Wall clock time and date at job start Tue Mar 31 2020 19:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99898 * 2 1 4 4 O 1.20829 * 120.00161 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00125 * 180.02562 * 3 2 1 6 6 H 1.09007 * 110.36524 * 39.10424 * 5 3 2 7 7 C 1.54613 * 110.36565 * 276.60446 * 5 3 2 8 8 C 1.54263 * 104.95077 * 217.30999 * 7 5 3 9 9 H 1.08998 * 110.32385 * 119.02249 * 8 7 5 10 10 N 1.46496 * 110.32615 * 241.13137 * 8 7 5 11 11 C 1.37650 * 120.00123 * 203.57215 * 10 8 7 12 12 C 1.40189 * 119.81020 * 359.97438 * 11 10 8 13 13 C 1.35797 * 120.19017 * 180.02562 * 12 11 10 14 14 C 1.41752 * 119.80623 * 359.72783 * 13 12 11 15 15 C 1.39518 * 120.18971 * 180.29966 * 14 13 12 16 16 H 1.07995 * 120.00198 * 215.75866 * 15 14 13 17 17 C 1.46595 * 119.99893 * 35.75257 * 15 14 13 18 18 N 1.29489 * 119.99715 * 12.83416 * 17 15 14 19 19 Si 1.86794 * 120.00005 * 192.83480 * 17 15 14 20 20 H 1.48503 * 109.47298 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47095 * 120.00188 * 19 17 15 22 22 H 1.48503 * 109.47183 * 240.00207 * 19 17 15 23 23 C 1.41724 * 119.62750 * 0.52026 * 14 13 12 24 24 N 1.48016 * 120.09651 * 179.77427 * 23 14 13 25 25 O 1.31693 * 119.99777 * 185.87545 * 24 23 14 26 26 O 1.31706 * 119.99751 * 5.60010 * 24 23 14 27 27 C 1.35827 * 119.80345 * 359.50101 * 23 14 13 28 28 C 1.54381 * 105.14418 * 0.07710 * 8 7 5 29 29 N 1.48554 * 104.59824 * 23.80372 * 28 8 7 30 30 H 1.09002 * 109.47218 * 299.99434 * 1 2 3 31 31 H 1.08998 * 109.47213 * 59.99438 * 1 2 3 32 32 H 1.09003 * 109.46879 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.35531 * 98.46462 * 7 5 3 34 34 H 1.08995 * 110.40160 * 336.18203 * 7 5 3 35 35 H 0.96999 * 119.99843 * 23.57139 * 10 8 7 36 36 H 1.08000 * 119.90338 * 359.97438 * 12 11 10 37 37 H 1.08007 * 120.09975 * 179.97438 * 13 12 11 38 38 H 0.97003 * 120.00042 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.89917 * 180.24726 * 27 23 14 40 40 H 1.09003 * 110.40758 * 142.58434 * 28 8 7 41 41 H 1.08999 * 110.41626 * 264.90031 * 28 8 7 42 42 H 1.00904 * 111.00126 * 200.95815 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9863 0.5030 -0.6455 7 6 4.1129 1.1363 1.4390 8 6 5.3138 2.1025 1.5035 9 1 5.1439 2.8675 2.2611 10 7 6.5455 1.3645 1.7939 11 6 7.6172 2.0120 2.3659 12 6 7.5257 3.3779 2.6683 13 6 8.5783 4.0244 3.2321 14 6 9.7701 3.3129 3.5202 15 6 10.8542 3.9679 4.1051 16 1 11.8623 3.6964 3.8287 17 6 10.6250 5.0246 5.0950 18 7 9.4482 5.1839 5.6112 19 14 12.0305 6.1413 5.6115 20 1 13.2638 5.7555 4.8798 21 1 11.6863 7.5501 5.2922 22 1 12.2586 6.0064 7.0727 23 6 9.8558 1.9336 3.2062 24 7 11.0969 1.1817 3.4979 25 8 11.2180 -0.0684 3.1017 26 8 12.0823 1.7646 4.1490 27 6 8.7936 1.3023 2.6421 28 6 5.3910 2.7440 0.1014 29 7 4.0144 2.6204 -0.4432 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.4400 0.1131 1.6235 34 1 3.3529 1.4282 2.1638 35 1 6.6059 0.4196 1.5832 36 1 6.6157 3.9176 2.4514 37 1 8.5064 5.0768 3.4641 38 1 9.2965 5.8829 6.2665 39 1 8.8558 0.2503 2.4059 40 1 5.6765 3.7931 0.1787 41 1 6.0999 2.2033 -0.5257 42 1 4.0165 2.6877 -1.4500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169132092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:55 Heat of formation + Delta-G solvation = -53.531472 kcal Electronic energy + Delta-G solvation = -28199.015598 eV Core-core repulsion = 23954.407471 eV Total energy + Delta-G solvation = -4244.608127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68749 -40.66431 -39.48657 -38.01841 -37.41515 -36.69283 -35.10611 -34.09854 -32.03836 -31.79427 -31.12156 -29.64679 -28.32631 -27.09376 -25.88578 -24.28141 -23.31592 -22.69372 -21.46054 -21.12050 -20.06016 -18.94638 -18.58117 -18.26221 -17.89095 -17.57338 -17.41584 -17.10077 -16.70338 -16.13605 -15.82916 -15.72420 -15.17093 -14.99538 -14.66356 -14.60246 -14.29657 -14.19370 -13.99556 -13.78802 -13.69580 -13.21780 -13.15505 -13.02707 -12.87157 -12.77087 -12.55768 -12.28342 -11.97573 -11.81556 -11.78504 -11.53959 -11.46136 -11.11445 -10.97399 -10.91832 -10.58125 -10.05566 -9.73769 -9.45619 -8.58604 -6.66856 -0.91722 0.76493 1.08805 1.11159 1.30981 1.46292 1.52461 1.60196 1.63360 2.09626 2.23360 2.55007 3.10737 3.30054 3.42093 3.57483 3.86541 4.00405 4.06830 4.13366 4.24235 4.30875 4.33284 4.34209 4.38526 4.53411 4.65498 4.71011 4.72019 4.80642 4.85038 5.01146 5.04734 5.11709 5.30901 5.32224 5.43509 5.53217 5.60911 5.79156 6.02747 6.06792 6.15545 6.38228 6.61829 6.75754 6.90012 7.19934 7.47584 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.002527 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.137647 B =11076.967464 C =12157.041371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.469 3.531 4 O -0.518 6.518 5 C 0.077 3.923 6 H 0.109 0.891 7 C -0.111 4.111 8 C 0.151 3.849 9 H 0.097 0.903 10 N -0.719 5.719 11 C 0.196 3.804 12 C -0.138 4.138 13 C -0.061 4.061 14 C 0.016 3.984 15 C -0.255 4.255 16 H 0.109 0.891 17 C 0.020 3.980 18 N -0.692 5.692 19 Si 1.000 3.000 20 H -0.264 1.264 21 H -0.225 1.225 22 H -0.254 1.254 23 C -0.031 4.031 24 N 0.018 4.982 25 O -0.497 6.497 26 O -0.422 6.422 27 C -0.207 4.207 28 C 0.028 3.972 29 N -0.652 5.652 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.404 0.596 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.332 0.668 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.283 4.527 -7.904 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.311 3.689 4 O -0.405 6.405 5 C -0.034 4.034 6 H 0.126 0.874 7 C -0.150 4.150 8 C 0.045 3.955 9 H 0.115 0.885 10 N -0.352 5.352 11 C 0.089 3.911 12 C -0.158 4.158 13 C -0.081 4.081 14 C 0.010 3.990 15 C -0.285 4.285 16 H 0.126 0.874 17 C -0.213 4.213 18 N -0.314 5.314 19 Si 0.816 3.184 20 H -0.188 1.188 21 H -0.148 1.148 22 H -0.178 1.178 23 C -0.147 4.147 24 N 0.380 4.620 25 O -0.603 6.603 26 O -0.541 6.541 27 C -0.234 4.234 28 C -0.102 4.102 29 N -0.284 5.284 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.240 0.760 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.104 5.187 -7.302 22.926 hybrid contribution 1.454 -1.374 -0.317 2.026 sum -19.650 3.812 -7.619 21.417 Atomic orbital electron populations 1.23533 0.74804 1.05650 1.02478 1.86503 1.24939 1.32855 1.83810 1.23771 0.92038 0.81204 0.71916 1.90668 1.67415 1.37342 1.45109 1.22115 0.87021 0.94369 0.99930 0.87351 1.22532 0.97048 1.01723 0.93671 1.21599 0.82787 0.94263 0.96850 0.88525 1.44041 1.11441 1.11808 1.67927 1.17218 0.86678 0.91531 0.95677 1.20872 0.99794 0.92371 1.02802 1.21191 0.90764 1.00010 0.96138 1.17754 0.95795 0.88559 0.96892 1.22876 0.97101 1.03282 1.05285 0.87364 1.28803 1.00952 0.97041 0.94481 1.68933 1.24604 1.23795 1.14096 0.84861 0.76375 0.77486 0.79662 1.18787 1.14766 1.17757 1.19953 0.84955 0.91683 1.18077 1.49373 1.04308 1.01915 1.06410 1.95896 1.92468 1.01495 1.70447 1.95848 1.34885 1.72597 1.50810 1.19198 0.92904 0.99439 1.11868 1.23491 0.88531 1.02777 0.95400 1.63281 1.21465 1.26124 1.17522 0.92114 0.91932 0.85136 0.87530 0.89715 0.76024 0.82492 0.83633 0.85268 0.87837 0.88561 0.92385 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.37 -5.97 10.57 -51.41 -0.54 -6.51 16 3 C 0.47 8.96 7.13 71.24 0.51 9.47 16 4 O -0.52 -13.30 16.34 21.96 0.36 -12.94 16 5 C 0.08 1.16 3.69 44.40 0.16 1.33 16 6 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 7 C -0.11 -1.70 6.31 31.57 0.20 -1.50 16 8 C 0.15 2.78 3.02 45.89 0.14 2.92 16 9 H 0.10 1.85 6.43 -2.39 -0.02 1.84 16 10 N -0.72 -17.26 5.17 -314.28 -1.63 -18.88 16 11 C 0.20 6.68 6.67 39.17 0.26 6.94 16 12 C -0.14 -4.37 9.12 22.18 0.20 -4.17 16 13 C -0.06 -2.30 8.64 22.57 0.19 -2.10 16 14 C 0.02 0.75 5.49 -21.24 -0.12 0.63 16 15 C -0.25 -12.19 7.80 24.76 0.19 -12.00 16 16 H 0.11 5.80 5.91 -2.91 -0.02 5.78 16 17 C 0.02 0.76 5.33 87.22 0.46 1.23 16 18 N -0.69 -24.95 11.60 23.22 0.27 -24.68 16 19 Si 1.00 29.09 29.66 68.60 2.03 31.13 16 20 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 21 H -0.23 -5.35 7.11 99.48 0.71 -4.64 16 22 H -0.25 -7.19 7.11 99.48 0.71 -6.48 16 23 C -0.03 -1.71 6.89 36.68 0.25 -1.46 16 24 N 0.02 1.20 4.98 -45.75 -0.23 0.97 16 25 O -0.50 -34.39 19.14 3.53 0.07 -34.32 16 26 O -0.42 -28.39 16.26 3.50 0.06 -28.33 16 27 C -0.21 -9.51 9.35 22.17 0.21 -9.30 16 28 C 0.03 0.47 7.18 86.45 0.62 1.09 16 29 N -0.65 -10.73 6.88 -482.38 -3.32 -14.05 16 30 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.11 1.35 7.65 -2.39 -0.02 1.33 16 34 H 0.08 1.37 7.86 -2.39 -0.02 1.35 16 35 H 0.40 8.85 8.31 -92.71 -0.77 8.08 16 36 H 0.16 3.69 6.19 -2.91 -0.02 3.67 16 37 H 0.15 4.92 6.89 -2.91 -0.02 4.90 16 38 H 0.33 9.62 8.27 -92.71 -0.77 8.85 16 39 H 0.10 4.95 7.55 -2.91 -0.02 4.93 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 0.98 8.06 -2.39 -0.02 0.96 16 42 H 0.35 4.79 8.92 -89.69 -0.80 3.99 16 Total: -1.00 -82.68 361.82 1.10 -81.59 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.46 Total: 31.44 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 4.49 Total: -5.40 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -4.90 Total: -56.65 kcal Atomic # 8 Polarization: -82.04 SS G_CDS: -0.06 Total: -82.10 kcal Atomic # 14 Polarization: 29.09 SS G_CDS: 2.03 Total: 31.13 kcal Total: -82.68 1.10 -81.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169132092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.056 kcal (2) G-P(sol) polarization free energy of solvation -82.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds