Wall clock time and date at job start Tue Mar 31 2020 19:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34720 * 117.00382 * 2 1 4 4 O 1.21483 * 119.99917 * 359.97438 * 3 2 1 5 5 C 1.47609 * 120.00328 * 179.97438 * 3 2 1 6 6 C 1.40042 * 120.98116 * 354.33317 * 5 3 2 7 7 C 1.37906 * 119.08675 * 179.72987 * 6 5 3 8 8 N 1.48015 * 119.42923 * 180.27089 * 7 6 5 9 9 O 1.21803 * 120.00164 * 180.27611 * 8 7 6 10 10 O 1.21800 * 120.00295 * 0.28038 * 8 7 6 11 11 N 1.31946 * 121.13836 * 0.55816 * 7 6 5 12 12 C 1.31553 * 122.20101 * 359.71393 * 11 7 6 13 13 C 1.39221 * 120.76004 * 359.97438 * 12 11 7 14 14 N 1.38853 * 120.60738 * 180.02562 * 13 12 11 15 15 C 1.46494 * 120.00091 * 5.21945 * 14 13 12 16 16 H 1.09005 * 109.41284 * 324.85188 * 15 14 13 17 17 C 1.52959 * 109.41626 * 84.64348 * 15 14 13 18 18 C 1.53226 * 109.40357 * 183.70187 * 17 15 14 19 19 C 1.51269 * 108.54221 * 305.37233 * 18 17 15 20 20 C 1.37874 * 120.85231 * 231.32506 * 19 18 17 21 21 N 1.31517 * 120.00093 * 180.02562 * 20 19 18 22 22 Si 1.86802 * 119.99966 * 0.02585 * 20 19 18 23 23 H 1.48502 * 109.47218 * 89.99862 * 22 20 19 24 24 H 1.48504 * 109.46727 * 209.99448 * 22 20 19 25 25 H 1.48495 * 109.47244 * 329.99450 * 22 20 19 26 26 C 1.51278 * 118.29568 * 51.34723 * 19 18 17 27 27 C 1.52965 * 109.41414 * 205.00058 * 15 14 13 28 28 H 1.08995 * 109.47451 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46737 * 60.00021 * 1 2 3 30 30 H 1.09008 * 109.46865 * 300.00778 * 1 2 3 31 31 H 1.08000 * 120.45104 * 359.97438 * 6 5 3 32 32 H 1.08001 * 119.62052 * 179.97438 * 12 11 7 33 33 H 0.96996 * 119.99722 * 185.21374 * 14 13 12 34 34 H 1.08995 * 109.48456 * 303.68316 * 17 15 14 35 35 H 1.08998 * 109.47780 * 63.72526 * 17 15 14 36 36 H 1.09003 * 109.62539 * 185.65563 * 18 17 15 37 37 H 1.09001 * 109.78704 * 65.18493 * 18 17 15 38 38 H 0.96999 * 120.00327 * 180.02562 * 21 20 19 39 39 H 1.08992 * 109.62308 * 188.93859 * 26 19 18 40 40 H 1.08994 * 109.77965 * 68.46184 * 26 19 18 41 41 H 1.09003 * 109.47542 * 296.27595 * 27 15 14 42 42 H 1.08997 * 109.48472 * 56.29617 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4022 2.2192 -0.0005 5 6 3.5378 1.2776 0.0006 6 6 4.3202 0.1222 0.1197 7 6 5.6942 0.2390 0.1100 8 7 6.5285 -0.9778 0.2294 9 8 7.7430 -0.8862 0.2271 10 8 6.0005 -2.0708 0.3298 11 7 6.2781 1.4174 0.0019 12 6 5.5900 2.5333 -0.1071 13 6 4.1979 2.5137 -0.1132 14 7 3.4748 3.6935 -0.2289 15 6 4.1725 4.9605 -0.4607 16 1 5.1244 4.9524 0.0704 17 6 4.4293 5.1329 -1.9587 18 6 5.2398 6.4121 -2.1923 19 6 4.5088 7.5692 -1.5481 20 6 4.2394 8.7193 -2.2591 21 7 3.6032 9.7153 -1.6822 22 14 4.7782 8.8629 -4.0420 23 1 3.6980 8.3590 -4.9277 24 1 5.0569 10.2861 -4.3617 25 1 6.0079 8.0580 -4.2538 26 6 4.0813 7.4322 -0.1034 27 6 3.3128 6.1161 0.0545 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5140 0.8900 31 1 3.8538 -0.8474 0.2138 32 1 6.1110 3.4754 -0.1928 33 1 2.5077 3.6785 -0.1564 34 1 4.9881 4.2752 -2.3329 35 1 3.4774 5.2046 -2.4848 36 1 5.3391 6.5923 -3.2628 37 1 6.2286 6.3093 -1.7453 38 1 3.4133 10.5243 -2.1825 39 1 3.4362 8.2677 0.1682 40 1 4.9596 7.4230 0.5419 41 1 2.3873 6.1643 -0.5193 42 1 3.0799 5.9548 1.1070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:55 Heat of formation + Delta-G solvation = -50.211070 kcal Electronic energy + Delta-G solvation = -28980.029575 eV Core-core repulsion = 24735.565431 eV Total energy + Delta-G solvation = -4244.464144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21784 -41.35827 -40.10181 -38.17366 -36.98019 -36.50204 -35.10756 -33.34258 -32.25045 -30.75381 -29.93834 -28.37182 -27.55792 -26.19260 -25.29080 -23.47287 -22.12541 -21.89095 -21.54122 -19.93274 -19.67767 -18.77058 -17.89961 -17.77775 -17.57653 -16.94200 -16.83966 -16.58716 -16.23139 -15.43749 -14.94569 -14.78880 -14.58740 -14.00338 -13.74558 -13.64117 -13.55658 -13.16070 -12.71688 -12.53189 -12.39760 -12.04367 -11.64648 -11.56703 -11.34559 -11.29366 -11.26650 -11.24351 -11.08476 -10.95163 -10.83710 -10.54462 -10.41153 -10.24764 -10.12284 -9.76990 -9.25334 -8.98116 -8.66141 -8.12527 -6.29763 -4.23066 -0.16236 0.05870 1.19358 1.20362 2.04087 2.12690 2.91047 3.14486 3.15252 3.24163 3.24626 3.80663 4.04485 4.12766 4.17655 4.21594 4.71789 4.78231 4.81821 4.86728 4.96333 5.04937 5.16045 5.19171 5.37356 5.58935 5.68500 5.78784 6.10099 6.18629 6.29540 6.36124 6.36801 6.50136 6.70341 6.80223 6.89484 6.98932 7.11692 7.15133 7.38621 7.43503 7.48868 7.60460 7.79180 8.13948 8.74737 9.34079 10.79371 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.003312 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.764362 B = 8451.023420 C = 9920.075197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.530 3.470 4 O -0.505 6.505 5 C -0.202 4.202 6 C 0.024 3.976 7 C 0.060 3.940 8 N 0.046 4.954 9 O -0.136 6.136 10 O -0.177 6.177 11 N -0.367 5.367 12 C 0.063 3.937 13 C 0.280 3.720 14 N -0.663 5.663 15 C 0.132 3.868 16 H 0.084 0.916 17 C -0.120 4.120 18 C -0.013 4.013 19 C -0.498 4.498 20 C 0.080 3.920 21 N -0.885 5.885 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.266 1.266 26 C 0.014 3.986 27 C -0.114 4.114 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.171 0.829 32 H 0.192 0.808 33 H 0.423 0.577 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.023 0.977 38 H 0.267 0.733 39 H 0.064 0.936 40 H 0.009 0.991 41 H 0.060 0.940 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 -16.342 3.442 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.265 6.265 3 C 0.376 3.624 4 O -0.394 6.394 5 C -0.216 4.216 6 C 0.002 3.998 7 C -0.153 4.153 8 N 0.565 4.435 9 O -0.358 6.358 10 O -0.384 6.384 11 N -0.080 5.080 12 C -0.113 4.113 13 C 0.154 3.846 14 N -0.288 5.288 15 C 0.030 3.970 16 H 0.102 0.898 17 C -0.159 4.159 18 C -0.051 4.051 19 C -0.516 4.516 20 C -0.124 4.124 21 N -0.521 5.521 22 Si 0.716 3.284 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.191 1.191 26 C -0.023 4.023 27 C -0.152 4.152 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.189 0.811 32 H 0.209 0.791 33 H 0.270 0.730 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.027 0.973 41 H 0.078 0.922 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.537 -15.164 3.345 16.178 hybrid contribution -1.032 -0.152 -0.970 1.424 sum -5.570 -15.316 2.376 16.470 Atomic orbital electron populations 1.23388 0.74974 1.04233 1.03094 1.86531 1.24295 1.31584 1.84067 1.20459 0.87570 0.81895 0.72509 1.90623 1.66044 1.35487 1.47221 1.18501 0.90278 0.92179 1.20665 1.21635 0.90940 1.00417 0.86827 1.20724 0.87155 0.86716 1.20745 1.43150 1.01294 1.01447 0.97624 1.94562 0.95616 1.93324 1.52287 1.94523 1.76398 1.12692 1.54828 1.66045 1.41349 0.96729 1.03829 1.22633 0.88134 0.95991 1.04512 1.19292 0.93172 0.86661 0.85521 1.46740 1.12260 1.04508 1.65308 1.21688 0.96498 0.80679 0.98108 0.89767 1.22083 1.01342 0.99274 0.93220 1.19723 0.95376 0.92539 0.97453 1.19964 1.36391 0.98654 0.96625 1.24846 0.94226 0.95202 0.98140 1.69815 1.39528 1.05635 1.37150 0.86658 0.79586 0.77174 0.84967 1.20380 1.21440 1.19055 1.19338 0.95419 0.91981 0.95600 1.21957 0.99201 0.96211 0.97870 0.87528 0.91387 0.91416 0.81109 0.79121 0.73009 0.94285 0.92108 0.94562 0.95912 0.92319 0.91745 0.97286 0.92173 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.34 9.93 -40.55 -0.40 -3.74 16 3 C 0.53 6.12 7.90 34.55 0.27 6.40 16 4 O -0.50 -6.70 13.59 -19.25 -0.26 -6.96 16 5 C -0.20 -2.38 5.92 -104.51 -0.62 -3.00 16 6 C 0.02 0.28 9.17 -39.03 -0.36 -0.08 16 7 C 0.06 0.82 7.76 -146.24 -1.13 -0.32 16 8 N 0.05 0.70 4.45 32.83 0.15 0.84 16 9 O -0.14 -2.21 19.02 -29.46 -0.56 -2.77 16 10 O -0.18 -2.55 18.40 -29.46 -0.54 -3.10 16 11 N -0.37 -5.20 9.99 -10.16 -0.10 -5.30 16 12 C 0.06 0.79 10.37 -17.31 -0.18 0.61 16 13 C 0.28 3.53 6.66 -83.43 -0.56 2.97 16 14 N -0.66 -8.96 5.12 -51.89 -0.27 -9.23 16 15 C 0.13 2.03 2.15 -67.97 -0.15 1.89 16 16 H 0.08 1.21 6.30 -51.93 -0.33 0.88 16 17 C -0.12 -2.04 5.52 -26.64 -0.15 -2.19 16 18 C -0.01 -0.26 5.59 -27.49 -0.15 -0.41 16 19 C -0.50 -11.67 5.51 -98.92 -0.55 -12.21 16 20 C 0.08 2.00 5.46 -17.82 -0.10 1.91 16 21 N -0.88 -23.69 12.73 55.43 0.71 -22.98 16 22 Si 0.89 19.64 27.27 -169.99 -4.64 15.00 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -5.68 6.46 56.52 0.37 -5.31 16 26 C 0.01 0.32 5.97 -27.49 -0.16 0.15 16 27 C -0.11 -2.02 5.40 -26.63 -0.14 -2.17 16 28 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.17 1.60 7.25 -52.49 -0.38 1.22 16 32 H 0.19 2.17 6.16 -52.49 -0.32 1.85 16 33 H 0.42 5.92 5.29 -40.82 -0.22 5.71 16 34 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.75 4.78 -51.93 -0.25 0.50 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -27.40 353.53 -8.33 -35.73 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.84 Total: 2.34 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.90 Total: -5.15 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.48 Total: -36.67 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.77 Total: -16.57 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.64 Total: 15.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.40 -8.33 -35.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.486 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds