Wall clock time and date at job start Tue Mar 31 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81395 * 109.47220 * 2 1 4 4 O 1.42100 * 110.54420 * 68.37857 * 3 2 1 5 5 O 1.42103 * 110.54296 * 291.62444 * 3 2 1 6 6 N 1.65600 * 104.45022 * 180.02562 * 3 2 1 7 7 C 1.46507 * 119.99564 * 64.99859 * 6 3 2 8 8 H 1.08991 * 109.47384 * 335.00185 * 7 6 3 9 9 C 1.53005 * 109.46788 * 95.00363 * 7 6 3 10 10 C 1.50700 * 109.47022 * 214.99737 * 7 6 3 11 11 O 1.21283 * 120.00036 * 0.02562 * 10 7 6 12 12 N 1.34768 * 120.00074 * 180.02562 * 10 7 6 13 13 C 1.46503 * 120.00219 * 180.02562 * 12 10 7 14 14 H 1.08995 * 110.63935 * 31.86261 * 13 12 10 15 15 C 1.54327 * 111.00269 * 268.78467 * 13 12 10 16 16 N 1.47029 * 107.26766 * 219.60190 * 15 13 12 17 17 C 1.36939 * 125.65021 * 178.84914 * 16 15 13 18 18 H 1.07997 * 119.99773 * 347.79313 * 17 16 15 19 19 C 1.38811 * 119.99509 * 167.78740 * 17 16 15 20 20 N 1.31613 * 120.00608 * 325.97825 * 19 17 16 21 21 Si 1.86806 * 119.99274 * 145.97884 * 19 17 16 22 22 H 1.48495 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47063 * 239.99759 * 21 19 17 24 24 H 1.48501 * 109.46672 * 120.00021 * 21 19 17 25 25 C 1.47428 * 108.69861 * 358.58470 * 16 15 13 26 26 C 1.54903 * 104.83505 * 24.35538 * 25 16 15 27 27 H 1.09001 * 111.00122 * 81.06209 * 26 25 16 28 28 O 1.42894 * 111.00994 * 204.91546 * 26 25 16 29 29 H 1.09004 * 109.46667 * 299.99938 * 1 2 3 30 30 H 1.09003 * 109.47396 * 59.99350 * 1 2 3 31 31 H 1.09002 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46667 * 240.00062 * 2 1 3 33 33 H 1.08998 * 109.46939 * 120.00555 * 2 1 3 34 34 H 0.96997 * 120.00480 * 245.00695 * 6 3 2 35 35 H 1.09007 * 109.46953 * 59.99882 * 9 7 6 36 36 H 1.08999 * 109.46636 * 179.97438 * 9 7 6 37 37 H 1.09002 * 109.46881 * 299.99768 * 9 7 6 38 38 H 0.96997 * 120.00307 * 0.02562 * 12 10 7 39 39 H 1.09003 * 109.99553 * 100.12694 * 15 13 12 40 40 H 1.09003 * 109.78069 * 338.95243 * 15 13 12 41 41 H 0.96997 * 119.99747 * 354.25193 * 20 19 17 42 42 H 1.08994 * 110.36433 * 143.19827 * 25 16 15 43 43 H 1.09003 * 110.36298 * 265.51907 * 25 16 15 44 44 H 0.96704 * 114.00068 * 298.55417 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4666 0.9671 -1.1510 8 1 3.7805 0.3013 -1.6745 9 6 4.9287 2.0733 -2.1017 10 6 5.6618 0.1829 -0.6742 11 8 5.9183 0.1286 0.5100 12 7 6.4458 -0.4580 -1.5635 13 6 7.6074 -1.2208 -1.0999 14 1 7.4196 -1.6454 -0.1138 15 6 8.8744 -0.3399 -1.0772 16 7 9.9911 -1.1691 -1.5539 17 6 11.2869 -0.7526 -1.7044 18 1 11.5248 0.2998 -1.6571 19 6 12.2946 -1.6832 -1.9176 20 7 12.2247 -2.8700 -1.3529 21 14 13.7499 -1.2510 -3.0061 22 1 13.5913 0.1340 -3.5176 23 1 13.8109 -2.1965 -4.1495 24 1 15.0041 -1.3472 -2.2168 25 6 9.4859 -2.5248 -1.8370 26 6 7.9741 -2.3345 -2.1162 27 1 7.8050 -2.0003 -3.1398 28 8 7.2479 -3.5348 -1.8448 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.2989 1.8762 0.7604 35 1 5.6148 2.7391 -1.5781 36 1 5.4366 1.6283 -2.9573 37 1 4.0641 2.6406 -2.4466 38 1 6.2409 -0.4143 -2.5106 39 1 9.0732 0.0009 -0.0611 40 1 8.7402 0.5164 -1.7381 41 1 11.5141 -3.0660 -0.7224 42 1 9.9841 -2.9401 -2.7129 43 1 9.6334 -3.1727 -0.9729 44 1 7.5135 -4.2873 -2.3912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193148250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:40 Heat of formation + Delta-G solvation = -165.241807 kcal Electronic energy + Delta-G solvation = -27806.272476 eV Core-core repulsion = 23692.264176 eV Total energy + Delta-G solvation = -4114.008300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35835 -39.72825 -38.24708 -37.10075 -36.86073 -36.52701 -35.78392 -34.05566 -33.78578 -31.16797 -29.94836 -28.90969 -26.35020 -25.14692 -24.97482 -22.59068 -22.13636 -21.46558 -20.44546 -19.69572 -19.30165 -18.49913 -18.27324 -17.40480 -17.31553 -17.06243 -16.43546 -16.32524 -15.88493 -15.77675 -15.38316 -15.25330 -15.03650 -14.75316 -14.44084 -14.21059 -14.05453 -13.99785 -13.55833 -13.43269 -13.33224 -13.27657 -13.21780 -13.13071 -12.84175 -12.71392 -12.65094 -12.51675 -12.40184 -11.87040 -11.84487 -11.73002 -11.71939 -11.24393 -10.99554 -10.58014 -10.52310 -10.24259 -9.13909 -8.44145 -5.35539 -0.79287 1.43741 1.51419 1.59656 1.65408 1.83975 2.01013 2.59432 2.76064 2.90549 3.10827 3.16490 3.37695 3.46323 3.67485 3.73128 3.76036 3.90769 3.93799 3.97555 4.00818 4.23734 4.28351 4.38107 4.41541 4.70306 4.73928 4.80525 4.83583 4.84408 4.89262 4.96900 5.04162 5.11192 5.29042 5.33739 5.60970 5.84664 6.22393 6.42713 6.73554 6.79351 7.10487 7.62487 8.16638 8.89095 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.002504 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.370532 B =11177.462046 C =11675.517216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.618 4.618 3 S 2.619 3.381 4 O -0.995 6.995 5 O -0.975 6.975 6 N -1.107 6.107 7 C 0.139 3.861 8 H 0.149 0.851 9 C -0.171 4.171 10 C 0.509 3.491 11 O -0.570 6.570 12 N -0.695 5.695 13 C 0.157 3.843 14 H 0.079 0.921 15 C 0.129 3.871 16 N -0.617 5.617 17 C -0.356 4.356 18 H 0.062 0.938 19 C -0.071 4.071 20 N -0.933 5.933 21 Si 1.117 2.883 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.294 1.294 25 C 0.121 3.879 26 C 0.105 3.895 27 H 0.102 0.898 28 O -0.564 6.564 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.422 0.578 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.421 0.579 39 H 0.005 0.995 40 H 0.048 0.952 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.006 0.994 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.826 3.315 -5.591 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.751 4.751 3 S 2.715 3.285 4 O -0.986 6.986 5 O -0.965 6.965 6 N -0.865 5.865 7 C 0.028 3.972 8 H 0.167 0.833 9 C -0.230 4.230 10 C 0.294 3.706 11 O -0.448 6.448 12 N -0.348 5.348 13 C 0.050 3.950 14 H 0.097 0.903 15 C 0.003 3.997 16 N -0.346 5.346 17 C -0.484 4.484 18 H 0.080 0.920 19 C -0.268 4.268 20 N -0.574 5.574 21 Si 0.941 3.059 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.222 1.222 25 C -0.006 4.006 26 C 0.045 3.955 27 H 0.120 0.880 28 O -0.372 6.372 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.176 0.824 33 H 0.163 0.837 34 H 0.258 0.742 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.259 0.741 39 H 0.023 0.977 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.023 0.977 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -23.070 3.898 -5.166 23.960 hybrid contribution -0.165 -0.360 1.057 1.129 sum -23.234 3.538 -4.109 23.859 Atomic orbital electron populations 1.21688 0.89679 1.06520 1.03905 1.30390 1.07907 1.22905 1.13887 1.04723 0.72221 0.78469 0.73080 1.93565 1.83291 1.75163 1.46563 1.93574 1.83399 1.73725 1.45824 1.55493 1.25919 1.77217 1.27877 1.20823 0.93357 0.95867 0.87151 0.83326 1.22359 1.03580 0.98149 0.98893 1.21271 0.84544 0.78773 0.85994 1.90722 1.73149 1.62523 1.18428 1.45656 1.26729 1.51057 1.11364 1.21488 0.84789 0.90308 0.98409 0.90294 1.21733 0.87086 0.94521 0.96365 1.44681 1.04669 1.08425 1.76782 1.19983 0.84201 0.93682 1.50530 0.92013 1.27116 1.03154 0.94525 1.01987 1.70875 1.32853 1.26212 1.27498 0.82874 0.72239 0.75757 0.75068 1.19734 1.20775 1.22175 1.22111 0.93265 0.87529 0.97673 1.23018 0.89118 0.85331 0.98075 0.88034 1.86412 1.62403 1.21318 1.67039 0.91133 0.90118 0.88044 0.82379 0.83668 0.74188 0.92452 0.88417 0.89280 0.74056 0.97695 0.93400 0.93662 0.94025 0.97659 0.75000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.92 71.98 0.71 -0.61 16 2 C -0.62 -5.68 6.68 71.98 0.48 -5.20 16 3 S 2.62 43.73 5.38 -56.49 -0.30 43.42 16 4 O -1.00 -24.80 18.08 -127.65 -2.31 -27.11 16 5 O -0.98 -20.02 17.11 -127.65 -2.18 -22.20 16 6 N -1.11 -19.52 5.15 -172.51 -0.89 -20.41 16 7 C 0.14 2.14 3.09 44.25 0.14 2.28 16 8 H 0.15 1.01 7.15 -2.39 -0.02 0.99 16 9 C -0.17 -2.41 9.41 71.98 0.68 -1.73 16 10 C 0.51 12.05 7.22 87.66 0.63 12.68 16 11 O -0.57 -18.86 15.63 -3.04 -0.05 -18.91 16 12 N -0.70 -15.72 5.01 -436.91 -2.19 -17.91 16 13 C 0.16 5.14 3.04 46.18 0.14 5.28 16 14 H 0.08 3.04 7.55 -2.39 -0.02 3.03 16 15 C 0.13 5.34 7.01 86.73 0.61 5.94 16 16 N -0.62 -30.48 3.33 -691.97 -2.30 -32.78 16 17 C -0.36 -19.84 9.97 84.03 0.84 -19.01 16 18 H 0.06 3.47 8.02 -2.91 -0.02 3.44 16 19 C -0.07 -3.97 4.95 84.86 0.42 -3.55 16 20 N -0.93 -55.97 12.87 21.65 0.28 -55.69 16 21 Si 1.12 49.58 30.03 68.60 2.06 51.64 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 25 C 0.12 5.27 5.07 86.85 0.44 5.71 16 26 C 0.11 3.22 4.06 31.99 0.13 3.35 16 27 H 0.10 2.52 8.01 -2.39 -0.02 2.50 16 28 O -0.56 -15.18 13.47 -148.98 -2.01 -17.19 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.16 0.62 7.44 -2.39 -0.02 0.60 16 33 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.42 8.55 8.17 -96.75 -0.79 7.76 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.10 0.92 7.56 -2.39 -0.02 0.90 16 37 H 0.09 1.27 7.42 -2.39 -0.02 1.25 16 38 H 0.42 6.15 7.98 -92.71 -0.74 5.41 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 41 H 0.25 15.63 6.45 -92.71 -0.60 15.04 16 42 H 0.04 1.94 7.82 -2.39 -0.02 1.92 16 43 H 0.01 0.28 7.03 -2.39 -0.02 0.26 16 44 H 0.40 7.48 9.11 -74.05 -0.67 6.80 16 Total: -1.00 -84.75 374.39 -5.66 -90.41 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.99 Total: 21.58 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.22 Total: 5.15 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -5.10 Total: -126.79 kcal Atomic # 8 Polarization: -78.86 SS G_CDS: -6.55 Total: -85.41 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.06 Total: 51.64 kcal Atomic # 16 Polarization: 43.73 SS G_CDS: -0.30 Total: 43.42 kcal Total: -84.75 -5.66 -90.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193148250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.837 kcal (2) G-P(sol) polarization free energy of solvation -84.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds