Wall clock time and date at job start Tue Mar 31 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81395 * 109.47220 * 2 1 4 4 O 1.42100 * 110.54420 * 68.37857 * 3 2 1 5 5 O 1.42103 * 110.54296 * 291.62444 * 3 2 1 6 6 N 1.65600 * 104.45022 * 180.02562 * 3 2 1 7 7 C 1.46507 * 119.99564 * 64.99859 * 6 3 2 8 8 H 1.08991 * 109.47384 * 335.00185 * 7 6 3 9 9 C 1.53005 * 109.46788 * 95.00363 * 7 6 3 10 10 C 1.50700 * 109.47022 * 214.99737 * 7 6 3 11 11 O 1.21283 * 120.00036 * 0.02562 * 10 7 6 12 12 N 1.34768 * 120.00074 * 180.02562 * 10 7 6 13 13 C 1.46503 * 120.00219 * 180.02562 * 12 10 7 14 14 H 1.08995 * 110.63935 * 31.86261 * 13 12 10 15 15 C 1.54327 * 111.00269 * 268.78467 * 13 12 10 16 16 N 1.47029 * 107.26766 * 219.60190 * 15 13 12 17 17 C 1.36939 * 125.65021 * 178.84914 * 16 15 13 18 18 H 1.07997 * 119.99773 * 347.79313 * 17 16 15 19 19 C 1.38811 * 119.99509 * 167.78740 * 17 16 15 20 20 N 1.31613 * 120.00608 * 325.97825 * 19 17 16 21 21 Si 1.86806 * 119.99274 * 145.97884 * 19 17 16 22 22 H 1.48495 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47063 * 239.99759 * 21 19 17 24 24 H 1.48501 * 109.46672 * 120.00021 * 21 19 17 25 25 C 1.47428 * 108.69861 * 358.58470 * 16 15 13 26 26 C 1.54903 * 104.83505 * 24.35538 * 25 16 15 27 27 H 1.09001 * 111.00122 * 81.06209 * 26 25 16 28 28 O 1.42894 * 111.00994 * 204.91546 * 26 25 16 29 29 H 1.09004 * 109.46667 * 299.99938 * 1 2 3 30 30 H 1.09003 * 109.47396 * 59.99350 * 1 2 3 31 31 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46667 * 240.00062 * 2 1 3 33 33 H 1.08998 * 109.46939 * 120.00555 * 2 1 3 34 34 H 0.96997 * 120.00480 * 245.00695 * 6 3 2 35 35 H 1.09007 * 109.46953 * 59.99882 * 9 7 6 36 36 H 1.08999 * 109.46636 * 179.97438 * 9 7 6 37 37 H 1.09002 * 109.46881 * 299.99768 * 9 7 6 38 38 H 0.96997 * 120.00307 * 0.02562 * 12 10 7 39 39 H 1.09003 * 109.99553 * 100.12694 * 15 13 12 40 40 H 1.09003 * 109.78069 * 338.95243 * 15 13 12 41 41 H 0.96997 * 119.99747 * 354.25193 * 20 19 17 42 42 H 1.08994 * 110.36433 * 143.19827 * 25 16 15 43 43 H 1.09003 * 110.36298 * 265.51907 * 25 16 15 44 44 H 0.96704 * 114.00068 * 298.55417 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4666 0.9671 -1.1510 8 1 3.7805 0.3013 -1.6745 9 6 4.9287 2.0733 -2.1017 10 6 5.6618 0.1829 -0.6742 11 8 5.9183 0.1286 0.5100 12 7 6.4458 -0.4580 -1.5635 13 6 7.6074 -1.2208 -1.0999 14 1 7.4196 -1.6454 -0.1138 15 6 8.8744 -0.3399 -1.0772 16 7 9.9911 -1.1691 -1.5539 17 6 11.2869 -0.7526 -1.7044 18 1 11.5248 0.2998 -1.6571 19 6 12.2946 -1.6832 -1.9176 20 7 12.2247 -2.8700 -1.3529 21 14 13.7499 -1.2510 -3.0061 22 1 13.5913 0.1340 -3.5176 23 1 13.8109 -2.1965 -4.1495 24 1 15.0041 -1.3472 -2.2168 25 6 9.4859 -2.5248 -1.8370 26 6 7.9741 -2.3345 -2.1162 27 1 7.8050 -2.0003 -3.1398 28 8 7.2479 -3.5348 -1.8448 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.2989 1.8762 0.7604 35 1 5.6148 2.7391 -1.5781 36 1 5.4366 1.6283 -2.9573 37 1 4.0641 2.6406 -2.4466 38 1 6.2409 -0.4143 -2.5106 39 1 9.0732 0.0009 -0.0611 40 1 8.7402 0.5164 -1.7381 41 1 11.5141 -3.0660 -0.7224 42 1 9.9841 -2.9401 -2.7129 43 1 9.6334 -3.1727 -0.9729 44 1 7.5135 -4.2873 -2.3912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193148250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:41 Heat of formation + Delta-G solvation = -130.692493 kcal Electronic energy + Delta-G solvation = -27804.774305 eV Core-core repulsion = 23692.264176 eV Total energy + Delta-G solvation = -4112.510129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.22638 -38.32540 -37.43695 -36.30206 -35.71734 -35.36523 -34.41612 -33.59978 -32.01397 -30.23490 -28.36041 -27.37476 -24.81352 -24.50943 -23.93535 -21.00424 -20.81812 -20.18669 -19.74863 -18.53301 -17.78363 -17.35314 -17.17119 -16.70690 -16.29676 -15.99311 -15.39467 -15.25823 -14.62083 -14.39575 -14.22901 -13.88509 -13.73663 -13.61662 -13.46993 -13.27185 -12.96945 -12.84434 -12.63279 -12.44372 -12.33414 -12.30645 -12.10559 -12.05983 -11.92060 -11.78406 -11.63840 -11.09390 -10.82622 -10.60863 -10.25525 -10.24724 -10.12121 -9.99686 -9.75084 -9.56205 -9.05016 -8.44430 -7.12349 -6.26483 -3.21716 -0.11837 2.24793 2.45754 3.02198 3.43031 3.47266 3.48210 3.63439 3.79379 4.12050 4.19399 4.24173 4.39478 4.48586 4.54336 4.70066 4.73243 4.88930 4.97388 5.11661 5.15198 5.25710 5.30830 5.43208 5.44538 5.46049 5.46921 5.62110 5.80852 5.84202 5.92082 6.21168 6.47479 6.60385 6.64286 6.70200 6.77850 7.40893 7.63387 7.79233 8.08830 8.36325 8.86689 9.68549 10.19682 11.07634 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.002504 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.370532 B =11177.462046 C =11675.517216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.614 3.386 4 O -0.954 6.954 5 O -0.952 6.952 6 N -1.101 6.101 7 C 0.136 3.864 8 H 0.106 0.894 9 C -0.169 4.169 10 C 0.508 3.492 11 O -0.528 6.528 12 N -0.709 5.709 13 C 0.141 3.859 14 H 0.104 0.896 15 C 0.130 3.870 16 N -0.597 5.597 17 C -0.346 4.346 18 H 0.071 0.929 19 C -0.021 4.021 20 N -0.907 5.907 21 Si 1.063 2.937 22 H -0.291 1.291 23 H -0.289 1.289 24 H -0.294 1.294 25 C 0.119 3.881 26 C 0.077 3.923 27 H 0.068 0.932 28 O -0.563 6.563 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.427 0.573 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.401 0.599 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.269 0.731 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.089 3.717 -3.208 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.705 3.295 4 O -0.944 6.944 5 O -0.942 6.942 6 N -0.861 5.861 7 C 0.024 3.976 8 H 0.124 0.876 9 C -0.229 4.229 10 C 0.292 3.708 11 O -0.403 6.403 12 N -0.360 5.360 13 C 0.036 3.964 14 H 0.122 0.878 15 C 0.003 3.997 16 N -0.326 5.326 17 C -0.473 4.473 18 H 0.089 0.911 19 C -0.223 4.223 20 N -0.547 5.547 21 Si 0.892 3.108 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.221 1.221 25 C -0.007 4.007 26 C 0.017 3.983 27 H 0.086 0.914 28 O -0.368 6.368 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.265 0.735 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.235 0.765 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -21.297 4.260 -2.740 21.891 hybrid contribution -0.651 -0.459 0.239 0.832 sum -21.949 3.801 -2.500 22.415 Atomic orbital electron populations 1.21503 0.90286 1.05220 1.03484 1.30541 1.07431 1.26537 1.12002 1.05010 0.72741 0.77267 0.74468 1.93621 1.82808 1.72999 1.44966 1.93611 1.83238 1.71912 1.45438 1.55481 1.25786 1.76992 1.27806 1.20627 0.94268 0.95492 0.87176 0.87591 1.22308 1.03532 0.98478 0.98536 1.20576 0.84048 0.79493 0.86708 1.90727 1.72010 1.61194 1.16380 1.45900 1.28289 1.51708 1.10147 1.22026 0.84895 0.90430 0.99000 0.87800 1.21659 0.86264 0.93772 0.98000 1.44432 1.04685 1.06929 1.76521 1.19745 0.82426 0.93938 1.51169 0.91142 1.25719 1.00400 0.94880 1.01336 1.70745 1.32642 1.25034 1.26242 0.83596 0.75487 0.74952 0.76766 1.21718 1.21599 1.22136 1.22136 0.89435 0.89360 0.99811 1.23357 0.93234 0.84824 0.96883 0.91405 1.86440 1.63297 1.21029 1.66073 0.90894 0.90871 0.89886 0.85139 0.84548 0.73542 0.91006 0.90681 0.89564 0.76477 0.94768 0.94781 0.91982 0.92261 0.94570 0.77326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.92 37.16 0.37 -0.44 16 2 C -0.64 -3.91 6.68 37.16 0.25 -3.66 16 3 S 2.61 23.52 5.38 -107.50 -0.58 22.95 16 4 O -0.95 -11.83 18.08 -57.54 -1.04 -12.87 16 5 O -0.95 -10.53 17.11 -57.54 -0.98 -11.51 16 6 N -1.10 -10.38 5.15 -5.88 -0.03 -10.41 16 7 C 0.14 1.23 3.09 -69.08 -0.21 1.02 16 8 H 0.11 0.61 7.15 -51.93 -0.37 0.24 16 9 C -0.17 -1.41 9.41 37.16 0.35 -1.06 16 10 C 0.51 6.50 7.22 -10.99 -0.08 6.42 16 11 O -0.53 -8.80 15.63 5.55 0.09 -8.71 16 12 N -0.71 -8.95 5.01 -52.03 -0.26 -9.21 16 13 C 0.14 2.39 3.04 -66.09 -0.20 2.19 16 14 H 0.10 1.99 7.55 -51.93 -0.39 1.60 16 15 C 0.13 2.66 7.01 -3.06 -0.02 2.63 16 16 N -0.60 -14.50 3.33 -170.07 -0.57 -15.07 16 17 C -0.35 -9.48 9.97 -15.06 -0.15 -9.63 16 18 H 0.07 1.95 8.02 -52.49 -0.42 1.53 16 19 C -0.02 -0.58 4.95 -17.43 -0.09 -0.66 16 20 N -0.91 -26.54 12.87 55.49 0.71 -25.82 16 21 Si 1.06 24.56 30.03 -169.99 -5.10 19.46 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.12 2.57 5.07 -2.53 -0.01 2.56 16 26 C 0.08 1.26 4.06 -24.58 -0.10 1.16 16 27 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 28 O -0.56 -8.31 13.47 -35.23 -0.47 -8.79 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.13 0.57 7.44 -51.92 -0.39 0.19 16 33 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.43 4.31 8.17 -34.47 -0.28 4.03 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.50 7.56 -51.93 -0.39 0.10 16 37 H 0.09 0.72 7.42 -51.93 -0.39 0.33 16 38 H 0.40 3.79 7.98 -40.82 -0.33 3.46 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 41 H 0.27 7.95 6.45 -40.82 -0.26 7.69 16 42 H 0.06 1.36 7.82 -51.93 -0.41 0.96 16 43 H 0.04 0.86 7.03 -51.93 -0.36 0.50 16 44 H 0.38 4.09 9.11 45.56 0.42 4.51 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -37.48 374.39 -8.23 -45.72 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.74 Total: 8.12 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 0.10 Total: 0.51 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.14 Total: -60.51 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -2.41 Total: -41.88 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.10 Total: 19.46 kcal Atomic # 16 Polarization: 23.52 SS G_CDS: -0.58 Total: 22.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.48 -8.23 -45.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193148250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.974 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds