Wall clock time and date at job start Tue Mar 31 2020 19:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34690 * 117.00010 * 2 1 4 4 O 1.21432 * 119.99691 * 0.02562 * 3 2 1 5 5 C 1.48046 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.39178 * 119.68448 * 180.02562 * 5 3 2 7 7 C 1.38790 * 119.22205 * 180.02562 * 6 5 3 8 8 N 1.48012 * 120.70660 * 180.02562 * 7 6 5 9 9 O 1.21805 * 120.00163 * 179.97438 * 8 7 6 10 10 O 1.21799 * 120.00169 * 359.97438 * 8 7 6 11 11 C 1.38294 * 118.58489 * 0.02562 * 7 6 5 12 12 C 1.39474 * 119.29705 * 359.97438 * 11 7 6 13 13 N 1.38982 * 119.63265 * 179.97438 * 12 11 7 14 14 C 1.46499 * 120.00029 * 0.02562 * 13 12 11 15 15 H 1.09005 * 109.35317 * 324.81682 * 14 13 12 16 16 C 1.52959 * 109.41821 * 84.64356 * 14 13 12 17 17 C 1.53652 * 109.32660 * 183.83330 * 16 14 13 18 18 C 1.51269 * 108.31082 * 305.14051 * 17 16 14 19 19 C 1.37885 * 120.84892 * 231.38027 * 18 17 16 20 20 N 1.31516 * 119.99913 * 180.27944 * 19 18 17 21 21 Si 1.86798 * 119.99766 * 0.28022 * 19 18 17 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 18 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 18 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 18 25 25 C 1.51267 * 118.30147 * 51.65779 * 18 17 16 26 26 C 1.52964 * 109.41240 * 204.99704 * 14 13 12 27 27 N 1.32060 * 120.73235 * 0.25766 * 12 11 7 28 28 H 1.09003 * 109.47033 * 299.99969 * 1 2 3 29 29 H 1.08997 * 109.47144 * 59.99675 * 1 2 3 30 30 H 1.08994 * 109.46943 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.38703 * 359.97438 * 6 5 3 32 32 H 1.07997 * 120.34627 * 179.97438 * 11 7 6 33 33 H 0.97007 * 120.00139 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47998 * 303.68926 * 16 14 13 35 35 H 1.08999 * 109.47702 * 63.72290 * 16 14 13 36 36 H 1.09007 * 109.69461 * 185.52287 * 17 16 14 37 37 H 1.09007 * 109.78671 * 64.80813 * 17 16 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.63015 * 68.11448 * 25 18 17 40 40 H 1.09004 * 109.62839 * 188.49697 * 25 18 17 41 41 H 1.09002 * 109.47682 * 56.31342 * 26 14 13 42 42 H 1.08997 * 109.48097 * 296.27473 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4021 2.2185 0.0005 5 6 3.5419 1.2776 0.0006 6 6 4.1669 2.5212 0.0011 7 6 5.5534 2.5826 0.0011 8 7 6.2521 3.8874 0.0022 9 8 7.4696 3.9264 0.0027 10 8 5.6098 4.9223 0.0027 11 6 6.2683 1.3987 0.0000 12 6 5.5798 0.1858 -0.0005 13 7 6.2912 -1.0082 -0.0021 14 6 7.7560 -0.9880 -0.0027 15 1 8.1054 -0.1419 -0.5945 16 6 8.2633 -0.8480 1.4335 17 6 9.7952 -0.7305 1.4225 18 6 10.3578 -1.9202 0.6767 19 6 11.3479 -2.7009 1.2347 20 7 11.8288 -3.7282 0.5691 21 14 12.0062 -2.2993 2.9361 22 1 13.1550 -1.3662 2.8149 23 1 10.9348 -1.6632 3.7440 24 1 12.4521 -3.5496 3.6020 25 6 9.8108 -2.2279 -0.6997 26 6 8.2821 -2.2878 -0.6140 27 7 4.2594 0.1592 -0.0050 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.5798 3.4276 0.0007 32 1 7.3481 1.4134 -0.0004 33 1 5.8177 -1.8549 -0.0021 34 1 7.8344 0.0467 1.8848 35 1 7.9673 -1.7241 2.0105 36 1 10.1709 -0.7290 2.4458 37 1 10.0912 0.1902 0.9195 38 1 12.5257 -4.2771 0.9615 39 1 10.1080 -1.4433 -1.3956 40 1 10.1990 -3.1872 -1.0420 41 1 7.8665 -2.4134 -1.6139 42 1 7.9857 -3.1297 0.0115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:47 Heat of formation + Delta-G solvation = -60.480345 kcal Electronic energy + Delta-G solvation = -28679.981319 eV Core-core repulsion = 24435.071866 eV Total energy + Delta-G solvation = -4244.909453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.52934 -42.21087 -41.16855 -39.24777 -37.87519 -37.74091 -36.22918 -34.74724 -33.78886 -31.82092 -31.23998 -28.96546 -28.76455 -28.49580 -26.04837 -24.45088 -23.52253 -23.28290 -22.39764 -21.30602 -20.76138 -20.06068 -19.15953 -18.83462 -18.13977 -18.01755 -17.75737 -17.65229 -17.32723 -17.03483 -16.40959 -16.06611 -15.91517 -15.09851 -14.94682 -14.62192 -14.41460 -14.25169 -14.03941 -13.74766 -13.51861 -13.08758 -12.88115 -12.87512 -12.80080 -12.66699 -12.59250 -12.41960 -12.23411 -12.14587 -11.95846 -11.89134 -11.84913 -11.60558 -11.32187 -11.26792 -10.86431 -10.59743 -10.50698 -9.15042 -8.16168 -6.10046 -1.60362 -0.88849 -0.06953 0.08619 1.00973 1.26572 1.40166 1.44419 1.50078 1.68328 2.21294 2.41717 2.89278 3.06760 3.13780 3.15616 3.49457 3.73614 3.78220 3.92625 4.09893 4.24111 4.28330 4.34226 4.42347 4.52465 4.70953 4.72485 4.84896 4.94432 4.95786 5.03211 5.04594 5.06649 5.21060 5.26999 5.54780 5.59800 5.67895 5.76849 5.83577 6.10906 6.28798 6.33811 6.40402 6.60327 6.97614 7.48542 8.94208 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.003128 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.209285 B = 8950.171385 C =10348.442304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.534 3.466 4 O -0.501 6.501 5 C 0.156 3.844 6 C -0.122 4.122 7 C 0.039 3.961 8 N 0.025 4.975 9 O -0.159 6.159 10 O -0.137 6.137 11 C -0.142 4.142 12 C 0.422 3.578 13 N -0.688 5.688 14 C 0.166 3.834 15 H 0.083 0.917 16 C -0.114 4.114 17 C -0.024 4.024 18 C -0.497 4.497 19 C 0.025 3.975 20 N -0.930 5.930 21 Si 0.933 3.067 22 H -0.278 1.278 23 H -0.248 1.248 24 H -0.297 1.297 25 C 0.008 3.992 26 C -0.101 4.101 27 N -0.475 5.475 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.419 0.581 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.006 0.994 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.066 7.511 -0.946 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C 0.376 3.624 4 O -0.389 6.389 5 C 0.016 3.984 6 C -0.146 4.146 7 C -0.051 4.051 8 N 0.547 4.453 9 O -0.374 6.374 10 O -0.358 6.358 11 C -0.170 4.170 12 C 0.180 3.820 13 N -0.317 5.317 14 C 0.062 3.938 15 H 0.101 0.899 16 C -0.153 4.153 17 C -0.062 4.062 18 C -0.516 4.516 19 C -0.174 4.174 20 N -0.570 5.570 21 Si 0.760 3.240 22 H -0.204 1.204 23 H -0.173 1.173 24 H -0.224 1.224 25 C -0.030 4.030 26 C -0.140 4.140 27 N -0.197 5.197 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.200 0.800 32 H 0.193 0.807 33 H 0.257 0.743 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.730 6.172 -0.951 21.650 hybrid contribution 1.199 0.595 0.778 1.548 sum -19.531 6.767 -0.173 20.671 Atomic orbital electron populations 1.23755 0.73349 1.06299 1.03329 1.86673 1.25711 1.30343 1.82562 1.20315 0.86865 0.82344 0.72874 1.90889 1.65682 1.36560 1.45764 1.19552 0.91398 0.87559 0.99854 1.21469 0.91495 1.00710 1.00969 1.20865 0.92490 0.83332 1.08364 1.43565 1.01208 1.02684 0.97825 1.94624 0.95350 1.94022 1.53368 1.94549 1.67228 1.22138 1.51919 1.21765 1.04112 0.89416 1.01706 1.18041 0.86623 0.86920 0.90390 1.45055 1.06126 1.04570 1.75963 1.21055 0.75674 0.99987 0.97072 0.89892 1.22008 0.97346 1.00414 0.95578 1.19912 0.92838 0.96318 0.97112 1.20644 1.18401 1.10646 1.01895 1.25549 0.96605 0.94785 1.00458 1.69957 1.28959 1.18569 1.39537 0.85922 0.79110 0.77131 0.81787 1.20365 1.17281 1.22372 1.19303 0.91284 0.97269 0.95113 1.21685 0.97795 0.95347 0.99124 1.67225 1.05866 1.30803 1.15761 0.91050 0.91002 0.84850 0.79951 0.80731 0.74315 0.92767 0.92767 0.94661 0.95205 0.92917 0.97520 0.95139 0.92051 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.34 -6.45 10.38 -55.99 -0.58 -7.03 16 3 C 0.53 11.51 7.95 70.42 0.56 12.07 16 4 O -0.50 -11.89 16.10 20.05 0.32 -11.57 16 5 C 0.16 3.48 6.74 41.82 0.28 3.77 16 6 C -0.12 -2.64 9.14 22.63 0.21 -2.43 16 7 C 0.04 0.93 6.89 36.52 0.25 1.18 16 8 N 0.02 0.66 4.45 -46.12 -0.21 0.45 16 9 O -0.16 -4.63 18.53 18.88 0.35 -4.28 16 10 O -0.14 -3.66 18.54 18.89 0.35 -3.31 16 11 C -0.14 -3.40 8.31 22.58 0.19 -3.21 16 12 C 0.42 10.07 7.62 133.25 1.02 11.08 16 13 N -0.69 -16.46 5.24 -324.64 -1.70 -18.16 16 14 C 0.17 4.81 2.04 44.97 0.09 4.90 16 15 H 0.08 2.37 6.45 -2.38 -0.02 2.35 16 16 C -0.11 -3.73 5.41 30.80 0.17 -3.56 16 17 C -0.02 -0.95 5.62 30.25 0.17 -0.78 16 18 C -0.50 -23.59 5.50 -16.17 -0.09 -23.68 16 19 C 0.02 1.26 5.46 84.66 0.46 1.73 16 20 N -0.93 -51.92 12.73 21.45 0.27 -51.65 16 21 Si 0.93 40.91 27.52 68.60 1.89 42.80 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.25 -10.12 6.11 99.48 0.61 -9.51 16 24 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 25 C 0.01 0.37 5.97 30.11 0.18 0.55 16 26 C -0.10 -3.42 5.40 30.66 0.17 -3.25 16 27 N -0.48 -11.22 10.15 -182.42 -1.85 -13.07 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.18 3.58 7.27 -2.91 -0.02 3.56 16 32 H 0.18 4.22 5.72 -2.91 -0.02 4.20 16 33 H 0.42 9.09 8.72 -92.70 -0.81 8.28 16 34 H 0.05 1.57 7.65 -2.39 -0.02 1.55 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.03 1.43 4.60 -2.38 -0.01 1.42 16 37 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.03 1.54 7.07 -2.38 -0.02 1.52 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -58.12 357.54 3.88 -54.24 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.19 Total: 11.74 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 4.85 Total: -0.16 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -3.49 Total: -82.43 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.44 Total: -26.19 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.89 Total: 42.80 kcal Total: -58.12 3.88 -54.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.244 kcal (2) G-P(sol) polarization free energy of solvation -58.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds