Wall clock time and date at job start Tue Mar 31 2020 19:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34720 * 117.00382 * 2 1 4 4 O 1.21483 * 119.99917 * 359.97438 * 3 2 1 5 5 C 1.47609 * 120.00328 * 179.97438 * 3 2 1 6 6 C 1.40042 * 120.98116 * 354.33317 * 5 3 2 7 7 C 1.37906 * 119.08675 * 179.72987 * 6 5 3 8 8 N 1.48015 * 119.42923 * 180.27089 * 7 6 5 9 9 O 1.21803 * 120.00164 * 180.27611 * 8 7 6 10 10 O 1.21800 * 120.00295 * 0.28038 * 8 7 6 11 11 N 1.31946 * 121.13836 * 0.55816 * 7 6 5 12 12 C 1.31553 * 122.20101 * 359.71393 * 11 7 6 13 13 C 1.39221 * 120.76004 * 359.97438 * 12 11 7 14 14 N 1.38853 * 120.60738 * 180.02562 * 13 12 11 15 15 C 1.46494 * 120.00091 * 5.21945 * 14 13 12 16 16 H 1.09005 * 109.41284 * 324.85188 * 15 14 13 17 17 C 1.52959 * 109.41626 * 84.64348 * 15 14 13 18 18 C 1.53226 * 109.40357 * 183.70187 * 17 15 14 19 19 C 1.51269 * 108.54221 * 305.37233 * 18 17 15 20 20 C 1.37874 * 120.85231 * 231.32506 * 19 18 17 21 21 N 1.31517 * 120.00093 * 180.02562 * 20 19 18 22 22 Si 1.86802 * 119.99966 * 0.02585 * 20 19 18 23 23 H 1.48502 * 109.47218 * 89.99862 * 22 20 19 24 24 H 1.48504 * 109.46727 * 209.99448 * 22 20 19 25 25 H 1.48495 * 109.47244 * 329.99450 * 22 20 19 26 26 C 1.51278 * 118.29568 * 51.34723 * 19 18 17 27 27 C 1.52965 * 109.41414 * 205.00058 * 15 14 13 28 28 H 1.08995 * 109.47451 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46737 * 60.00021 * 1 2 3 30 30 H 1.09008 * 109.46865 * 300.00778 * 1 2 3 31 31 H 1.08000 * 120.45104 * 359.97438 * 6 5 3 32 32 H 1.08001 * 119.62052 * 179.97438 * 12 11 7 33 33 H 0.96996 * 119.99722 * 185.21374 * 14 13 12 34 34 H 1.08995 * 109.48456 * 303.68316 * 17 15 14 35 35 H 1.08998 * 109.47780 * 63.72526 * 17 15 14 36 36 H 1.09003 * 109.62539 * 185.65563 * 18 17 15 37 37 H 1.09001 * 109.78704 * 65.18493 * 18 17 15 38 38 H 0.96999 * 120.00327 * 180.02562 * 21 20 19 39 39 H 1.08992 * 109.62308 * 188.93859 * 26 19 18 40 40 H 1.08994 * 109.77965 * 68.46184 * 26 19 18 41 41 H 1.09003 * 109.47542 * 296.27595 * 27 15 14 42 42 H 1.08997 * 109.48472 * 56.29617 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4022 2.2192 -0.0005 5 6 3.5378 1.2776 0.0006 6 6 4.3202 0.1222 0.1197 7 6 5.6942 0.2390 0.1100 8 7 6.5285 -0.9778 0.2294 9 8 7.7430 -0.8862 0.2271 10 8 6.0005 -2.0708 0.3298 11 7 6.2781 1.4174 0.0019 12 6 5.5900 2.5333 -0.1071 13 6 4.1979 2.5137 -0.1132 14 7 3.4748 3.6935 -0.2289 15 6 4.1725 4.9605 -0.4607 16 1 5.1244 4.9524 0.0704 17 6 4.4293 5.1329 -1.9587 18 6 5.2398 6.4121 -2.1923 19 6 4.5088 7.5692 -1.5481 20 6 4.2394 8.7193 -2.2591 21 7 3.6032 9.7153 -1.6822 22 14 4.7782 8.8629 -4.0420 23 1 3.6980 8.3590 -4.9277 24 1 5.0569 10.2861 -4.3617 25 1 6.0079 8.0580 -4.2538 26 6 4.0813 7.4322 -0.1034 27 6 3.3128 6.1161 0.0545 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5140 0.8900 31 1 3.8538 -0.8474 0.2138 32 1 6.1110 3.4754 -0.1928 33 1 2.5077 3.6785 -0.1564 34 1 4.9881 4.2752 -2.3329 35 1 3.4774 5.2046 -2.4848 36 1 5.3391 6.5923 -3.2628 37 1 6.2286 6.3093 -1.7453 38 1 3.4133 10.5243 -2.1825 39 1 3.4362 8.2677 0.1682 40 1 4.9596 7.4230 0.5419 41 1 2.3873 6.1643 -0.5193 42 1 3.0799 5.9548 1.1070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:54 Heat of formation + Delta-G solvation = -64.158205 kcal Electronic energy + Delta-G solvation = -28980.634368 eV Core-core repulsion = 24735.565431 eV Total energy + Delta-G solvation = -4245.068937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30592 -42.33519 -41.01899 -39.45187 -37.87398 -37.63416 -36.43346 -34.46054 -33.74967 -32.02330 -31.42881 -29.33219 -28.70326 -27.31334 -26.25251 -24.67095 -23.50114 -23.23457 -22.73139 -21.28780 -20.74332 -19.88346 -18.93908 -18.73161 -18.68773 -18.01586 -17.88805 -17.63281 -17.46197 -16.50024 -16.35809 -15.97434 -15.79268 -15.13411 -14.78960 -14.71225 -14.59637 -14.40979 -14.30354 -14.00527 -13.57664 -13.10058 -13.07564 -12.82035 -12.72763 -12.62322 -12.42829 -12.31372 -12.24760 -12.21404 -11.94827 -11.91768 -11.82834 -11.50646 -11.32007 -11.15780 -10.92935 -10.60639 -10.54884 -9.21889 -8.18557 -6.12528 -1.24756 -0.86563 0.12203 0.14542 1.13375 1.34412 1.37405 1.43127 1.49430 1.81283 2.17109 2.39690 2.84950 3.04721 3.12296 3.18826 3.26342 3.79178 3.85881 3.96902 4.01637 4.17181 4.26692 4.32793 4.36060 4.62648 4.67140 4.71228 4.81360 4.89742 4.93739 4.99119 5.04861 5.15654 5.23477 5.24499 5.56925 5.59026 5.68713 5.75801 5.81212 5.96026 6.20714 6.31024 6.43760 6.66409 6.95466 7.46301 8.92039 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.003312 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.764362 B = 8451.023420 C = 9920.075197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.532 3.468 4 O -0.524 6.524 5 C -0.196 4.196 6 C 0.042 3.958 7 C 0.049 3.951 8 N 0.046 4.954 9 O -0.185 6.185 10 O -0.153 6.153 11 N -0.388 5.388 12 C 0.068 3.932 13 C 0.282 3.718 14 N -0.663 5.663 15 C 0.145 3.855 16 H 0.102 0.898 17 C -0.114 4.114 18 C -0.017 4.017 19 C -0.499 4.499 20 C 0.024 3.976 21 N -0.930 5.930 22 Si 0.935 3.065 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.250 1.250 26 C 0.010 3.990 27 C -0.104 4.104 28 H 0.138 0.862 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.195 0.805 32 H 0.205 0.795 33 H 0.422 0.578 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.032 0.968 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.013 0.987 41 H 0.045 0.955 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 -19.067 3.352 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.379 3.621 4 O -0.414 6.414 5 C -0.210 4.210 6 C 0.020 3.980 7 C -0.164 4.164 8 N 0.562 4.438 9 O -0.395 6.395 10 O -0.368 6.368 11 N -0.100 5.100 12 C -0.107 4.107 13 C 0.157 3.843 14 N -0.288 5.288 15 C 0.042 3.958 16 H 0.120 0.880 17 C -0.153 4.153 18 C -0.056 4.056 19 C -0.518 4.518 20 C -0.175 4.175 21 N -0.570 5.570 22 Si 0.762 3.238 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.174 1.174 26 C -0.028 4.028 27 C -0.142 4.142 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.212 0.788 32 H 0.221 0.779 33 H 0.270 0.730 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.756 -17.902 3.249 18.806 hybrid contribution -1.066 0.564 -0.863 1.483 sum -5.822 -17.338 2.386 18.444 Atomic orbital electron populations 1.23715 0.73198 1.06390 1.03100 1.86529 1.25950 1.30269 1.83403 1.20403 0.87373 0.82238 0.72088 1.90623 1.66357 1.36261 1.48179 1.18558 0.90677 0.91885 1.19877 1.21779 0.89750 1.01288 0.85170 1.20812 0.87591 0.86207 1.21816 1.43362 1.01282 1.01921 0.97278 1.94576 0.96336 1.93589 1.54966 1.94487 1.76160 1.13172 1.53019 1.65993 1.42110 0.97252 1.04632 1.22804 0.88107 0.96001 1.03806 1.19327 0.93165 0.86534 0.85281 1.46411 1.12056 1.04085 1.66260 1.21364 0.96692 0.80658 0.97104 0.88031 1.21945 1.00491 0.98466 0.94393 1.19760 0.96074 0.92763 0.96954 1.20649 1.34741 0.99077 0.97346 1.25563 0.95103 0.95463 1.01337 1.69958 1.42320 1.06346 1.38382 0.85894 0.79747 0.76655 0.81493 1.20407 1.22420 1.17396 1.19287 0.95335 0.93087 0.95078 1.21706 0.98320 0.95162 0.99046 0.84352 0.91552 0.91301 0.78809 0.77888 0.73047 0.91684 0.93332 0.94998 0.94563 0.92914 0.95352 0.96868 0.93608 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.35 -5.49 9.93 -56.30 -0.56 -6.05 16 3 C 0.53 10.78 7.90 70.30 0.56 11.33 16 4 O -0.52 -12.70 13.59 19.89 0.27 -12.42 16 5 C -0.20 -4.01 5.92 -19.79 -0.12 -4.12 16 6 C 0.04 0.83 9.17 22.63 0.21 1.03 16 7 C 0.05 1.22 7.76 129.54 1.00 2.22 16 8 N 0.05 1.31 4.45 -50.04 -0.22 1.09 16 9 O -0.19 -5.95 19.02 18.88 0.36 -5.59 16 10 O -0.15 -4.03 18.40 18.89 0.35 -3.68 16 11 N -0.39 -10.14 9.99 -186.06 -1.86 -12.00 16 12 C 0.07 1.52 10.37 84.97 0.88 2.40 16 13 C 0.28 6.26 6.66 38.84 0.26 6.51 16 14 N -0.66 -16.11 5.12 -318.07 -1.63 -17.74 16 15 C 0.14 4.08 2.15 44.97 0.10 4.17 16 16 H 0.10 2.56 6.30 -2.38 -0.02 2.55 16 17 C -0.11 -3.58 5.52 30.66 0.17 -3.41 16 18 C -0.02 -0.67 5.59 30.10 0.17 -0.50 16 19 C -0.50 -23.30 5.51 -16.17 -0.09 -23.39 16 20 C 0.02 1.22 5.46 84.65 0.46 1.68 16 21 N -0.93 -51.71 12.73 21.45 0.27 -51.44 16 22 Si 0.94 40.55 27.27 68.60 1.87 42.42 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.25 -10.07 6.46 99.48 0.64 -9.42 16 26 C 0.01 0.44 5.97 30.11 0.18 0.62 16 27 C -0.10 -3.57 5.40 30.66 0.17 -3.41 16 28 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.19 2.85 7.25 -2.91 -0.02 2.83 16 32 H 0.20 3.93 6.16 -2.91 -0.02 3.91 16 33 H 0.42 10.86 5.29 -92.71 -0.49 10.36 16 34 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.03 1.24 4.78 -2.39 -0.01 1.23 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.26 14.02 8.31 -92.71 -0.77 13.24 16 39 H 0.03 1.42 7.07 -2.39 -0.02 1.41 16 40 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -60.37 353.53 4.53 -55.84 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.54 Total: 12.93 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.14 Total: -3.36 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.44 Total: -80.08 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: 0.42 Total: -27.74 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.87 Total: 42.42 kcal Total: -60.37 4.53 -55.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.319 kcal (2) G-P(sol) polarization free energy of solvation -60.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds