Wall clock time and date at job start Tue Mar 31 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45191 * 109.47583 * 2 1 4 4 C 1.34222 * 117.00201 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00115 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.47208 * 179.97438 * 6 4 3 8 8 C 1.46893 * 111.00212 * 293.95640 * 7 6 4 9 9 C 1.50701 * 109.47309 * 164.14585 * 8 7 6 10 10 H 1.07999 * 119.99886 * 4.51334 * 9 8 7 11 11 C 1.37878 * 120.00017 * 184.51734 * 9 8 7 12 12 N 1.31513 * 120.00178 * 5.06251 * 11 9 8 13 13 Si 1.86802 * 119.99661 * 184.79141 * 11 9 8 14 14 H 1.48503 * 109.46938 * 270.27024 * 13 11 9 15 15 H 1.48498 * 109.47354 * 30.27579 * 13 11 9 16 16 H 1.48504 * 109.46943 * 150.27677 * 13 11 9 17 17 C 1.46900 * 110.99921 * 169.99835 * 7 6 4 18 18 H 1.08994 * 109.55252 * 172.85386 * 17 7 6 19 19 C 1.53527 * 109.55302 * 52.65320 * 17 7 6 20 20 S 1.81610 * 107.32412 * 167.57998 * 19 17 7 21 21 C 1.76453 * 102.62857 * 46.40420 * 20 19 17 22 22 C 1.39633 * 117.72152 * 166.66060 * 21 20 19 23 23 C 1.37742 * 120.62342 * 179.47644 * 22 21 20 24 24 C 1.38344 * 119.51461 * 359.88208 * 23 22 21 25 25 C 1.37763 * 120.00682 * 0.30176 * 24 23 22 26 26 C 1.38171 * 122.30844 * 346.59476 * 21 20 19 27 27 C 1.50041 * 124.74588 * 1.92328 * 26 21 20 28 28 H 1.08999 * 109.47096 * 59.99630 * 1 2 3 29 29 H 1.09000 * 109.47830 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46916 * 300.00124 * 1 2 3 31 31 H 1.09000 * 109.46916 * 239.99876 * 2 1 3 32 32 H 1.08997 * 109.46605 * 120.00548 * 2 1 3 33 33 H 1.09002 * 109.46901 * 60.00398 * 6 4 3 34 34 H 1.08995 * 109.47711 * 300.00274 * 6 4 3 35 35 H 1.09002 * 109.47580 * 44.14532 * 8 7 6 36 36 H 1.09003 * 109.47083 * 284.14522 * 8 7 6 37 37 H 0.97002 * 120.00143 * 354.55507 * 12 11 9 38 38 H 1.09001 * 109.88510 * 287.03666 * 19 17 7 39 39 H 1.09005 * 109.88548 * 48.12605 * 19 17 7 40 40 H 1.07997 * 119.68942 * 359.49871 * 22 21 20 41 41 H 1.08003 * 120.24376 * 179.90281 * 23 22 21 42 42 H 1.08000 * 119.99365 * 180.32711 * 24 23 22 43 43 H 1.08004 * 119.47277 * 180.11265 * 25 24 23 44 44 H 1.09000 * 108.66599 * 215.68724 * 27 26 21 45 45 H 1.08996 * 108.67271 * 97.78833 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3447 1.5446 0.0005 5 8 4.0807 0.5864 0.0005 6 6 3.9208 2.9372 0.0012 7 7 5.3879 2.8602 0.0023 8 6 5.8835 2.2764 1.2558 9 6 7.3195 1.8544 1.0802 10 1 7.8368 2.0705 0.1571 11 6 7.9729 1.1924 2.0980 12 7 7.3161 0.8410 3.1819 13 14 9.7892 0.7879 1.9341 14 1 9.9441 -0.5440 1.2958 15 1 10.4522 1.8188 1.0957 16 1 10.4152 0.7673 3.2806 17 6 5.9845 4.1814 -0.2353 18 1 7.0650 4.1226 -0.1043 19 6 5.4008 5.1951 0.7591 20 16 6.4263 6.6913 0.6707 21 6 6.5872 6.9467 -1.0678 22 6 7.0826 8.1784 -1.5003 23 6 7.2427 8.4378 -2.8436 24 6 6.9107 7.4652 -3.7698 25 6 6.4180 6.2503 -3.3466 26 6 6.2436 5.9781 -1.9914 27 6 5.6657 4.6365 -1.6488 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 3.5846 3.4690 0.8912 34 1 3.5853 3.4697 -0.8887 35 1 5.2788 1.4077 1.5162 36 1 5.8173 3.0172 2.0527 37 1 6.3935 1.1159 3.3005 38 1 4.3730 5.4333 0.4853 39 1 5.4309 4.7841 1.7682 40 1 7.3431 8.9348 -0.7748 41 1 7.6250 9.3932 -3.1714 42 1 7.0381 7.6584 -4.8247 43 1 6.1633 5.4966 -4.0770 44 1 6.0571 3.8989 -2.3494 45 1 4.5829 4.6831 -1.7644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172207964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:50 Heat of formation + Delta-G solvation = -52.982982 kcal Electronic energy + Delta-G solvation = -26953.944214 eV Core-core repulsion = 23255.653085 eV Total energy + Delta-G solvation = -3698.291129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27028 -39.43715 -37.94454 -36.13431 -33.68613 -32.55266 -31.72547 -30.99115 -29.89750 -28.24397 -27.01883 -25.21429 -23.23715 -22.98522 -22.65461 -21.48483 -20.93267 -19.22153 -17.82809 -17.30646 -16.93656 -16.32761 -16.11645 -15.80026 -15.60361 -14.99335 -14.56731 -14.32160 -14.19241 -13.86885 -13.72771 -13.63428 -13.42938 -12.99671 -12.89196 -12.79067 -12.60827 -12.37105 -11.89083 -11.67682 -11.58766 -11.51432 -11.32642 -11.28556 -11.12857 -10.73035 -10.62623 -10.49201 -10.29594 -10.06607 -10.02289 -9.77910 -9.66824 -8.79619 -8.72191 -8.23657 -7.70989 -7.18633 -6.32317 -3.99780 1.22102 1.32251 1.72787 2.51100 2.63917 2.81354 3.48372 3.51883 3.66350 3.67147 4.34022 4.59085 4.77394 4.83697 4.88046 4.92095 4.92923 5.01539 5.04053 5.09042 5.26476 5.28972 5.29902 5.41978 5.43276 5.45543 5.55730 5.60106 5.66644 5.70482 5.73762 5.81266 5.89232 5.94386 6.15613 6.26355 6.38880 6.43200 6.49906 6.68310 6.85987 6.86764 6.91877 7.58279 7.75497 8.16063 8.28549 8.57609 8.89611 9.68337 11.06643 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.007717 B = 0.004651 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3627.716046 B = 6018.829230 C = 8576.256581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.452 3.548 5 O -0.464 6.464 6 C 0.055 3.945 7 N -0.501 5.501 8 C 0.176 3.824 9 C -0.577 4.577 10 H 0.056 0.944 11 C 0.017 3.983 12 N -0.914 5.914 13 Si 1.072 2.928 14 H -0.288 1.288 15 H -0.287 1.287 16 H -0.285 1.285 17 C 0.099 3.901 18 H 0.116 0.884 19 C -0.138 4.138 20 S -0.116 6.116 21 C -0.073 4.073 22 C -0.102 4.102 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.107 4.107 26 C -0.072 4.072 27 C -0.085 4.085 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.041 0.959 36 H -0.019 1.019 37 H 0.265 0.735 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.094 0.906 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 10.963 -10.750 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.292 3.708 5 O -0.347 6.347 6 C -0.074 4.074 7 N -0.225 5.225 8 C 0.052 3.948 9 C -0.616 4.616 10 H 0.075 0.925 11 C -0.187 4.187 12 N -0.551 5.551 13 Si 0.900 3.100 14 H -0.215 1.215 15 H -0.213 1.213 16 H -0.211 1.211 17 C -0.010 4.010 18 H 0.134 0.866 19 C -0.288 4.288 20 S 0.127 5.873 21 C -0.186 4.186 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.146 4.146 25 C -0.127 4.127 26 C -0.079 4.079 27 C -0.122 4.122 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.059 0.941 36 H -0.001 1.001 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.112 0.888 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.632 10.085 -9.324 15.712 hybrid contribution -2.075 0.373 -1.125 2.390 sum -9.707 10.457 -10.449 17.685 Atomic orbital electron populations 1.21785 0.92977 1.02689 1.03237 1.22928 0.94902 0.80743 1.02649 1.86452 1.25276 1.32029 1.85091 1.23622 0.80139 0.93143 0.73899 1.90769 1.59601 1.42445 1.41840 1.21631 0.92180 0.90367 1.03199 1.62061 1.00610 1.19345 1.40500 1.20096 0.97896 0.93609 0.83241 1.21824 0.95448 1.41346 1.02982 0.92539 1.25768 1.05979 0.93858 0.93078 1.70757 1.12451 1.42851 1.29016 0.83503 0.74432 0.76310 0.75722 1.21495 1.21349 1.21125 1.21740 1.01976 0.85837 0.91488 0.86634 1.24678 1.00906 0.96546 1.06677 1.85440 1.66052 1.34382 1.01418 1.21479 1.03884 0.96610 0.96622 1.20865 1.00415 0.95109 0.96146 1.20972 1.00274 0.99320 0.92614 1.21007 1.00225 0.93867 0.99493 1.21229 0.99447 0.97317 0.94676 1.19651 1.00175 0.94813 0.93217 1.20388 1.00537 0.92996 0.98308 0.91688 0.90472 0.91627 0.91419 0.91318 0.91566 0.87736 0.94128 1.00123 0.92503 0.89616 0.86473 0.85762 0.85769 0.86042 0.85937 0.88805 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.82 6.18 37.16 0.23 1.05 16 3 O -0.37 -5.77 10.22 -39.24 -0.40 -6.17 16 4 C 0.45 8.36 7.52 36.01 0.27 8.63 16 5 O -0.46 -10.62 14.23 -18.75 -0.27 -10.89 16 6 C 0.06 0.92 4.55 -4.97 -0.02 0.90 16 7 N -0.50 -10.13 4.13 -229.88 -0.95 -11.08 16 8 C 0.18 4.42 3.61 -4.98 -0.02 4.40 16 9 C -0.58 -16.34 8.51 -34.44 -0.29 -16.63 16 10 H 0.06 1.61 7.44 -52.49 -0.39 1.22 16 11 C 0.02 0.48 5.45 -17.82 -0.10 0.39 16 12 N -0.91 -28.15 13.65 55.43 0.76 -27.39 16 13 Si 1.07 26.01 29.91 -169.99 -5.08 20.93 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.10 1.76 1.99 -68.01 -0.14 1.63 16 18 H 0.12 2.44 6.90 -51.93 -0.36 2.08 16 19 C -0.14 -2.20 4.73 37.43 0.18 -2.02 16 20 S -0.12 -1.81 21.99 -107.50 -2.36 -4.17 16 21 C -0.07 -1.07 6.05 -39.09 -0.24 -1.30 16 22 C -0.10 -1.29 9.65 -39.24 -0.38 -1.67 16 23 C -0.11 -1.21 10.06 -39.72 -0.40 -1.61 16 24 C -0.13 -1.35 10.03 -39.72 -0.40 -1.74 16 25 C -0.11 -1.30 9.48 -39.35 -0.37 -1.67 16 26 C -0.07 -1.02 5.77 -104.56 -0.60 -1.62 16 27 C -0.08 -1.24 4.57 -28.77 -0.13 -1.37 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 32 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.07 1.02 7.11 -51.93 -0.37 0.65 16 34 H 0.10 1.41 6.09 -51.93 -0.32 1.10 16 35 H 0.04 1.13 5.40 -51.93 -0.28 0.85 16 36 H -0.02 -0.47 6.22 -51.93 -0.32 -0.80 16 37 H 0.26 8.14 7.16 -40.82 -0.29 7.85 16 38 H 0.09 1.18 7.32 -51.93 -0.38 0.80 16 39 H 0.12 2.07 6.30 -51.93 -0.33 1.74 16 40 H 0.12 1.40 8.05 -52.49 -0.42 0.98 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.26 8.01 -52.48 -0.42 0.84 16 44 H 0.09 1.40 8.02 -51.93 -0.42 0.99 16 45 H 0.07 0.96 6.29 -51.93 -0.33 0.63 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -33.32 371.02 -11.12 -44.44 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.38 Total: 2.41 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.03 Total: -13.67 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.19 Total: -38.48 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.67 Total: -17.05 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.93 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.36 Total: -4.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.32 -11.12 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172207964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.541 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds