Wall clock time and date at job start Tue Mar 31 2020 19:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00110 * 2 1 4 4 O 1.20834 * 119.99366 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00548 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.87543 * 41.02389 * 5 3 2 7 7 C 1.54322 * 109.88500 * 279.99896 * 5 3 2 8 8 C 1.55135 * 103.01804 * 218.14775 * 7 5 3 9 9 H 1.09003 * 110.99101 * 277.52577 * 8 7 5 10 10 N 1.46496 * 110.99261 * 153.74980 * 8 7 5 11 11 C 1.37655 * 120.00231 * 154.99874 * 10 8 7 12 12 C 1.40187 * 119.81317 * 359.97438 * 11 10 8 13 13 C 1.35798 * 120.19431 * 180.02562 * 12 11 10 14 14 C 1.41758 * 119.80186 * 359.97305 * 13 12 11 15 15 C 1.39511 * 120.18365 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99924 * 144.97567 * 15 14 13 17 17 C 1.46591 * 120.00290 * 324.97955 * 15 14 13 18 18 N 1.29498 * 119.99856 * 351.59220 * 17 15 14 19 19 Si 1.86802 * 120.00220 * 171.58911 * 17 15 14 20 20 H 1.48503 * 109.46967 * 60.00226 * 19 17 15 21 21 H 1.48505 * 109.46874 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47244 * 299.99962 * 19 17 15 23 23 C 1.41717 * 119.63329 * 0.02562 * 14 13 12 24 24 N 1.48011 * 120.10268 * 180.27736 * 23 14 13 25 25 O 1.31695 * 120.00637 * 173.55058 * 24 23 14 26 26 O 1.31706 * 119.99469 * 353.55539 * 24 23 14 27 27 C 1.35833 * 119.80275 * 0.02562 * 23 14 13 28 28 C 1.54905 * 101.65608 * 35.65052 * 8 7 5 29 29 N 1.47436 * 110.02667 * 162.14857 * 5 3 2 30 30 H 1.08993 * 109.46966 * 60.00095 * 1 2 3 31 31 H 1.09005 * 109.46623 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46876 * 299.99968 * 1 2 3 33 33 H 1.09000 * 110.70480 * 99.76561 * 7 5 3 34 34 H 1.08998 * 110.70665 * 336.52649 * 7 5 3 35 35 H 0.97001 * 119.99741 * 334.98952 * 10 8 7 36 36 H 1.08003 * 119.90008 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.10203 * 179.97438 * 13 12 11 38 38 H 0.96994 * 119.99978 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.90645 * 180.02562 * 27 23 14 40 40 H 1.09004 * 110.36751 * 81.75973 * 28 8 7 41 41 H 1.08999 * 110.37781 * 204.10188 * 28 8 7 42 42 H 1.00892 * 111.00090 * 240.76182 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5664 1.2750 -0.0006 6 1 3.9767 0.5222 -0.6738 7 6 4.1043 1.0506 1.4283 8 6 5.2904 2.0467 1.5156 9 1 6.1890 1.6243 1.0657 10 7 5.5395 2.4459 2.9030 11 6 6.7907 2.8779 3.2808 12 6 7.8238 2.9339 2.3350 13 6 9.0612 3.3584 2.6994 14 6 9.3063 3.7461 4.0407 15 6 10.5744 4.1840 4.4237 16 1 10.6757 4.9606 5.1674 17 6 11.7693 3.5901 3.8167 18 7 11.6583 2.5525 3.0498 19 14 13.4519 4.3300 4.1493 20 1 13.7316 4.2882 5.6072 21 1 14.4874 3.5513 3.4235 22 1 13.4744 5.7391 3.6812 23 6 8.2562 3.6864 4.9905 24 7 8.4990 4.0946 6.3923 25 8 7.4954 4.1601 7.2424 26 8 9.7189 4.3924 6.7895 27 6 7.0247 3.2584 4.6093 28 6 4.7596 3.2393 0.6817 29 7 4.0013 2.6183 -0.4251 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.4523 0.0251 1.5525 34 1 3.3425 1.2926 2.1694 35 1 4.8227 2.4058 3.5553 36 1 7.6353 2.6377 1.3136 37 1 9.8561 3.4005 1.9696 38 1 12.4489 2.1598 2.6479 39 1 6.2231 3.2127 5.3316 40 1 4.1032 3.8637 1.2879 41 1 5.5893 3.8278 0.2901 42 1 4.5604 2.5691 -1.2635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164308307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:48 Heat of formation + Delta-G solvation = -55.603660 kcal Electronic energy + Delta-G solvation = -28239.477692 eV Core-core repulsion = 23994.779707 eV Total energy + Delta-G solvation = -4244.697984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66512 -40.64730 -39.49677 -38.03624 -37.36073 -36.73155 -35.11747 -34.10564 -32.03470 -31.73085 -31.13479 -29.58140 -28.32273 -27.10623 -25.88584 -24.22819 -23.38881 -22.80306 -21.33104 -21.18234 -20.07718 -19.03582 -18.53178 -18.11754 -17.73863 -17.47855 -17.40347 -17.18910 -16.61441 -16.47614 -15.92442 -15.84089 -15.19096 -14.94846 -14.65971 -14.58983 -14.47654 -14.04267 -13.99083 -13.71410 -13.53658 -13.31727 -13.08458 -13.04034 -12.82065 -12.58436 -12.44362 -12.37522 -11.99013 -11.96786 -11.77083 -11.57680 -11.38825 -11.12135 -10.99406 -10.94022 -10.62239 -10.06530 -9.65075 -9.44108 -8.57807 -6.68770 -0.93062 0.76204 1.08191 1.19151 1.30729 1.46922 1.49974 1.62873 1.66896 2.08679 2.25724 2.50257 3.09362 3.25632 3.46774 3.71784 3.89752 4.01430 4.04599 4.11147 4.17279 4.31600 4.32400 4.35302 4.39741 4.52541 4.56850 4.70258 4.71282 4.83977 4.86331 4.99708 5.05988 5.21025 5.29364 5.38119 5.48934 5.59273 5.59628 5.79772 6.01519 6.05737 6.37164 6.40113 6.61135 6.81800 6.82813 7.18977 7.46684 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.002535 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.835344 B =11040.733971 C =12089.132645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.526 6.526 5 C 0.096 3.904 6 H 0.140 0.860 7 C -0.129 4.129 8 C 0.127 3.873 9 H 0.118 0.882 10 N -0.719 5.719 11 C 0.199 3.801 12 C -0.138 4.138 13 C -0.057 4.057 14 C 0.013 3.987 15 C -0.252 4.252 16 H 0.107 0.893 17 C 0.021 3.979 18 N -0.689 5.689 19 Si 0.999 3.001 20 H -0.273 1.273 21 H -0.229 1.229 22 H -0.241 1.241 23 C -0.030 4.030 24 N 0.017 4.983 25 O -0.503 6.503 26 O -0.423 6.423 27 C -0.214 4.214 28 C 0.040 3.960 29 N -0.676 5.676 30 H 0.060 0.940 31 H 0.132 0.868 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.334 0.666 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -10.170 -21.841 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.414 6.414 5 C -0.016 4.016 6 H 0.157 0.843 7 C -0.168 4.168 8 C 0.020 3.980 9 H 0.136 0.864 10 N -0.350 5.350 11 C 0.091 3.909 12 C -0.159 4.159 13 C -0.077 4.077 14 C 0.007 3.993 15 C -0.283 4.283 16 H 0.125 0.875 17 C -0.212 4.212 18 N -0.312 5.312 19 Si 0.815 3.185 20 H -0.198 1.198 21 H -0.151 1.151 22 H -0.164 1.164 23 C -0.145 4.145 24 N 0.378 4.622 25 O -0.607 6.607 26 O -0.542 6.542 27 C -0.241 4.241 28 C -0.091 4.091 29 N -0.308 5.308 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.475 -9.750 -21.810 25.033 hybrid contribution 0.316 0.241 1.788 1.831 sum -7.159 -9.509 -20.023 23.294 Atomic orbital electron populations 1.23487 0.75266 1.05547 1.02143 1.86498 1.24569 1.33033 1.83948 1.24372 0.92867 0.80999 0.71544 1.90654 1.67668 1.37714 1.45356 1.21638 0.86739 0.93845 0.99377 0.84280 1.22928 0.97249 1.02190 0.94418 1.22670 0.98808 0.94317 0.82220 0.86427 1.43806 1.08445 1.72473 1.10246 1.17275 0.86966 0.96327 0.90317 1.20891 0.91744 1.03387 0.99835 1.21289 0.97096 0.96440 0.92870 1.17788 0.92222 0.96752 0.92511 1.22863 0.90950 1.05958 1.08490 0.87480 1.28767 1.05818 0.94550 0.92064 1.68900 1.38532 1.11297 1.12446 0.84964 0.72509 0.80801 0.80199 1.19820 1.15126 1.16443 1.19982 0.98643 1.17303 0.78615 1.49375 1.00161 1.08282 1.04392 1.95900 1.33900 1.77255 1.53686 1.95839 1.04557 1.66772 1.87010 1.19202 0.95605 1.13024 0.96294 1.23344 0.96665 0.96854 0.92200 1.60731 1.44680 1.18028 1.07406 0.92112 0.85002 0.92699 0.86430 0.91354 0.76578 0.81744 0.82947 0.85136 0.88434 0.92412 0.88920 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.15 10.57 -51.45 -0.54 -6.69 16 3 C 0.46 9.27 7.09 71.24 0.50 9.77 16 4 O -0.53 -14.90 16.31 21.94 0.36 -14.54 16 5 C 0.10 1.31 3.87 44.51 0.17 1.48 16 6 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 7 C -0.13 -1.83 6.10 31.77 0.19 -1.63 16 8 C 0.13 2.14 3.11 46.37 0.14 2.28 16 9 H 0.12 1.55 6.29 -2.39 -0.02 1.54 16 10 N -0.72 -18.21 5.29 -311.99 -1.65 -19.86 16 11 C 0.20 6.82 6.67 39.17 0.26 7.08 16 12 C -0.14 -4.16 9.13 22.18 0.20 -3.96 16 13 C -0.06 -2.08 8.62 22.57 0.19 -1.88 16 14 C 0.01 0.61 5.52 -21.24 -0.12 0.50 16 15 C -0.25 -11.94 7.83 24.76 0.19 -11.75 16 16 H 0.11 5.70 5.87 -2.91 -0.02 5.68 16 17 C 0.02 0.78 5.42 87.22 0.47 1.25 16 18 N -0.69 -23.60 11.30 23.22 0.26 -23.34 16 19 Si 1.00 28.64 29.65 68.60 2.03 30.68 16 20 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 21 H -0.23 -5.23 7.11 99.48 0.71 -4.53 16 22 H -0.24 -6.63 7.11 99.48 0.71 -5.93 16 23 C -0.03 -1.64 6.89 36.68 0.25 -1.39 16 24 N 0.02 1.15 4.98 -45.75 -0.23 0.92 16 25 O -0.50 -35.47 19.14 3.52 0.07 -35.41 16 26 O -0.42 -28.64 16.26 3.51 0.06 -28.58 16 27 C -0.21 -10.09 9.35 22.18 0.21 -9.88 16 28 C 0.04 0.71 7.27 86.77 0.63 1.34 16 29 N -0.68 -10.50 6.60 -486.20 -3.21 -13.71 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.20 7.71 -2.39 -0.02 1.18 16 35 H 0.40 10.21 8.55 -92.71 -0.79 9.42 16 36 H 0.17 3.26 6.12 -2.91 -0.02 3.24 16 37 H 0.15 4.89 6.67 -2.91 -0.02 4.87 16 38 H 0.33 9.09 8.27 -92.71 -0.77 8.32 16 39 H 0.10 4.89 7.55 -2.91 -0.02 4.87 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.37 3.54 8.91 -89.70 -0.80 2.74 16 Total: -1.00 -86.81 361.76 1.17 -85.64 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.48 Total: 30.12 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 4.51 Total: -5.23 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -4.83 Total: -55.98 kcal Atomic # 8 Polarization: -85.16 SS G_CDS: -0.06 Total: -85.22 kcal Atomic # 14 Polarization: 28.64 SS G_CDS: 2.03 Total: 30.68 kcal Total: -86.81 1.17 -85.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164308307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.034 kcal (2) G-P(sol) polarization free energy of solvation -86.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds