Wall clock time and date at job start Tue Mar 31 2020 18:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81406 * 109.46759 * 2 1 4 4 O 1.42095 * 110.54249 * 68.37590 * 3 2 1 5 5 O 1.42090 * 110.53971 * 291.62301 * 3 2 1 6 6 N 1.65600 * 104.44593 * 179.97438 * 3 2 1 7 7 C 1.46495 * 120.00297 * 64.99904 * 6 3 2 8 8 H 1.09009 * 109.46872 * 24.99753 * 7 6 3 9 9 C 1.52994 * 109.47234 * 265.00135 * 7 6 3 10 10 C 1.50702 * 109.47285 * 144.99400 * 7 6 3 11 11 O 1.21281 * 119.99701 * 0.02562 * 10 7 6 12 12 N 1.34770 * 120.00062 * 179.97438 * 10 7 6 13 13 C 1.46501 * 120.00262 * 180.02562 * 12 10 7 14 14 H 1.08998 * 110.63797 * 31.85733 * 13 12 10 15 15 C 1.54332 * 111.00316 * 268.78160 * 13 12 10 16 16 N 1.47014 * 107.27010 * 219.59651 * 15 13 12 17 17 C 1.36935 * 125.65047 * 178.84389 * 16 15 13 18 18 H 1.07998 * 120.00005 * 343.74835 * 17 16 15 19 19 C 1.38816 * 120.00086 * 163.74331 * 17 16 15 20 20 N 1.31615 * 120.00581 * 156.78063 * 19 17 16 21 21 Si 1.86806 * 119.99844 * 336.77615 * 19 17 16 22 22 H 1.48506 * 109.46949 * 89.99744 * 21 19 17 23 23 H 1.48507 * 109.47164 * 330.00313 * 21 19 17 24 24 H 1.48492 * 109.47394 * 209.99855 * 21 19 17 25 25 C 1.47424 * 108.70078 * 358.58905 * 16 15 13 26 26 C 1.54903 * 104.83619 * 24.35319 * 25 16 15 27 27 H 1.09006 * 111.00518 * 81.06215 * 26 25 16 28 28 O 1.42897 * 111.00990 * 204.88017 * 26 25 16 29 29 H 1.08994 * 109.47138 * 60.00269 * 1 2 3 30 30 H 1.09003 * 109.46757 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47250 * 299.99588 * 1 2 3 32 32 H 1.08995 * 109.47190 * 240.00119 * 2 1 3 33 33 H 1.09001 * 109.46799 * 119.99511 * 2 1 3 34 34 H 0.96998 * 119.99668 * 244.99994 * 6 3 2 35 35 H 1.09010 * 109.47217 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.47326 * 299.99310 * 9 7 6 37 37 H 1.08998 * 109.47742 * 59.99820 * 9 7 6 38 38 H 0.97003 * 120.00131 * 0.02562 * 12 10 7 39 39 H 1.09008 * 109.98749 * 100.12264 * 15 13 12 40 40 H 1.09002 * 109.77886 * 338.96157 * 15 13 12 41 41 H 0.97001 * 119.99135 * 4.51902 * 20 19 17 42 42 H 1.09007 * 110.36977 * 143.19237 * 25 16 15 43 43 H 1.09004 * 110.36877 * 265.51126 * 25 16 15 44 44 H 0.96694 * 113.99919 * 298.54380 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3438 -1.2369 6 7 3.7843 1.5654 0.0007 7 6 4.4675 0.9670 -1.1487 8 1 3.8509 1.0851 -2.0398 9 6 4.7019 -0.5216 -0.8844 10 6 5.7919 1.6545 -1.3596 11 8 6.1318 2.5552 -0.6220 12 7 6.5991 1.2676 -2.3671 13 6 7.8868 1.9355 -2.5718 14 1 8.3019 2.2694 -1.6209 15 6 7.7451 3.1232 -3.5470 16 7 8.9347 3.1231 -4.4108 17 6 9.1830 4.0064 -5.4273 18 1 8.3814 4.6111 -5.8251 19 6 10.4650 4.1247 -5.9464 20 7 10.6413 4.5890 -7.1653 21 14 11.9401 3.6252 -4.9148 22 1 12.2453 2.1909 -5.1495 23 1 11.6335 3.8371 -3.4773 24 1 13.1140 4.4501 -5.2975 25 6 9.8189 2.0183 -3.9974 26 6 8.8813 0.9975 -3.3058 27 1 8.3656 0.3800 -4.0412 28 8 9.6031 0.1869 -2.3763 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.2981 1.8767 0.7622 35 1 5.2108 -0.9668 -1.7395 36 1 5.3185 -0.6398 0.0066 37 1 3.7440 -1.0189 -0.7319 38 1 6.3274 0.5468 -2.9568 39 1 7.6917 4.0586 -2.9897 40 1 6.8472 2.9984 -4.1523 41 1 9.8819 4.9097 -7.6765 42 1 10.2947 1.5670 -4.8682 43 1 10.5722 2.3773 -3.2961 44 1 10.3031 -0.3449 -2.7790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193148251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:45 Heat of formation + Delta-G solvation = -125.313533 kcal Electronic energy + Delta-G solvation = -27833.230873 eV Core-core repulsion = 23720.953993 eV Total energy + Delta-G solvation = -4112.276880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.22862 -38.40723 -37.43110 -36.28187 -35.83152 -35.40060 -34.36525 -33.67629 -32.11328 -30.41395 -28.62507 -27.70651 -25.18064 -24.36635 -23.54715 -21.32163 -20.76602 -20.12392 -19.76653 -18.56665 -17.80188 -17.41077 -17.27491 -16.67871 -16.28860 -16.17458 -15.56839 -15.26553 -14.79893 -14.53646 -14.26488 -13.93480 -13.86174 -13.71036 -13.53364 -13.30117 -13.19307 -12.83722 -12.69621 -12.42886 -12.41704 -12.36420 -12.27077 -12.10401 -12.02642 -11.94213 -11.63718 -11.18220 -11.05346 -10.78480 -10.30544 -10.23090 -10.07528 -9.75837 -9.48814 -9.31066 -9.07096 -8.57620 -7.18048 -6.38738 -3.31936 -0.15574 2.26399 2.49791 3.01930 3.32739 3.41449 3.49239 3.62306 3.76563 4.06460 4.14627 4.22056 4.34571 4.47592 4.52005 4.61427 4.64868 4.80529 4.89174 5.01504 5.08644 5.14588 5.19831 5.24662 5.27291 5.39509 5.41856 5.48805 5.61538 5.76168 5.79069 6.20375 6.29340 6.41651 6.55419 6.63407 6.68408 7.41665 7.60259 7.73102 8.11388 8.27154 8.95133 9.47807 10.14162 11.08194 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.002629 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.828579 B =10645.920260 C =11144.408274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.612 3.388 4 O -0.952 6.952 5 O -0.951 6.951 6 N -1.101 6.101 7 C 0.127 3.873 8 H 0.119 0.881 9 C -0.175 4.175 10 C 0.515 3.485 11 O -0.525 6.525 12 N -0.710 5.710 13 C 0.141 3.859 14 H 0.107 0.893 15 C 0.126 3.874 16 N -0.602 5.602 17 C -0.329 4.329 18 H 0.077 0.923 19 C -0.018 4.018 20 N -0.918 5.918 21 Si 1.064 2.936 22 H -0.294 1.294 23 H -0.285 1.285 24 H -0.296 1.296 25 C 0.080 3.920 26 C 0.083 3.917 27 H 0.072 0.928 28 O -0.562 6.562 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.427 0.573 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.264 0.736 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 -17.661 13.797 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.703 3.297 4 O -0.943 6.943 5 O -0.941 6.941 6 N -0.861 5.861 7 C 0.015 3.985 8 H 0.137 0.863 9 C -0.234 4.234 10 C 0.299 3.701 11 O -0.400 6.400 12 N -0.362 5.362 13 C 0.036 3.964 14 H 0.124 0.876 15 C -0.001 4.001 16 N -0.331 5.331 17 C -0.456 4.456 18 H 0.095 0.905 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.896 3.104 22 H -0.222 1.222 23 H -0.212 1.212 24 H -0.224 1.224 25 C -0.047 4.047 26 C 0.023 3.977 27 H 0.090 0.910 28 O -0.367 6.367 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -15.644 -16.039 14.506 26.691 hybrid contribution -0.974 -1.000 -0.406 1.454 sum -16.618 -17.039 14.100 27.664 Atomic orbital electron populations 1.21511 0.90308 1.05147 1.03641 1.30656 1.07490 1.26494 1.11787 1.05058 0.72859 0.77222 0.74541 1.93621 1.82837 1.72775 1.45041 1.93630 1.83149 1.71740 1.45537 1.55411 1.25713 1.77504 1.27446 1.20702 0.94069 0.93286 0.90457 0.86327 1.22426 1.03504 0.93091 1.04353 1.20356 0.85511 0.83496 0.80786 1.90730 1.74052 1.29595 1.45617 1.45864 1.19679 1.38516 1.32119 1.22033 0.81417 0.92362 1.00581 0.87552 1.21731 0.91966 0.95182 0.91203 1.44611 1.19617 1.31991 1.36880 1.20066 0.96074 1.19826 1.09640 0.90482 1.25969 0.98663 0.99621 0.97642 1.70908 1.34579 1.43287 1.07070 0.83849 0.75932 0.75421 0.75239 1.22210 1.21174 1.22411 1.22682 0.94306 0.89449 0.98239 1.23275 0.93047 0.91252 0.90148 0.90988 1.86458 1.52128 1.60838 1.37246 0.90804 0.89914 0.90894 0.84833 0.84667 0.73609 0.90158 0.90626 0.91087 0.76509 0.94156 0.94473 0.92575 0.91593 0.93873 0.77331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.92 37.16 0.37 -0.29 16 2 C -0.64 -2.79 5.94 37.16 0.22 -2.56 16 3 S 2.61 23.47 5.44 -107.50 -0.58 22.88 16 4 O -0.95 -11.75 18.08 -57.54 -1.04 -12.79 16 5 O -0.95 -12.04 17.39 -57.54 -1.00 -13.04 16 6 N -1.10 -10.05 5.15 -5.88 -0.03 -10.08 16 7 C 0.13 1.09 3.22 -69.09 -0.22 0.87 16 8 H 0.12 0.86 7.48 -51.92 -0.39 0.47 16 9 C -0.17 -0.89 9.38 37.15 0.35 -0.54 16 10 C 0.52 6.77 7.22 -10.99 -0.08 6.69 16 11 O -0.52 -9.12 15.63 5.56 0.09 -9.03 16 12 N -0.71 -8.94 5.01 -52.02 -0.26 -9.20 16 13 C 0.14 2.35 3.04 -66.09 -0.20 2.15 16 14 H 0.11 1.98 7.55 -51.93 -0.39 1.59 16 15 C 0.13 2.59 7.01 -3.06 -0.02 2.56 16 16 N -0.60 -14.45 3.23 -170.07 -0.55 -15.00 16 17 C -0.33 -9.29 10.44 -15.06 -0.16 -9.45 16 18 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 19 C -0.02 -0.52 5.43 -17.43 -0.09 -0.61 16 20 N -0.92 -28.28 13.70 55.49 0.76 -27.52 16 21 Si 1.06 26.08 24.70 -169.99 -4.20 21.89 16 22 H -0.29 -6.61 6.70 56.52 0.38 -6.24 16 23 H -0.28 -6.77 6.25 56.52 0.35 -6.41 16 24 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 25 C 0.08 1.63 4.43 -2.53 -0.01 1.62 16 26 C 0.08 1.30 4.06 -24.58 -0.10 1.20 16 27 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 28 O -0.56 -7.73 13.47 -35.23 -0.47 -8.21 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.32 6.78 -51.93 -0.35 -0.03 16 33 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.43 4.10 8.17 -34.47 -0.28 3.82 16 35 H 0.08 0.32 7.56 -51.92 -0.39 -0.08 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.18 5.78 -51.93 -0.30 -0.12 16 38 H 0.40 3.66 7.98 -40.82 -0.33 3.33 16 39 H 0.04 0.90 8.14 -51.92 -0.42 0.47 16 40 H 0.04 0.75 8.03 -51.93 -0.42 0.33 16 41 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16 42 H 0.07 1.38 6.52 -51.93 -0.34 1.04 16 43 H 0.04 0.93 5.46 -51.93 -0.28 0.65 16 44 H 0.38 3.63 9.11 45.56 0.42 4.04 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -39.99 366.02 -7.38 -47.37 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.66 Total: 5.58 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 0.05 Total: 1.63 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.08 Total: -61.79 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.43 Total: -43.07 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.20 Total: 21.89 kcal Atomic # 16 Polarization: 23.47 SS G_CDS: -0.58 Total: 22.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.99 -7.38 -47.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193148251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.947 kcal (2) G-P(sol) polarization free energy of solvation -39.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds