Wall clock time and date at job start Tue Mar 31 2020 18:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37132 * 124.99055 * 2 1 4 4 C 1.34288 * 109.80380 * 179.97438 * 3 2 1 5 5 C 1.46194 * 106.80659 * 0.02562 * 4 3 2 6 6 C 1.36770 * 124.98740 * 179.97438 * 2 1 3 7 7 N 1.33221 * 134.28070 * 0.02562 * 6 2 1 8 8 C 1.31675 * 120.70012 * 180.02562 * 7 6 2 9 9 Cl 1.73599 * 118.65909 * 179.97438 * 8 7 6 10 10 N 1.32190 * 122.67710 * 359.76988 * 8 7 6 11 11 C 1.32987 * 121.01920 * 0.48586 * 10 8 7 12 12 N 1.38315 * 120.82437 * 179.79462 * 11 10 8 13 13 C 1.46959 * 111.00076 * 359.71854 * 12 11 10 14 14 C 1.53058 * 109.36419 * 183.19079 * 13 12 11 15 15 N 1.46955 * 109.36051 * 301.59955 * 14 13 12 16 16 C 1.46906 * 110.99744 * 183.18754 * 15 14 13 17 17 C 1.50703 * 109.47109 * 169.99905 * 16 15 14 18 18 H 1.08005 * 119.99876 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99944 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47285 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47233 * 119.99722 * 21 19 17 24 24 H 1.48500 * 109.46790 * 239.99650 * 21 19 17 25 25 C 1.46959 * 110.88319 * 59.32174 * 15 14 13 26 26 C 1.46959 * 111.00095 * 123.52032 * 12 11 10 27 27 H 1.08996 * 109.46899 * 270.04682 * 1 2 3 28 28 H 1.08999 * 109.46849 * 30.04067 * 1 2 3 29 29 H 1.08999 * 109.47142 * 150.03834 * 1 2 3 30 30 H 1.08001 * 125.09637 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.59617 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.48972 * 63.22254 * 13 12 11 33 33 H 1.08998 * 109.48999 * 303.15654 * 13 12 11 34 34 H 1.08994 * 109.48935 * 181.63483 * 14 13 12 35 35 H 1.08999 * 109.48934 * 61.56553 * 14 13 12 36 36 H 1.08992 * 109.47459 * 289.99824 * 16 15 14 37 37 H 1.09004 * 109.47040 * 49.99975 * 16 15 14 38 38 H 0.96997 * 119.99752 * 180.02562 * 20 19 17 39 39 H 1.08995 * 109.48972 * 60.64434 * 25 15 14 40 40 H 1.08998 * 109.48999 * 180.71033 * 25 15 14 41 41 H 1.08999 * 109.48803 * 296.77630 * 26 12 11 42 42 H 1.09000 * 109.48812 * 56.82266 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2514 1.1234 0.0000 4 6 3.5474 0.7717 0.0006 5 6 3.5887 -0.6897 0.0003 6 6 2.2493 -1.1205 0.0005 7 7 2.0012 -2.4294 0.0007 8 6 2.9884 -3.3008 0.0017 9 17 2.6046 -4.9938 0.0025 10 7 4.2598 -2.9388 -0.0018 11 6 4.6069 -1.6551 0.0030 12 7 5.9385 -1.2809 0.0035 13 6 6.8167 -2.4592 0.0050 14 6 8.2759 -2.0046 0.0859 15 7 8.5771 -1.1282 -1.0547 16 6 9.9913 -0.7308 -1.0541 17 6 10.3207 -0.0439 -2.3545 18 1 9.5557 0.0849 -3.1060 19 6 11.5984 0.4201 -2.5847 20 7 12.5297 0.2637 -1.6694 21 14 12.0064 1.2721 -4.1962 22 1 10.7931 1.3220 -5.0509 23 1 12.4755 2.6539 -3.9207 24 1 13.0752 0.5172 -4.8984 25 6 7.6989 0.0501 -1.0562 26 6 6.2398 -0.4045 -1.1371 27 1 -0.3633 0.0008 1.0276 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3633 -0.8903 -0.5132 30 1 1.8836 2.1389 -0.0004 31 1 4.3960 1.4398 0.0011 32 1 6.6634 -3.0282 -0.9120 33 1 6.5828 -3.0860 0.8655 34 1 8.9303 -2.8757 0.0578 35 1 8.4358 -1.4590 1.0158 36 1 10.1764 -0.0475 -0.2253 37 1 10.6175 -1.6160 -0.9420 38 1 13.4285 0.5904 -1.8313 39 1 7.8522 0.6191 -0.1392 40 1 7.9327 0.6769 -1.9168 41 1 6.0799 -0.9501 -2.0671 42 1 5.5851 0.4665 -1.1093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:13 Heat of formation + Delta-G solvation = 93.236301 kcal Electronic energy + Delta-G solvation = -26391.151634 eV Core-core repulsion = 22625.909750 eV Total energy + Delta-G solvation = -3765.241883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.12148 -40.80907 -39.65045 -37.91389 -37.00659 -34.80792 -33.79915 -33.59769 -31.98447 -30.75778 -29.38078 -27.85321 -26.83148 -25.21811 -24.29154 -23.94304 -23.20025 -21.51996 -20.85463 -19.40254 -18.75380 -18.42535 -17.61523 -17.14749 -16.79469 -16.49746 -16.19636 -15.93123 -15.82073 -15.60300 -15.24901 -15.16300 -14.76389 -14.63488 -14.16369 -13.96036 -13.48043 -13.39566 -13.24812 -13.10740 -12.76229 -12.70002 -12.54342 -12.42608 -12.36998 -12.21529 -12.18373 -12.01288 -11.88014 -11.61677 -11.19213 -10.60141 -10.50166 -10.32453 -9.84631 -9.06375 -8.89551 -8.18124 -6.28134 -0.42989 0.07783 0.24941 1.43630 1.44994 1.52190 1.57992 1.58748 2.19150 2.42656 2.59700 3.12273 3.14208 3.24481 3.39249 3.62294 3.76167 3.95683 4.03257 4.05598 4.25447 4.27499 4.32244 4.37926 4.44596 4.52010 4.65524 4.74331 4.79094 4.85480 4.94074 4.95860 5.05538 5.14419 5.23210 5.26581 5.41642 5.66017 5.73286 5.79411 5.88311 6.05495 6.21192 6.30463 6.58361 6.85680 6.87740 7.41744 8.93341 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002883 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.735594 B = 9709.309488 C =10895.154916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.458 5.458 3 C 0.079 3.921 4 C -0.182 4.182 5 C -0.232 4.232 6 C 0.314 3.686 7 N -0.546 5.546 8 C 0.391 3.609 9 Cl 0.030 6.970 10 N -0.581 5.581 11 C 0.414 3.586 12 N -0.467 5.467 13 C 0.084 3.916 14 C 0.056 3.944 15 N -0.547 5.547 16 C 0.210 3.790 17 C -0.521 4.521 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.282 1.282 25 C 0.070 3.930 26 C 0.076 3.924 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.234 0.766 31 H 0.172 0.828 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.029 0.971 36 H -0.034 1.034 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.131 1.842 4.101 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.144 5.144 3 C -0.045 4.045 4 C -0.206 4.206 5 C -0.245 4.245 6 C 0.075 3.925 7 N -0.272 5.272 8 C 0.093 3.907 9 Cl 0.058 6.942 10 N -0.309 5.309 11 C 0.170 3.830 12 N -0.183 5.183 13 C -0.043 4.043 14 C -0.073 4.073 15 N -0.272 5.272 16 C 0.083 3.917 17 C -0.559 4.559 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.208 1.208 25 C -0.059 4.059 26 C -0.049 4.049 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.096 0.904 30 H 0.250 0.750 31 H 0.189 0.811 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.047 0.953 36 H -0.016 1.016 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -27.564 0.880 4.115 27.884 hybrid contribution 1.095 0.480 -0.197 1.211 sum -26.470 1.360 3.918 26.793 Atomic orbital electron populations 1.22355 0.73644 1.06072 1.04718 1.44061 1.08140 1.02012 1.60211 1.22813 0.88942 0.91907 1.00852 1.21910 0.98199 0.90062 1.10474 1.20290 0.92745 0.97387 1.14081 1.18120 0.88682 0.86637 0.99080 1.66510 1.37052 1.00246 1.23385 1.22182 0.83954 0.89183 0.95338 1.98407 1.93619 1.05960 1.96229 1.67857 1.19724 1.18519 1.24757 1.19528 0.89987 0.86438 0.87085 1.58935 0.99590 1.18920 1.40860 1.21991 0.89856 0.89753 1.02700 1.22186 0.95471 0.97523 0.92123 1.62238 1.05689 1.18021 1.41291 1.19355 0.83498 0.93511 0.95287 1.21476 0.95805 1.36530 1.02073 0.91595 1.25906 0.96142 0.96969 1.00606 1.70097 1.03282 1.48073 1.36111 0.85335 0.78359 0.77892 0.79035 1.18486 1.20361 1.20804 1.22016 0.90270 0.92335 1.01241 1.22469 0.97142 0.96663 0.88655 0.89725 0.85827 0.90353 0.74986 0.81071 0.92907 0.88878 0.90220 0.95279 1.01629 0.97770 0.92727 0.95111 0.89600 0.93565 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.07 127.77 1.41 1.97 16 2 N -0.46 -7.26 3.16 -545.09 -1.72 -8.99 16 3 C 0.08 0.91 11.30 82.96 0.94 1.85 16 4 C -0.18 -3.27 9.74 23.43 0.23 -3.05 16 5 C -0.23 -6.08 5.89 -20.11 -0.12 -6.20 16 6 C 0.31 7.87 7.94 133.95 1.06 8.94 16 7 N -0.55 -15.39 10.43 -188.58 -1.97 -17.36 16 8 C 0.39 11.61 8.15 180.80 1.47 13.08 16 9 Cl 0.03 0.75 29.25 -2.72 -0.08 0.67 16 10 N -0.58 -18.52 8.85 -187.90 -1.66 -20.18 16 11 C 0.41 12.66 6.42 133.41 0.86 13.52 16 12 N -0.47 -14.55 4.73 -700.33 -3.32 -17.87 16 13 C 0.08 2.75 4.80 86.31 0.41 3.17 16 14 C 0.06 2.07 5.61 86.31 0.48 2.56 16 15 N -0.55 -23.66 4.70 -900.28 -4.23 -27.89 16 16 C 0.21 11.09 4.72 85.56 0.40 11.49 16 17 C -0.52 -28.92 8.47 25.60 0.22 -28.70 16 18 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 19 C 0.00 0.10 5.46 84.65 0.46 0.56 16 20 N -0.94 -55.85 13.29 21.45 0.28 -55.56 16 21 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.07 2.59 5.43 86.31 0.47 3.06 16 26 C 0.08 2.28 5.36 86.31 0.46 2.75 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.23 0.21 8.06 -2.91 -0.02 0.19 16 31 H 0.17 2.62 7.01 -2.91 -0.02 2.60 16 32 H 0.05 1.84 8.07 -2.39 -0.02 1.82 16 33 H 0.09 2.91 7.86 -2.39 -0.02 2.89 16 34 H 0.08 2.94 8.07 -2.39 -0.02 2.92 16 35 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 36 H -0.03 -1.95 8.12 -2.39 -0.02 -1.97 16 37 H 0.00 0.24 8.03 -2.38 -0.02 0.22 16 38 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 3.34 6.79 -2.39 -0.02 3.32 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.12 2.84 5.16 -2.39 -0.01 2.82 16 Total: -1.00 -72.03 357.08 -0.85 -72.88 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.04 Total: 3.76 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 8.77 Total: 24.99 kcal Atomic # 7 Polarization: -135.24 SS G_CDS: -12.62 Total: -147.85 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -72.03 -0.85 -72.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.118 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds