Wall clock time and date at job start Tue Mar 31 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45191 * 109.47583 * 2 1 4 4 C 1.34222 * 117.00201 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00039 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00115 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.47208 * 179.97438 * 6 4 3 8 8 C 1.46893 * 111.00212 * 293.95640 * 7 6 4 9 9 C 1.50701 * 109.47309 * 164.14585 * 8 7 6 10 10 H 1.07999 * 119.99886 * 4.51334 * 9 8 7 11 11 C 1.37878 * 120.00017 * 184.51734 * 9 8 7 12 12 N 1.31513 * 120.00178 * 5.06251 * 11 9 8 13 13 Si 1.86802 * 119.99661 * 184.79141 * 11 9 8 14 14 H 1.48503 * 109.46938 * 270.27024 * 13 11 9 15 15 H 1.48498 * 109.47354 * 30.27579 * 13 11 9 16 16 H 1.48504 * 109.46943 * 150.27677 * 13 11 9 17 17 C 1.46900 * 110.99921 * 169.99835 * 7 6 4 18 18 H 1.08994 * 109.55252 * 172.85386 * 17 7 6 19 19 C 1.53527 * 109.55302 * 52.65320 * 17 7 6 20 20 S 1.81610 * 107.32412 * 167.57998 * 19 17 7 21 21 C 1.76453 * 102.62857 * 46.40420 * 20 19 17 22 22 C 1.39633 * 117.72152 * 166.66060 * 21 20 19 23 23 C 1.37742 * 120.62342 * 179.47644 * 22 21 20 24 24 C 1.38344 * 119.51461 * 359.88208 * 23 22 21 25 25 C 1.37763 * 120.00682 * 0.30176 * 24 23 22 26 26 C 1.38171 * 122.30844 * 346.59476 * 21 20 19 27 27 C 1.50041 * 124.74588 * 1.92328 * 26 21 20 28 28 H 1.08999 * 109.47096 * 59.99630 * 1 2 3 29 29 H 1.09000 * 109.47830 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46916 * 300.00124 * 1 2 3 31 31 H 1.09000 * 109.46916 * 239.99876 * 2 1 3 32 32 H 1.08997 * 109.46605 * 120.00548 * 2 1 3 33 33 H 1.09002 * 109.46901 * 60.00398 * 6 4 3 34 34 H 1.08995 * 109.47711 * 300.00274 * 6 4 3 35 35 H 1.09002 * 109.47580 * 44.14532 * 8 7 6 36 36 H 1.09003 * 109.47083 * 284.14522 * 8 7 6 37 37 H 0.97002 * 120.00143 * 354.55507 * 12 11 9 38 38 H 1.09001 * 109.88510 * 287.03666 * 19 17 7 39 39 H 1.09005 * 109.88548 * 48.12605 * 19 17 7 40 40 H 1.07997 * 119.68942 * 359.49871 * 22 21 20 41 41 H 1.08003 * 120.24376 * 179.90281 * 23 22 21 42 42 H 1.08000 * 119.99365 * 180.32711 * 24 23 22 43 43 H 1.08004 * 119.47277 * 180.11265 * 25 24 23 44 44 H 1.09000 * 108.66599 * 215.68724 * 27 26 21 45 45 H 1.08996 * 108.67271 * 97.78833 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3447 1.5446 0.0005 5 8 4.0807 0.5864 0.0005 6 6 3.9208 2.9372 0.0012 7 7 5.3879 2.8602 0.0023 8 6 5.8835 2.2764 1.2558 9 6 7.3195 1.8544 1.0802 10 1 7.8368 2.0705 0.1571 11 6 7.9729 1.1924 2.0980 12 7 7.3161 0.8410 3.1819 13 14 9.7892 0.7879 1.9341 14 1 9.9441 -0.5440 1.2958 15 1 10.4522 1.8188 1.0957 16 1 10.4152 0.7673 3.2806 17 6 5.9845 4.1814 -0.2353 18 1 7.0650 4.1226 -0.1043 19 6 5.4008 5.1951 0.7591 20 16 6.4263 6.6913 0.6707 21 6 6.5872 6.9467 -1.0678 22 6 7.0826 8.1784 -1.5003 23 6 7.2427 8.4378 -2.8436 24 6 6.9107 7.4652 -3.7698 25 6 6.4180 6.2503 -3.3466 26 6 6.2436 5.9781 -1.9914 27 6 5.6657 4.6365 -1.6488 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 3.5846 3.4690 0.8912 34 1 3.5853 3.4697 -0.8887 35 1 5.2788 1.4077 1.5162 36 1 5.8173 3.0172 2.0527 37 1 6.3935 1.1159 3.3005 38 1 4.3730 5.4333 0.4853 39 1 5.4309 4.7841 1.7682 40 1 7.3431 8.9348 -0.7748 41 1 7.6250 9.3932 -3.1714 42 1 7.0381 7.6584 -4.8247 43 1 6.1633 5.4966 -4.0770 44 1 6.0571 3.8989 -2.3494 45 1 4.5829 4.6831 -1.7644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172207964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:49 Heat of formation + Delta-G solvation = -72.291966 kcal Electronic energy + Delta-G solvation = -26954.781514 eV Core-core repulsion = 23255.653085 eV Total energy + Delta-G solvation = -3699.128429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71719 -40.53151 -39.27830 -37.56342 -35.46322 -34.18751 -32.75274 -31.92706 -31.09707 -29.97127 -28.22271 -26.96483 -24.76551 -24.27832 -23.66199 -22.80685 -22.19165 -20.65554 -19.19074 -18.89695 -18.47287 -17.73562 -17.48382 -16.96981 -16.76791 -16.24052 -15.93387 -15.75597 -15.55821 -15.34905 -15.17413 -15.00225 -14.57143 -14.27631 -14.02681 -13.87460 -13.66458 -13.53137 -13.41461 -13.34597 -13.05446 -12.81797 -12.73425 -12.54341 -12.47361 -12.25959 -12.03053 -11.96376 -11.83190 -11.56478 -11.40120 -11.19308 -10.91262 -10.67952 -10.46177 -9.67029 -9.31848 -8.66160 -8.38607 -6.33204 0.26093 0.39865 0.54979 1.16985 1.32627 1.48871 1.53239 1.58539 1.75874 2.53374 2.73767 2.91766 3.17153 3.49515 3.63164 3.71480 3.83601 3.92966 3.94398 4.02350 4.06400 4.11051 4.14358 4.21919 4.30149 4.33085 4.42510 4.52207 4.61769 4.70475 4.79484 4.84513 4.84884 4.88786 5.02150 5.05620 5.09910 5.11315 5.37726 5.40413 5.50445 5.58361 5.68823 5.95252 6.01693 6.17105 6.34832 6.58424 6.80361 7.43076 8.73031 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.007717 B = 0.004651 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3627.716046 B = 6018.829230 C = 8576.256581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.455 3.545 5 O -0.517 6.517 6 C 0.055 3.945 7 N -0.513 5.513 8 C 0.193 3.807 9 C -0.584 4.584 10 H 0.048 0.952 11 C -0.037 4.037 12 N -0.939 5.939 13 Si 1.116 2.884 14 H -0.278 1.278 15 H -0.269 1.269 16 H -0.281 1.281 17 C 0.105 3.895 18 H 0.074 0.926 19 C -0.129 4.129 20 S -0.141 6.141 21 C -0.093 4.093 22 C -0.113 4.113 23 C -0.106 4.106 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.090 4.090 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.012 0.988 36 H -0.030 1.030 37 H 0.251 0.749 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.141 0.859 44 H 0.089 0.911 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 12.860 -13.518 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.278 6.278 4 C 0.298 3.702 5 O -0.404 6.404 6 C -0.073 4.073 7 N -0.237 5.237 8 C 0.067 3.933 9 C -0.622 4.622 10 H 0.066 0.934 11 C -0.234 4.234 12 N -0.577 5.577 13 Si 0.938 3.062 14 H -0.204 1.204 15 H -0.194 1.194 16 H -0.206 1.206 17 C -0.004 4.004 18 H 0.092 0.908 19 C -0.279 4.279 20 S 0.102 5.898 21 C -0.205 4.205 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.132 4.132 26 C -0.096 4.096 27 C -0.112 4.112 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.163 0.837 35 H 0.030 0.970 36 H -0.013 1.013 37 H 0.060 0.940 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.175 0.825 42 H 0.172 0.828 43 H 0.158 0.842 44 H 0.107 0.893 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.375 12.016 -12.121 19.011 hybrid contribution -1.916 -0.144 -0.371 1.957 sum -10.291 11.872 -12.492 20.072 Atomic orbital electron populations 1.21799 0.89419 1.04472 1.03970 1.23264 0.97599 0.79402 1.01932 1.86455 1.23485 1.33563 1.84250 1.23995 0.80718 0.93207 0.72320 1.90752 1.60968 1.44117 1.44582 1.21800 0.89759 0.89988 1.05771 1.61843 1.03101 1.21128 1.37643 1.19652 0.96019 0.92454 0.85201 1.22160 0.97169 1.40529 1.02358 0.93397 1.27223 1.09779 0.93725 0.92639 1.70886 1.11993 1.44627 1.30234 0.82953 0.69953 0.77042 0.76275 1.20355 1.19425 1.20620 1.21573 0.99486 0.85129 0.94250 0.90819 1.24498 1.02343 0.96276 1.04749 1.85432 1.66735 1.33712 1.03928 1.21544 1.05846 0.97945 0.95196 1.21098 1.00397 0.94575 0.97510 1.21386 0.98867 1.00667 0.91608 1.21440 0.98277 0.92897 1.01234 1.21480 0.99263 0.98557 0.93919 1.19678 1.01361 0.94294 0.94315 1.20262 1.01969 0.93451 0.95473 0.90505 0.88162 0.91271 0.91534 0.92853 0.89939 0.83701 0.97042 1.01312 0.93976 0.86972 0.88914 0.85024 0.82550 0.82754 0.84166 0.89292 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 10.29 71.98 0.74 -1.58 16 2 C 0.05 1.35 6.18 71.98 0.45 1.80 16 3 O -0.36 -11.03 10.22 -51.34 -0.52 -11.56 16 4 C 0.46 17.04 7.52 71.24 0.54 17.58 16 5 O -0.52 -24.70 14.23 21.97 0.31 -24.38 16 6 C 0.06 1.81 4.55 85.56 0.39 2.20 16 7 N -0.51 -21.27 4.13 -881.20 -3.64 -24.91 16 8 C 0.19 10.18 3.61 85.56 0.31 10.49 16 9 C -0.58 -34.46 8.51 25.60 0.22 -34.24 16 10 H 0.05 2.84 7.44 -2.91 -0.02 2.82 16 11 C -0.04 -2.21 5.45 84.66 0.46 -1.75 16 12 N -0.94 -60.16 13.65 21.45 0.29 -59.87 16 13 Si 1.12 53.32 29.91 68.60 2.05 55.37 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 C 0.11 3.80 1.99 44.72 0.09 3.89 16 18 H 0.07 3.27 6.90 -2.39 -0.02 3.26 16 19 C -0.13 -4.16 4.73 72.16 0.34 -3.82 16 20 S -0.14 -4.42 21.99 -56.49 -1.24 -5.67 16 21 C -0.09 -2.61 6.05 22.59 0.14 -2.47 16 22 C -0.11 -2.61 9.65 22.49 0.22 -2.40 16 23 C -0.11 -1.89 10.06 22.18 0.22 -1.66 16 24 C -0.12 -2.05 10.03 22.18 0.22 -1.83 16 25 C -0.11 -2.38 9.48 22.42 0.21 -2.17 16 26 C -0.09 -2.40 5.77 -19.83 -0.11 -2.51 16 27 C -0.07 -2.09 4.57 29.27 0.13 -1.95 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 32 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 33 H 0.08 2.48 7.11 -2.39 -0.02 2.47 16 34 H 0.15 3.55 6.09 -2.39 -0.01 3.53 16 35 H 0.01 0.69 5.40 -2.39 -0.01 0.67 16 36 H -0.03 -1.65 6.22 -2.39 -0.01 -1.67 16 37 H 0.25 16.31 7.16 -92.71 -0.66 15.65 16 38 H 0.11 2.96 7.32 -2.39 -0.02 2.94 16 39 H 0.09 3.44 6.30 -2.38 -0.02 3.43 16 40 H 0.13 2.76 8.05 -2.91 -0.02 2.73 16 41 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.14 2.41 8.01 -2.91 -0.02 2.39 16 44 H 0.09 2.57 8.02 -2.39 -0.02 2.56 16 45 H 0.10 2.21 6.29 -2.39 -0.02 2.20 16 Total: -1.00 -77.00 371.02 2.91 -74.09 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.10 Total: 17.37 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 4.56 Total: -20.44 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -3.35 Total: -84.78 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.21 Total: -35.94 kcal Atomic # 14 Polarization: 53.32 SS G_CDS: 2.05 Total: 55.37 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -1.24 Total: -5.67 kcal Total: -77.00 2.91 -74.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172207964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.799 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds