Wall clock time and date at job start Tue Mar 31 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37132 * 124.99055 * 2 1 4 4 C 1.34288 * 109.80380 * 179.97438 * 3 2 1 5 5 C 1.46194 * 106.80659 * 0.02562 * 4 3 2 6 6 C 1.36770 * 124.98740 * 179.97438 * 2 1 3 7 7 N 1.33221 * 134.28070 * 0.02562 * 6 2 1 8 8 C 1.31675 * 120.70012 * 180.02562 * 7 6 2 9 9 Cl 1.73599 * 118.65909 * 179.97438 * 8 7 6 10 10 N 1.32190 * 122.67710 * 359.76988 * 8 7 6 11 11 C 1.32987 * 121.01920 * 0.48586 * 10 8 7 12 12 N 1.38315 * 120.82437 * 179.79462 * 11 10 8 13 13 C 1.46959 * 111.00076 * 359.71854 * 12 11 10 14 14 C 1.53058 * 109.36419 * 183.19079 * 13 12 11 15 15 N 1.46955 * 109.36051 * 301.59955 * 14 13 12 16 16 C 1.46906 * 110.99744 * 183.18754 * 15 14 13 17 17 C 1.50703 * 109.47109 * 169.99905 * 16 15 14 18 18 H 1.08005 * 119.99876 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99944 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47285 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47233 * 119.99722 * 21 19 17 24 24 H 1.48500 * 109.46790 * 239.99650 * 21 19 17 25 25 C 1.46959 * 110.88319 * 59.32174 * 15 14 13 26 26 C 1.46959 * 111.00095 * 123.52032 * 12 11 10 27 27 H 1.08996 * 109.46899 * 270.04682 * 1 2 3 28 28 H 1.08999 * 109.46849 * 30.04067 * 1 2 3 29 29 H 1.08999 * 109.47142 * 150.03834 * 1 2 3 30 30 H 1.08001 * 125.09637 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.59617 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.48972 * 63.22254 * 13 12 11 33 33 H 1.08998 * 109.48999 * 303.15654 * 13 12 11 34 34 H 1.08994 * 109.48935 * 181.63483 * 14 13 12 35 35 H 1.08999 * 109.48934 * 61.56553 * 14 13 12 36 36 H 1.08992 * 109.47459 * 289.99824 * 16 15 14 37 37 H 1.09004 * 109.47040 * 49.99975 * 16 15 14 38 38 H 0.96997 * 119.99752 * 180.02562 * 20 19 17 39 39 H 1.08995 * 109.48972 * 60.64434 * 25 15 14 40 40 H 1.08998 * 109.48999 * 180.71033 * 25 15 14 41 41 H 1.08999 * 109.48803 * 296.77630 * 26 12 11 42 42 H 1.09000 * 109.48812 * 56.82266 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2514 1.1234 0.0000 4 6 3.5474 0.7717 0.0006 5 6 3.5887 -0.6897 0.0003 6 6 2.2493 -1.1205 0.0005 7 7 2.0012 -2.4294 0.0007 8 6 2.9884 -3.3008 0.0017 9 17 2.6046 -4.9938 0.0025 10 7 4.2598 -2.9388 -0.0018 11 6 4.6069 -1.6551 0.0030 12 7 5.9385 -1.2809 0.0035 13 6 6.8167 -2.4592 0.0050 14 6 8.2759 -2.0046 0.0859 15 7 8.5771 -1.1282 -1.0547 16 6 9.9913 -0.7308 -1.0541 17 6 10.3207 -0.0439 -2.3545 18 1 9.5557 0.0849 -3.1060 19 6 11.5984 0.4201 -2.5847 20 7 12.5297 0.2637 -1.6694 21 14 12.0064 1.2721 -4.1962 22 1 10.7931 1.3220 -5.0509 23 1 12.4755 2.6539 -3.9207 24 1 13.0752 0.5172 -4.8984 25 6 7.6989 0.0501 -1.0562 26 6 6.2398 -0.4045 -1.1371 27 1 -0.3633 0.0008 1.0276 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3633 -0.8903 -0.5132 30 1 1.8836 2.1389 -0.0004 31 1 4.3960 1.4398 0.0011 32 1 6.6634 -3.0282 -0.9120 33 1 6.5828 -3.0860 0.8655 34 1 8.9303 -2.8757 0.0578 35 1 8.4358 -1.4590 1.0158 36 1 10.1764 -0.0475 -0.2253 37 1 10.6175 -1.6160 -0.9420 38 1 13.4285 0.5904 -1.8313 39 1 7.8522 0.6191 -0.1392 40 1 7.9327 0.6769 -1.9168 41 1 6.0799 -0.9501 -2.0671 42 1 5.5851 0.4665 -1.1093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:14 Heat of formation + Delta-G solvation = 113.258947 kcal Electronic energy + Delta-G solvation = -26390.283386 eV Core-core repulsion = 22625.909750 eV Total energy + Delta-G solvation = -3764.373636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.19398 -39.68239 -38.49801 -36.84773 -35.57844 -33.23118 -32.79002 -32.21276 -30.61468 -29.59767 -27.85625 -27.02040 -25.27804 -24.03216 -23.08608 -22.70487 -21.50931 -20.61839 -19.44967 -18.44574 -17.71239 -16.67230 -16.35228 -16.23349 -15.50478 -15.26648 -14.86591 -14.68435 -14.36487 -14.25102 -14.08678 -13.86514 -13.56978 -13.39210 -13.24919 -12.76827 -12.70162 -12.14292 -11.83794 -11.60876 -11.54825 -11.28129 -11.13863 -11.02905 -10.96423 -10.84777 -10.70229 -10.48944 -10.39033 -9.81446 -9.41843 -9.29354 -9.17546 -8.91506 -8.46218 -7.97748 -7.31033 -6.05073 -4.06790 0.57819 1.11061 1.24819 2.27605 2.33444 3.29371 3.32396 3.37227 3.41366 3.65382 4.05124 4.32323 4.40061 4.50189 4.52974 4.80740 4.82657 4.85406 4.98803 5.12665 5.22963 5.30857 5.34314 5.43227 5.56695 5.66060 5.70663 5.81440 5.95471 6.01434 6.14620 6.36690 6.46749 6.48425 6.54942 6.59296 6.70938 7.03507 7.10585 7.26226 7.30958 7.76154 7.90894 8.03631 8.14000 8.49556 9.00786 9.57767 11.05786 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002883 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.735594 B = 9709.309488 C =10895.154916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.463 5.463 3 C 0.043 3.957 4 C -0.152 4.152 5 C -0.224 4.224 6 C 0.341 3.659 7 N -0.546 5.546 8 C 0.413 3.587 9 Cl 0.019 6.981 10 N -0.565 5.565 11 C 0.436 3.564 12 N -0.464 5.464 13 C 0.069 3.931 14 C 0.052 3.948 15 N -0.539 5.539 16 C 0.194 3.806 17 C -0.508 4.508 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.066 3.934 26 C 0.061 3.939 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.032 0.968 36 H -0.007 1.007 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.034 0.966 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.413 -0.325 4.826 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.150 5.150 3 C -0.081 4.081 4 C -0.178 4.178 5 C -0.237 4.237 6 C 0.103 3.897 7 N -0.272 5.272 8 C 0.115 3.885 9 Cl 0.047 6.953 10 N -0.292 5.292 11 C 0.191 3.809 12 N -0.180 5.180 13 C -0.058 4.058 14 C -0.077 4.077 15 N -0.264 5.264 16 C 0.069 3.931 17 C -0.547 4.547 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.063 4.063 26 C -0.064 4.064 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.199 0.801 31 H 0.178 0.822 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.011 0.989 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.784 -1.276 4.833 25.283 hybrid contribution 0.419 1.115 -0.479 1.284 sum -24.365 -0.161 4.354 24.751 Atomic orbital electron populations 1.22041 0.76092 1.04663 1.03468 1.43623 1.06621 1.02870 1.61904 1.21973 0.90000 0.90600 1.05495 1.21675 0.96379 0.91671 1.08078 1.19961 0.92985 0.95816 1.14904 1.17770 0.87775 0.86209 0.97976 1.66487 1.37226 0.99500 1.23983 1.22023 0.84010 0.88433 0.93987 1.98418 1.93744 1.06932 1.96208 1.67955 1.18978 1.17903 1.24373 1.19474 0.90094 0.85879 0.85476 1.58904 0.99170 1.19318 1.40558 1.22226 0.91205 0.89404 1.02931 1.22180 0.93921 0.98211 0.93367 1.62327 1.07676 1.16707 1.39714 1.19719 0.81091 0.95589 0.96722 1.21181 0.95485 1.36479 1.01533 0.91819 1.24989 0.96318 0.96325 0.96951 1.69968 1.02798 1.46994 1.33935 0.86456 0.78422 0.79061 0.83563 1.19656 1.21117 1.21025 1.22051 0.88874 0.93386 1.01954 1.22624 0.99053 0.95711 0.88979 0.90919 0.89520 0.89392 0.80089 0.82190 0.91815 0.89670 0.90122 0.94937 0.98896 0.95011 0.92944 0.94772 0.88571 0.92508 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.07 59.85 0.66 1.12 16 2 N -0.46 -4.49 3.16 -123.64 -0.39 -4.88 16 3 C 0.04 0.35 11.30 -16.57 -0.19 0.16 16 4 C -0.15 -1.60 9.74 -37.78 -0.37 -1.97 16 5 C -0.22 -3.09 5.89 -105.00 -0.62 -3.71 16 6 C 0.34 4.56 7.94 -155.85 -1.24 3.32 16 7 N -0.55 -7.87 10.43 -10.96 -0.11 -7.99 16 8 C 0.41 6.13 8.15 -91.92 -0.75 5.38 16 9 Cl 0.02 0.24 29.25 -51.86 -1.52 -1.28 16 10 N -0.56 -8.92 8.85 -10.74 -0.10 -9.01 16 11 C 0.44 6.72 6.42 -154.74 -0.99 5.73 16 12 N -0.46 -7.24 4.73 -172.71 -0.82 -8.06 16 13 C 0.07 1.11 4.80 -3.76 -0.02 1.09 16 14 C 0.05 0.94 5.61 -3.76 -0.02 0.92 16 15 N -0.54 -11.28 4.70 -235.91 -1.11 -12.39 16 16 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 17 C -0.51 -13.85 8.47 -34.44 -0.29 -14.14 16 18 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.07 1.21 5.43 -3.77 -0.02 1.19 16 26 C 0.06 0.94 5.36 -3.77 -0.02 0.92 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.16 1.47 7.01 -52.49 -0.37 1.10 16 32 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 33 H 0.08 1.30 7.86 -51.93 -0.41 0.90 16 34 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H -0.01 -0.18 8.12 -51.93 -0.42 -0.61 16 37 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.85 6.79 -51.93 -0.35 1.50 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.14 5.16 -51.93 -0.27 0.87 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -32.05 357.08 -12.47 -44.52 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.54 Total: -3.27 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -3.99 Total: 6.33 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -1.79 Total: -67.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.52 Total: -1.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.05 -12.47 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.778 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds