Wall clock time and date at job start Tue Mar 31 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47474 * 2 1 4 4 C 1.34223 * 117.00281 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00282 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00244 * 179.97438 * 4 3 2 7 7 N 1.46893 * 109.47356 * 175.37470 * 6 4 3 8 8 C 1.46899 * 110.99893 * 76.20394 * 7 6 4 9 9 C 1.50701 * 109.47446 * 199.34094 * 8 7 6 10 10 H 1.08003 * 119.99766 * 355.12185 * 9 8 7 11 11 C 1.37878 * 120.00341 * 175.12361 * 9 8 7 12 12 N 1.31511 * 119.99929 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 119.99700 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.46861 * 90.00547 * 13 11 9 15 15 H 1.48494 * 109.47403 * 330.00328 * 13 11 9 16 16 H 1.48503 * 109.46897 * 210.00174 * 13 11 9 17 17 C 1.46905 * 111.00207 * 200.15278 * 7 6 4 18 18 H 1.09001 * 109.55126 * 185.85046 * 17 7 6 19 19 C 1.53519 * 109.55187 * 306.05225 * 17 7 6 20 20 S 1.81616 * 107.31509 * 192.41740 * 19 17 7 21 21 C 1.76458 * 102.62536 * 313.56082 * 20 19 17 22 22 C 1.39633 * 117.72416 * 193.37180 * 21 20 19 23 23 C 1.37743 * 120.62368 * 180.47633 * 22 21 20 24 24 C 1.38340 * 119.51188 * 0.15321 * 23 22 21 25 25 C 1.37765 * 120.01529 * 359.67874 * 24 23 22 26 26 C 1.38181 * 122.30300 * 13.43540 * 21 20 19 27 27 C 1.50045 * 124.74733 * 358.09052 * 26 21 20 28 28 H 1.08996 * 109.47067 * 60.00014 * 1 2 3 29 29 H 1.09002 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47083 * 300.00354 * 1 2 3 31 31 H 1.09009 * 109.47084 * 239.99931 * 2 1 3 32 32 H 1.09003 * 109.47467 * 120.00026 * 2 1 3 33 33 H 1.09003 * 109.46596 * 55.37675 * 6 4 3 34 34 H 1.08994 * 109.46856 * 295.38209 * 6 4 3 35 35 H 1.09007 * 109.47485 * 79.33923 * 8 7 6 36 36 H 1.09007 * 109.46855 * 319.33991 * 8 7 6 37 37 H 0.97006 * 120.00067 * 179.97438 * 12 11 9 38 38 H 1.09005 * 109.88497 * 311.86439 * 19 17 7 39 39 H 1.08998 * 109.88898 * 72.89122 * 19 17 7 40 40 H 1.07993 * 119.68862 * 0.47503 * 22 21 20 41 41 H 1.08000 * 120.24150 * 180.16831 * 23 22 21 42 42 H 1.08003 * 119.99264 * 179.66238 * 24 23 22 43 43 H 1.07990 * 119.47584 * 179.97438 * 25 24 23 44 44 H 1.08995 * 108.66238 * 262.15560 * 27 26 21 45 45 H 1.08997 * 108.66386 * 144.26396 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 7 5.3836 2.8622 0.1100 8 6 5.9891 2.4674 -1.1688 9 6 7.3814 1.9445 -0.9253 10 1 7.8064 1.9820 0.0669 11 6 8.1126 1.4184 -1.9690 12 7 9.3278 0.9626 -1.7565 13 14 7.3773 1.3530 -3.6850 14 1 7.7064 2.6049 -4.4125 15 1 5.9024 1.2108 -3.5864 16 1 7.9386 0.1911 -4.4200 17 6 5.9415 4.1352 0.5858 18 1 7.0302 4.0883 0.5608 19 6 5.4556 5.2783 -0.3163 20 16 6.4542 6.7423 0.0810 21 6 6.4311 6.7577 1.8453 22 6 6.8681 7.9163 2.4906 23 6 6.8844 7.9898 3.8660 24 6 6.4660 6.9022 4.6115 25 6 6.0309 5.7588 3.9781 26 6 6.0016 5.6743 2.5877 27 6 5.4744 4.3950 2.0074 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5204 3.4965 0.8445 34 1 3.6523 3.4411 -0.9296 35 1 6.0364 3.3321 -1.8309 36 1 5.3841 1.6878 -1.6319 37 1 9.8422 0.5920 -2.4908 38 1 5.5934 5.0085 -1.3634 39 1 4.4027 5.4823 -0.1217 40 1 7.1965 8.7628 1.9059 41 1 7.2211 8.8900 4.3587 42 1 6.4808 6.9493 5.6904 43 1 5.7067 4.9148 4.5686 44 1 4.3851 4.4311 2.0155 45 1 5.7979 3.5667 2.6378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172207966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:52 Heat of formation + Delta-G solvation = -65.842736 kcal Electronic energy + Delta-G solvation = -26939.819935 eV Core-core repulsion = 23240.971166 eV Total energy + Delta-G solvation = -3698.848769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59639 -40.50228 -39.23726 -37.47257 -35.15605 -34.19921 -32.71331 -31.90890 -31.12128 -30.64885 -28.15858 -27.40555 -24.34296 -24.19473 -23.61161 -22.61891 -22.10972 -20.48411 -19.10927 -18.93599 -18.41963 -17.71866 -17.38590 -16.99728 -16.74994 -16.43742 -16.09722 -15.66813 -15.50823 -15.26295 -15.06448 -14.85651 -14.52557 -14.46270 -14.06268 -13.83200 -13.77153 -13.60137 -13.45067 -13.40503 -12.84445 -12.80347 -12.67755 -12.48504 -12.42008 -12.24421 -12.01151 -11.89612 -11.76999 -11.63403 -11.49028 -11.27221 -11.12560 -10.79037 -10.65921 -9.64954 -9.25069 -8.33664 -8.27887 -6.28742 0.28472 0.41551 0.60457 1.26814 1.27841 1.31677 1.37462 1.40054 1.60258 2.31538 2.75408 2.93370 3.08322 3.54135 3.67854 3.78326 3.88094 3.96967 4.00134 4.04891 4.12138 4.15746 4.21338 4.27326 4.35047 4.36346 4.46933 4.54131 4.62950 4.72459 4.80385 4.85598 4.87749 4.93679 5.03353 5.07090 5.13595 5.15174 5.39322 5.46754 5.52245 5.55185 5.60017 5.83492 6.03123 6.12242 6.49228 6.74600 6.89265 7.31900 8.89508 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.004588 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.975583 B = 6101.172099 C = 8435.012003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.455 3.545 5 O -0.519 6.519 6 C 0.054 3.946 7 N -0.518 5.518 8 C 0.176 3.824 9 C -0.500 4.500 10 H 0.034 0.966 11 C 0.008 3.992 12 N -0.949 5.949 13 Si 0.939 3.061 14 H -0.260 1.260 15 H -0.256 1.256 16 H -0.283 1.283 17 C 0.105 3.895 18 H 0.069 0.931 19 C -0.131 4.131 20 S -0.141 6.141 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.090 4.090 27 C -0.075 4.075 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.003 0.997 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.138 0.862 44 H 0.099 0.901 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.575 12.044 9.007 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 O -0.278 6.278 4 C 0.298 3.702 5 O -0.406 6.406 6 C -0.075 4.075 7 N -0.242 5.242 8 C 0.049 3.951 9 C -0.539 4.539 10 H 0.052 0.948 11 C -0.189 4.189 12 N -0.590 5.590 13 Si 0.762 3.238 14 H -0.184 1.184 15 H -0.180 1.180 16 H -0.209 1.209 17 C -0.005 4.005 18 H 0.088 0.912 19 C -0.281 4.281 20 S 0.102 5.898 21 C -0.205 4.205 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.096 4.096 27 C -0.113 4.113 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.114 0.886 35 H 0.020 0.980 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.156 0.844 44 H 0.117 0.883 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.631 11.967 8.351 22.126 hybrid contribution -0.090 -1.155 -0.736 1.372 sum -16.721 10.813 7.615 21.319 Atomic orbital electron populations 1.21796 0.89685 1.04343 1.03931 1.23252 0.97413 0.79547 1.02018 1.86462 1.23617 1.33399 1.84293 1.24094 0.80610 0.93286 0.72255 1.90753 1.61058 1.44063 1.44685 1.21800 0.89456 0.90117 1.06115 1.61553 1.02080 1.29033 1.31538 1.20004 0.94081 0.94366 0.86630 1.21118 0.98427 1.38947 0.95372 0.94801 1.25761 0.95077 0.94789 1.03235 1.70047 1.11974 1.43347 1.33622 0.85847 0.79577 0.78577 0.79759 1.18449 1.17973 1.20871 1.21548 0.99785 0.85208 0.93919 0.91237 1.24588 1.02996 0.95636 1.04893 1.85430 1.67791 1.35681 1.00938 1.21547 1.05540 0.97579 0.95819 1.21106 1.00737 0.96037 0.95748 1.21378 0.98759 0.99912 0.92599 1.21424 0.98387 0.92769 1.01429 1.21479 0.99752 0.99506 0.92698 1.19691 1.01266 0.93811 0.94880 1.20276 1.01727 0.94725 0.94534 0.91128 0.88356 0.90751 0.92426 0.91779 0.83946 0.88614 0.97972 0.95719 0.92612 0.87574 0.86414 0.84953 0.82627 0.82921 0.84401 0.88265 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.29 71.98 0.74 -1.32 16 2 C 0.05 1.21 6.19 71.98 0.45 1.66 16 3 O -0.36 -9.96 10.22 -51.35 -0.52 -10.49 16 4 C 0.46 15.56 7.62 71.24 0.54 16.10 16 5 O -0.52 -23.07 14.95 21.96 0.33 -22.74 16 6 C 0.05 1.58 4.27 85.56 0.37 1.94 16 7 N -0.52 -20.30 3.97 -881.20 -3.49 -23.79 16 8 C 0.18 8.38 3.24 85.56 0.28 8.65 16 9 C -0.50 -29.76 9.16 25.60 0.23 -29.52 16 10 H 0.03 2.27 7.88 -2.91 -0.02 2.24 16 11 C 0.01 0.50 5.47 84.66 0.46 0.96 16 12 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 13 Si 0.94 45.63 27.57 68.60 1.89 47.52 16 14 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.26 -11.77 6.40 99.48 0.64 -11.14 16 16 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 17 C 0.10 3.65 2.01 44.72 0.09 3.74 16 18 H 0.07 3.10 7.19 -2.39 -0.02 3.08 16 19 C -0.13 -3.84 4.90 72.16 0.35 -3.49 16 20 S -0.14 -4.24 21.99 -56.49 -1.24 -5.49 16 21 C -0.09 -2.59 6.05 22.59 0.14 -2.45 16 22 C -0.11 -2.66 9.65 22.49 0.22 -2.44 16 23 C -0.11 -1.99 10.06 22.18 0.22 -1.77 16 24 C -0.12 -2.20 10.03 22.18 0.22 -1.98 16 25 C -0.11 -2.55 9.48 22.42 0.21 -2.33 16 26 C -0.09 -2.43 5.77 -19.82 -0.11 -2.55 16 27 C -0.08 -2.12 4.57 29.27 0.13 -1.98 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.47 8.13 -2.38 -0.02 1.45 16 32 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 33 H 0.14 3.12 5.81 -2.39 -0.01 3.10 16 34 H 0.10 2.42 7.59 -2.39 -0.02 2.40 16 35 H 0.00 0.13 5.76 -2.38 -0.01 0.11 16 36 H 0.02 1.25 5.38 -2.38 -0.01 1.23 16 37 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 38 H 0.11 3.34 6.21 -2.38 -0.01 3.32 16 39 H 0.12 2.68 7.50 -2.39 -0.02 2.66 16 40 H 0.13 2.79 8.05 -2.91 -0.02 2.76 16 41 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.14 2.56 8.01 -2.92 -0.02 2.53 16 44 H 0.10 2.22 6.12 -2.39 -0.01 2.20 16 45 H 0.08 2.51 8.02 -2.39 -0.02 2.49 16 Total: -1.00 -77.78 370.68 2.73 -75.06 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.92 Total: 17.86 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 4.54 Total: -16.78 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -3.19 Total: -84.94 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.20 Total: -33.23 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.89 Total: 47.52 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -1.24 Total: -5.49 kcal Total: -77.78 2.73 -75.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172207966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.214 kcal (2) G-P(sol) polarization free energy of solvation -77.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds