 * 1 2 3 33 33 H 1.09000 * 110.70480 * 99.76561 * 7 5 3 34 34 H 1.08998 * 110.70665 * 336.52649 * 7 5 3 35 35 H 0.97001 * 119.99741 * 334.98952 * 10 8 7 36 36 H 1.08003 * 119.90008 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.10203 * 179.97438 * 13 12 11 38 38 H 0.96994 * 119.99978 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.90645 * 180.02562 * 27 23 14 40 40 H 1.09004 * 110.36751 * 81.75973 * 28 8 7 41 41 H 1.08999 * 110.37781 * 204.10188 * 28 8 7 42 42 H 1.00892 * 111.00090 * 240.76182 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5664 1.2750 -0.0006 6 1 3.9767 0.5222 -0.6738 7 6 4.1043 1.0506 1.4283 8 6 5.2904 2.0467 1.5156 9 1 6.1890 1.6243 1.0657 10 7 5.5395 2.4459 2.9030 11 6 6.7907 2.8779 3.2808 12 6 7.8238 2.9339 2.3350 13 6 9.0612 3.3584 2.6994 14 6 9.3063 3.7461 4.0407 15 6 10.5744 4.1840 4.4237 16 1 10.6757 4.9606 5.1674 17 6 11.7693 3.5901 3.8167 18 7 11.6583 2.5525 3.0498 19 14 13.4519 4.3300 4.1493 20 1 13.7316 4.2882 5.6072 21 1 14.4874 3.5513 3.4235 22 1 13.4744 5.7391 3.6812 23 6 8.2562 3.6864 4.9905 24 7 8.4990 4.0946 6.3923 25 8 7.4954 4.1601 7.2424 26 8 9.7189 4.3924 6.7895 27 6 7.0247 3.2584 4.6093 28 6 4.7596 3.2393 0.6817 29 7 4.0013 2.6183 -0.4251 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.4523 0.0251 1.5525 34 1 3.3425 1.2926 2.1694 35 1 4.8227 2.4058 3.5553 36 1 7.6353 2.6377 1.3136 37 1 9.8561 3.4005 1.9696 38 1 12.4489 2.1598 2.6479 39 1 6.2231 3.2127 5.3316 40 1 4.1032 3.8637 1.2879 41 1 5.5893 3.8278 0.2901 42 1 4.5604 2.5691 -1.2635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164308307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:49 Heat of formation + Delta-G solvation = -31.753080 kcal Electronic energy + Delta-G solvation = -28238.443453 eV Core-core repulsion = 23994.779707 eV Total energy + Delta-G solvation = -4243.663745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81837 -39.27028 -38.27482 -36.64528 -36.30747 -35.08760 -33.55819 -32.41033 -30.49721 -30.37674 -30.10749 -28.29623 -27.55171 -25.48482 -24.14396 -23.39297 -21.86534 -21.43392 -20.48079 -19.84273 -18.27369 -18.10534 -17.14861 -17.04684 -16.68570 -16.28183 -16.25591 -15.76798 -15.39368 -15.12328 -14.43099 -14.15533 -14.00237 -13.84226 -13.75040 -13.27528 -13.08854 -13.05055 -12.55142 -12.50212 -12.36141 -12.24170 -11.87750 -11.73557 -11.58106 -11.48907 -11.30595 -11.10027 -11.01667 -10.61370 -10.51343 -10.38479 -10.00603 -9.48829 -9.31494 -9.02104 -8.90217 -8.71963 -8.33410 -7.67001 -7.01419 -4.79860 1.01473 2.03684 2.36088 2.40530 2.74898 2.77885 2.82261 2.92692 3.20637 3.48221 3.69211 3.93615 4.07620 4.29089 4.47231 4.61156 4.79478 4.83402 4.87974 4.90690 4.99263 5.06759 5.23811 5.38565 5.56058 5.68841 5.72684 5.77059 6.01651 6.13610 6.16096 6.27692 6.35481 6.38935 6.72429 6.76716 6.98455 6.99639 7.24218 7.32922 7.53372 7.64245 7.86579 7.91820 8.05277 8.14241 8.35576 8.90568 9.22299 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.002535 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.835344 B =11040.733971 C =12089.132645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.483 6.483 5 C 0.092 3.908 6 H 0.101 0.899 7 C -0.135 4.135 8 C 0.134 3.866 9 H 0.093 0.907 10 N -0.735 5.735 11 C 0.117 3.883 12 C -0.138 4.138 13 C -0.085 4.085 14 C 0.076 3.924 15 C -0.324 4.324 16 H 0.127 0.873 17 C 0.058 3.942 18 N -0.721 5.721 19 Si 0.936 3.064 20 H -0.247 1.247 21 H -0.271 1.271 22 H -0.252 1.252 23 C -0.065 4.065 24 N 0.039 4.961 25 O -0.367 6.367 26 O -0.292 6.292 27 C -0.127 4.127 28 C 0.034 3.966 29 N -0.665 5.665 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.394 0.606 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.304 0.696 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -7.266 -14.313 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.302 3.698 4 O -0.367 6.367 5 C -0.020 4.020 6 H 0.119 0.881 7 C -0.174 4.174 8 C 0.025 3.975 9 H 0.110 0.890 10 N -0.369 5.369 11 C 0.016 3.984 12 C -0.159 4.159 13 C -0.105 4.105 14 C 0.071 3.929 15 C -0.353 4.353 16 H 0.145 0.855 17 C -0.173 4.173 18 N -0.343 5.343 19 Si 0.757 3.243 20 H -0.171 1.171 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.169 4.169 24 N 0.452 4.548 25 O -0.506 6.506 26 O -0.448 6.448 27 C -0.152 4.152 28 C -0.097 4.097 29 N -0.295 5.295 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.228 0.772 36 H 0.126 0.874 37 H 0.148 0.852 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.771 -6.890 -14.597 18.869 hybrid contribution 0.869 -0.301 0.598 1.097 sum -8.902 -7.192 -13.999 18.081 Atomic orbital electron populations 1.23234 0.76461 1.03543 1.02518 1.86502 1.23320 1.33826 1.84529 1.23783 0.91831 0.81284 0.72895 1.90662 1.66550 1.36316 1.43205 1.21509 0.88295 0.93319 0.98899 0.88125 1.22952 0.98487 1.01529 0.94445 1.22296 0.96923 0.93468 0.84818 0.88952 1.43399 1.09856 1.75532 1.08101 1.17016 0.85610 1.03673 0.92120 1.20416 0.93389 1.04408 0.97657 1.21036 0.95364 0.99207 0.94871 1.17251 0.92143 0.93062 0.90478 1.22106 0.88844 1.11074 1.13259 0.85518 1.27992 1.03955 0.93737 0.91634 1.69048 1.35424 1.13473 1.16324 0.85835 0.76620 0.80383 0.81441 1.17071 1.19510 1.17557 1.19362 0.97500 1.20963 0.79054 1.49616 1.01124 1.00454 1.03636 1.96052 1.33147 1.69698 1.51706 1.96021 1.03449 1.59588 1.85730 1.19305 0.96119 1.05393 0.94363 1.23526 0.96782 0.97251 0.92113 1.60898 1.44312 1.17227 1.07094 0.91990 0.88169 0.91968 0.88788 0.90041 0.77161 0.87446 0.85231 0.88301 0.86563 0.89647 0.90211 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.60 10.57 -39.27 -0.41 -4.01 16 3 C 0.46 5.27 7.09 36.01 0.26 5.52 16 4 O -0.48 -7.14 16.31 -18.76 -0.31 -7.44 16 5 C 0.09 0.84 3.87 -67.88 -0.26 0.58 16 6 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.13 -1.27 6.10 -24.91 -0.15 -1.42 16 8 C 0.13 1.49 3.11 -65.80 -0.20 1.28 16 9 H 0.09 1.00 6.29 -51.93 -0.33 0.68 16 10 N -0.74 -10.46 5.29 -49.96 -0.26 -10.72 16 11 C 0.12 2.15 6.67 -83.80 -0.56 1.59 16 12 C -0.14 -2.47 9.13 -39.72 -0.36 -2.83 16 13 C -0.08 -1.75 8.62 -39.11 -0.34 -2.08 16 14 C 0.08 1.83 5.52 -106.75 -0.59 1.24 16 15 C -0.32 -7.73 7.83 -35.74 -0.28 -8.01 16 16 H 0.13 3.19 5.87 -52.49 -0.31 2.88 16 17 C 0.06 1.20 5.42 -15.17 -0.08 1.11 16 18 N -0.72 -14.60 11.30 55.99 0.63 -13.97 16 19 Si 0.94 15.75 29.65 -169.99 -5.04 10.71 16 20 H -0.25 -4.41 7.11 56.52 0.40 -4.01 16 21 H -0.27 -4.22 7.11 56.52 0.40 -3.82 16 22 H -0.25 -4.14 7.11 56.52 0.40 -3.74 16 23 C -0.06 -1.65 6.89 -79.49 -0.55 -2.20 16 24 N 0.04 1.11 4.98 34.19 0.17 1.28 16 25 O -0.37 -10.78 19.14 -31.56 -0.60 -11.38 16 26 O -0.29 -8.51 16.26 -31.57 -0.51 -9.02 16 27 C -0.13 -2.81 9.35 -39.73 -0.37 -3.18 16 28 C 0.03 0.37 7.27 -2.30 -0.02 0.36 16 29 N -0.66 -6.63 6.60 -105.03 -0.69 -7.32 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 35 H 0.39 5.33 8.55 -40.82 -0.35 4.98 16 36 H 0.11 1.57 6.12 -52.48 -0.32 1.25 16 37 H 0.13 2.56 6.67 -52.49 -0.35 2.21 16 38 H 0.30 5.34 8.27 -40.82 -0.34 5.00 16 39 H 0.12 2.56 7.55 -52.49 -0.40 2.17 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.35 2.65 8.91 -39.30 -0.35 2.30 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -32.10 361.76 -8.92 -41.02 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -4.89 Total: 12.12 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.44 Total: -6.72 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: -0.16 Total: -30.73 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.84 Total: -31.86 kcal Atomic # 14 Polarization: 15.75 SS G_CDS: -5.04 Total: 10.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.10 -8.92 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164308307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.270 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds