Wall clock time and date at job start Tue Mar 31 2020 19:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34225 * 116.99924 * 2 1 4 4 O 1.20826 * 120.00361 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99939 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.36448 * 39.10866 * 5 3 2 7 7 C 1.54606 * 110.46382 * 276.66136 * 5 3 2 8 8 C 1.54260 * 104.94757 * 217.26447 * 7 5 3 9 9 H 1.08997 * 110.32418 * 119.02863 * 8 7 5 10 10 N 1.46502 * 110.32192 * 241.13040 * 8 7 5 11 11 C 1.39665 * 120.00155 * 203.57266 * 10 8 7 12 12 C 1.38170 * 119.99196 * 353.65028 * 11 10 8 13 13 C 1.41128 * 119.50898 * 180.02562 * 12 11 10 14 14 C 1.40362 * 120.25272 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99916 * 330.08529 * 14 13 12 16 16 C 1.46522 * 120.00221 * 150.09321 * 14 13 12 17 17 N 1.29513 * 120.00126 * 168.36792 * 16 14 13 18 18 Si 1.86793 * 119.99859 * 348.36794 * 16 14 13 19 19 H 1.48497 * 109.47575 * 92.70628 * 18 16 14 20 20 H 1.48506 * 109.47327 * 212.70693 * 18 16 14 21 21 H 1.48500 * 109.47579 * 332.70396 * 18 16 14 22 22 C 1.41331 * 119.49405 * 359.97438 * 13 12 11 23 23 C 1.36491 * 119.96516 * 359.97438 * 22 13 12 24 24 C 1.38666 * 120.49800 * 359.72916 * 23 22 13 25 25 N 1.48017 * 119.74250 * 180.29230 * 24 23 22 26 26 O 1.31702 * 119.99785 * 5.97656 * 25 24 23 27 27 O 1.31693 * 119.99986 * 185.97729 * 25 24 23 28 28 C 1.54378 * 105.14954 * 0.07333 * 8 7 5 29 29 N 1.48554 * 110.41009 * 161.45421 * 5 3 2 30 30 H 1.08990 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46450 * 299.99605 * 1 2 3 32 32 H 1.08997 * 109.47063 * 59.99636 * 1 2 3 33 33 H 1.08999 * 110.35604 * 98.41455 * 7 5 3 34 34 H 1.09002 * 110.40400 * 336.13510 * 7 5 3 35 35 H 0.97008 * 120.00238 * 23.57338 * 10 8 7 36 36 H 1.08006 * 120.24269 * 0.02562 * 12 11 10 37 37 H 0.97001 * 120.00447 * 180.02562 * 17 16 14 38 38 H 1.08007 * 120.01889 * 179.97438 * 22 13 12 39 39 H 1.07998 * 119.74861 * 179.97438 * 23 22 13 40 40 H 1.08995 * 110.40926 * 142.58039 * 28 8 7 41 41 H 1.09004 * 110.41576 * 264.90765 * 28 8 7 42 42 H 1.00904 * 111.00131 * 38.82709 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5665 1.2748 -0.0006 6 1 3.9865 0.5030 -0.6455 7 6 4.1156 1.1350 1.4379 8 6 5.3171 2.1004 1.5007 9 1 5.1492 2.8651 2.2591 10 7 6.5490 1.3615 1.7884 11 6 7.6378 2.0175 2.3671 12 6 7.6028 3.3869 2.5476 13 6 8.7089 4.0394 3.1329 14 6 8.6903 5.4299 3.3231 15 1 8.1293 6.0598 2.6485 16 6 9.4320 6.0271 4.4367 17 7 9.6041 7.3098 4.4864 18 14 10.1294 4.9383 5.7849 19 1 11.5290 4.5714 5.4505 20 1 10.1051 5.6719 7.0759 21 1 9.3088 3.7061 5.9003 22 6 9.8355 3.2819 3.5261 23 6 9.8471 1.9300 3.3388 24 6 8.7574 1.2890 2.7693 25 7 8.7853 -0.1787 2.5799 26 8 9.7890 -0.8853 3.0572 27 8 7.8064 -0.7781 1.9342 28 6 5.3923 2.7428 0.0989 29 7 4.0145 2.6202 -0.4433 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.4424 0.1115 1.6212 34 1 3.3571 1.4269 2.1643 35 1 6.6085 0.4166 1.5770 36 1 6.7354 3.9538 2.2431 37 1 10.0955 7.7051 5.2234 38 1 10.6868 3.7726 3.9744 39 1 10.7100 1.3547 3.6402 40 1 5.6784 3.7916 0.1762 41 1 6.0997 2.2019 -0.5298 42 1 3.4144 3.3415 -0.0722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169136624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:59 Heat of formation + Delta-G solvation = -52.969306 kcal Electronic energy + Delta-G solvation = -28766.638412 eV Core-core repulsion = 24522.054662 eV Total energy + Delta-G solvation = -4244.583750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.90477 -40.90425 -39.57216 -38.64494 -37.59710 -36.38957 -35.59244 -34.62376 -32.92955 -31.32617 -31.01235 -28.93057 -28.68459 -28.22972 -25.31803 -24.43922 -23.47408 -22.93402 -21.86273 -21.23434 -20.05716 -19.34898 -18.97568 -18.60597 -18.21244 -17.54639 -17.47068 -17.02953 -16.96608 -16.49368 -15.89421 -15.68808 -15.38217 -15.06799 -15.03677 -14.88484 -14.53484 -14.44896 -14.09432 -13.96089 -13.55025 -13.35903 -13.09021 -13.01660 -12.80994 -12.79576 -12.63607 -12.27034 -12.07434 -11.86989 -11.83339 -11.73285 -11.59680 -11.53391 -11.39834 -11.32690 -11.02902 -10.12988 -9.98756 -9.43131 -8.61270 -6.94796 -1.17519 0.61912 0.86527 0.94178 0.95707 1.24720 1.39154 1.45254 1.54218 1.98570 2.19647 2.40501 3.07245 3.10940 3.36107 3.62987 3.72923 3.84294 4.02608 4.06112 4.13046 4.25077 4.26975 4.31094 4.32072 4.40752 4.48843 4.61218 4.68307 4.72609 4.79050 4.90548 4.98110 5.02642 5.20626 5.23695 5.32325 5.44902 5.52088 5.62325 5.75759 6.10789 6.14197 6.21801 6.39914 6.49264 6.56323 6.91614 7.51350 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.003295 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.883260 B = 8495.163675 C =10140.714317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.475 3.525 4 O -0.525 6.525 5 C 0.081 3.919 6 H 0.134 0.866 7 C -0.143 4.143 8 C 0.115 3.885 9 H 0.096 0.904 10 N -0.719 5.719 11 C 0.291 3.709 12 C -0.296 4.296 13 C 0.092 3.908 14 C -0.332 4.332 15 H 0.105 0.895 16 C 0.049 3.951 17 N -0.732 5.732 18 Si 0.955 3.045 19 H -0.242 1.242 20 H -0.262 1.262 21 H -0.249 1.249 22 C -0.208 4.208 23 C -0.029 4.029 24 C -0.147 4.147 25 N 0.056 4.944 26 O -0.373 6.373 27 O -0.357 6.357 28 C 0.035 3.965 29 N -0.647 5.647 30 H 0.132 0.868 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.410 0.590 36 H 0.139 0.861 37 H 0.324 0.676 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 -0.085 -2.136 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.413 6.413 5 C -0.030 4.030 6 H 0.151 0.849 7 C -0.182 4.182 8 C 0.007 3.993 9 H 0.114 0.886 10 N -0.364 5.364 11 C 0.181 3.819 12 C -0.324 4.324 13 C 0.086 3.914 14 C -0.357 4.357 15 H 0.123 0.877 16 C -0.185 4.185 17 N -0.350 5.350 18 Si 0.776 3.224 19 H -0.167 1.167 20 H -0.187 1.187 21 H -0.172 1.172 22 C -0.230 4.230 23 C -0.049 4.049 24 C -0.258 4.258 25 N 0.457 4.543 26 O -0.513 6.513 27 O -0.493 6.493 28 C -0.096 4.096 29 N -0.278 5.278 30 H 0.150 0.850 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.261 0.739 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.258 0.331 -2.849 11.617 hybrid contribution 0.150 -0.807 1.284 1.524 sum -11.107 -0.476 -1.565 11.227 Atomic orbital electron populations 1.23604 0.74338 1.05891 1.02743 1.86514 1.25336 1.32315 1.83369 1.23586 0.91762 0.81558 0.71318 1.90652 1.67331 1.37077 1.46274 1.22397 0.86740 0.96367 0.97491 0.84865 1.23030 0.97330 1.02024 0.95852 1.22442 0.83595 0.94536 0.98707 0.88598 1.46250 1.11197 1.14297 1.64623 1.17331 0.84727 0.91760 0.88123 1.20392 1.01457 0.89521 1.21010 1.17732 0.90486 0.92882 0.90268 1.21614 1.16928 0.91271 1.05915 0.87703 1.28503 0.92560 0.96394 1.01000 1.68890 1.21886 1.13919 1.30341 0.85617 0.80890 0.79541 0.76304 1.16683 1.18723 1.17234 1.21062 1.00062 0.92455 1.09431 1.20077 0.95623 0.94718 0.94509 1.19997 1.02966 0.75037 1.27808 1.49968 1.00488 1.04742 0.99088 1.96094 1.27396 1.66866 1.60978 1.95626 1.29936 1.74173 1.49596 1.23550 0.90459 1.02689 0.92856 1.63433 1.03919 1.02121 1.58332 0.85008 0.91736 0.91663 0.88726 0.89169 0.73858 0.84306 0.86176 0.85208 0.85111 0.88511 0.90002 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.18 10.57 -51.37 -0.54 -7.73 16 3 C 0.47 10.76 7.14 71.24 0.51 11.27 16 4 O -0.52 -14.06 15.63 21.96 0.34 -13.72 16 5 C 0.08 1.75 3.76 44.40 0.17 1.92 16 6 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 7 C -0.14 -3.19 6.32 31.57 0.20 -2.99 16 8 C 0.11 2.99 2.96 45.89 0.14 3.13 16 9 H 0.10 2.46 6.79 -2.39 -0.02 2.44 16 10 N -0.72 -24.58 5.13 -314.87 -1.62 -26.20 16 11 C 0.29 11.42 6.63 38.18 0.25 11.68 16 12 C -0.30 -10.91 8.92 22.96 0.20 -10.71 16 13 C 0.09 3.53 5.24 -21.29 -0.11 3.42 16 14 C -0.33 -12.68 9.87 24.95 0.25 -12.44 16 15 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 16 C 0.05 1.75 5.65 87.20 0.49 2.24 16 17 N -0.73 -26.44 13.89 23.21 0.32 -26.12 16 18 Si 0.96 29.83 24.51 68.60 1.68 31.51 16 19 H -0.24 -7.14 6.76 99.48 0.67 -6.47 16 20 H -0.26 -7.54 7.11 99.48 0.71 -6.83 16 21 H -0.25 -8.60 6.62 99.48 0.66 -7.94 16 22 C -0.21 -8.02 7.03 22.62 0.16 -7.86 16 23 C -0.03 -1.21 9.50 21.96 0.21 -1.00 16 24 C -0.15 -6.53 6.92 36.78 0.25 -6.28 16 25 N 0.06 2.78 4.98 -45.50 -0.23 2.55 16 26 O -0.37 -19.78 19.14 3.51 0.07 -19.71 16 27 O -0.36 -17.32 16.29 3.53 0.06 -17.26 16 28 C 0.04 0.85 7.04 86.45 0.61 1.46 16 29 N -0.65 -14.76 7.35 -482.38 -3.55 -18.31 16 30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 33 H 0.09 2.21 7.65 -2.39 -0.02 2.19 16 34 H 0.09 1.85 7.86 -2.39 -0.02 1.84 16 35 H 0.41 15.27 4.53 -113.07 -0.51 14.76 16 36 H 0.14 4.50 6.08 -2.91 -0.02 4.48 16 37 H 0.32 10.00 8.27 -92.71 -0.77 9.24 16 38 H 0.13 4.54 4.31 -2.91 -0.01 4.52 16 39 H 0.13 5.20 7.56 -2.91 -0.02 5.18 16 40 H 0.10 2.22 7.90 -2.39 -0.02 2.20 16 41 H 0.08 2.19 8.06 -2.39 -0.02 2.18 16 42 H 0.35 7.96 7.79 -89.69 -0.70 7.26 16 Total: -1.00 -55.99 352.90 0.88 -55.11 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.18 Total: 44.47 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.52 Total: -4.59 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -5.07 Total: -68.08 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -0.07 Total: -58.42 kcal Atomic # 14 Polarization: 29.83 SS G_CDS: 1.68 Total: 31.51 kcal Total: -55.99 0.88 -55.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169136624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.140 kcal (2) G-P(sol) polarization free energy of solvation -55.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds