Wall clock time and date at job start Tue Mar 31 2020 18:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81406 * 109.46759 * 2 1 4 4 O 1.42095 * 110.54249 * 68.37590 * 3 2 1 5 5 O 1.42090 * 110.53971 * 291.62301 * 3 2 1 6 6 N 1.65600 * 104.44593 * 179.97438 * 3 2 1 7 7 C 1.46495 * 120.00297 * 64.99904 * 6 3 2 8 8 H 1.09009 * 109.46872 * 24.99753 * 7 6 3 9 9 C 1.52994 * 109.47234 * 265.00135 * 7 6 3 10 10 C 1.50702 * 109.47285 * 144.99400 * 7 6 3 11 11 O 1.21281 * 119.99701 * 0.02562 * 10 7 6 12 12 N 1.34770 * 120.00062 * 179.97438 * 10 7 6 13 13 C 1.46501 * 120.00262 * 180.02562 * 12 10 7 14 14 H 1.08998 * 110.63797 * 31.85733 * 13 12 10 15 15 C 1.54332 * 111.00316 * 268.78160 * 13 12 10 16 16 N 1.47014 * 107.27010 * 219.59651 * 15 13 12 17 17 C 1.36935 * 125.65047 * 178.84389 * 16 15 13 18 18 H 1.07998 * 120.00005 * 343.74835 * 17 16 15 19 19 C 1.38816 * 120.00086 * 163.74331 * 17 16 15 20 20 N 1.31615 * 120.00581 * 156.78063 * 19 17 16 21 21 Si 1.86806 * 119.99844 * 336.77615 * 19 17 16 22 22 H 1.48506 * 109.46949 * 89.99744 * 21 19 17 23 23 H 1.48507 * 109.47164 * 330.00313 * 21 19 17 24 24 H 1.48492 * 109.47394 * 209.99855 * 21 19 17 25 25 C 1.47424 * 108.70078 * 358.58905 * 16 15 13 26 26 C 1.54903 * 104.83619 * 24.35319 * 25 16 15 27 27 H 1.09006 * 111.00518 * 81.06215 * 26 25 16 28 28 O 1.42897 * 111.00990 * 204.88017 * 26 25 16 29 29 H 1.08994 * 109.47138 * 60.00269 * 1 2 3 30 30 H 1.09003 * 109.46757 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47250 * 299.99588 * 1 2 3 32 32 H 1.08995 * 109.47190 * 240.00119 * 2 1 3 33 33 H 1.09001 * 109.46799 * 119.99511 * 2 1 3 34 34 H 0.96998 * 119.99668 * 244.99994 * 6 3 2 35 35 H 1.09010 * 109.47217 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.47326 * 299.99310 * 9 7 6 37 37 H 1.08998 * 109.47742 * 59.99820 * 9 7 6 38 38 H 0.97003 * 120.00131 * 0.02562 * 12 10 7 39 39 H 1.09008 * 109.98749 * 100.12264 * 15 13 12 40 40 H 1.09002 * 109.77886 * 338.96157 * 15 13 12 41 41 H 0.97001 * 119.99135 * 4.51902 * 20 19 17 42 42 H 1.09007 * 110.36977 * 143.19237 * 25 16 15 43 43 H 1.09004 * 110.36877 * 265.51126 * 25 16 15 44 44 H 0.96694 * 113.99919 * 298.54380 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8385 2.3438 -1.2369 6 7 3.7843 1.5654 0.0007 7 6 4.4675 0.9670 -1.1487 8 1 3.8509 1.0851 -2.0398 9 6 4.7019 -0.5216 -0.8844 10 6 5.7919 1.6545 -1.3596 11 8 6.1318 2.5552 -0.6220 12 7 6.5991 1.2676 -2.3671 13 6 7.8868 1.9355 -2.5718 14 1 8.3019 2.2694 -1.6209 15 6 7.7451 3.1232 -3.5470 16 7 8.9347 3.1231 -4.4108 17 6 9.1830 4.0064 -5.4273 18 1 8.3814 4.6111 -5.8251 19 6 10.4650 4.1247 -5.9464 20 7 10.6413 4.5890 -7.1653 21 14 11.9401 3.6252 -4.9148 22 1 12.2453 2.1909 -5.1495 23 1 11.6335 3.8371 -3.4773 24 1 13.1140 4.4501 -5.2975 25 6 9.8189 2.0183 -3.9974 26 6 8.8813 0.9975 -3.3058 27 1 8.3656 0.3800 -4.0412 28 8 9.6031 0.1869 -2.3763 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.2981 1.8767 0.7622 35 1 5.2108 -0.9668 -1.7395 36 1 5.3185 -0.6398 0.0066 37 1 3.7440 -1.0189 -0.7319 38 1 6.3274 0.5468 -2.9568 39 1 7.6917 4.0586 -2.9897 40 1 6.8472 2.9984 -4.1523 41 1 9.8819 4.9097 -7.6765 42 1 10.2947 1.5670 -4.8682 43 1 10.5722 2.3773 -3.2961 44 1 10.3031 -0.3449 -2.7790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193148251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:44 Heat of formation + Delta-G solvation = -164.601081 kcal Electronic energy + Delta-G solvation = -27834.934509 eV Core-core repulsion = 23720.953993 eV Total energy + Delta-G solvation = -4113.980516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34798 -39.75598 -38.24813 -37.08747 -36.81957 -36.57487 -35.72870 -34.07989 -34.03923 -31.31242 -30.02792 -29.21442 -26.26373 -25.25000 -24.53812 -22.90666 -21.96962 -21.50338 -20.44958 -19.76819 -19.27740 -18.52932 -18.39434 -17.63554 -17.19068 -17.16163 -16.43562 -16.42646 -15.95047 -15.76263 -15.44766 -15.32601 -15.07031 -14.73809 -14.48783 -14.26794 -14.09693 -14.03662 -13.63918 -13.54138 -13.32581 -13.27166 -13.24448 -13.16909 -12.95413 -12.85553 -12.60668 -12.54629 -12.33865 -11.83850 -11.66107 -11.59265 -11.43853 -11.20834 -10.98493 -10.68770 -10.54486 -10.23860 -9.24080 -8.67088 -5.54702 -0.79387 1.36241 1.47958 1.53742 1.56934 1.69073 2.02007 2.47289 2.80696 2.82573 3.09337 3.19152 3.35099 3.42799 3.61995 3.72523 3.86046 3.91713 3.93081 3.98410 4.07297 4.23614 4.30374 4.41409 4.41978 4.67366 4.70575 4.78333 4.78468 4.85755 4.91291 4.92078 5.00844 5.15790 5.30255 5.34581 5.52547 5.89363 6.04894 6.44492 6.74470 6.84105 7.12682 7.36170 8.02292 8.79210 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.002629 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.828579 B =10645.920260 C =11144.408274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.599 4.599 3 S 2.603 3.397 4 O -0.998 6.998 5 O -1.000 7.000 6 N -1.107 6.107 7 C 0.129 3.871 8 H 0.135 0.865 9 C -0.172 4.172 10 C 0.507 3.493 11 O -0.575 6.575 12 N -0.696 5.696 13 C 0.153 3.847 14 H 0.086 0.914 15 C 0.124 3.876 16 N -0.621 5.621 17 C -0.324 4.324 18 H 0.041 0.959 19 C -0.070 4.070 20 N -0.951 5.951 21 Si 1.105 2.895 22 H -0.255 1.255 23 H -0.278 1.278 24 H -0.305 1.305 25 C 0.068 3.932 26 C 0.111 3.889 27 H 0.105 0.895 28 O -0.560 6.560 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.422 0.578 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.421 0.579 39 H 0.011 0.989 40 H 0.040 0.960 41 H 0.249 0.751 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.118 -22.561 14.971 32.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.734 4.734 3 S 2.701 3.299 4 O -0.988 6.988 5 O -0.990 6.990 6 N -0.865 5.865 7 C 0.018 3.982 8 H 0.153 0.847 9 C -0.231 4.231 10 C 0.293 3.707 11 O -0.453 6.453 12 N -0.349 5.349 13 C 0.047 3.953 14 H 0.104 0.896 15 C -0.002 4.002 16 N -0.349 5.349 17 C -0.452 4.452 18 H 0.059 0.941 19 C -0.265 4.265 20 N -0.593 5.593 21 Si 0.931 3.069 22 H -0.180 1.180 23 H -0.204 1.204 24 H -0.233 1.233 25 C -0.057 4.057 26 C 0.050 3.950 27 H 0.122 0.878 28 O -0.368 6.368 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.087 0.913 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.258 0.742 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.260 0.740 39 H 0.029 0.971 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.236 -20.971 15.671 30.805 hybrid contribution -0.929 0.535 -0.745 1.306 sum -17.165 -20.436 14.926 30.579 Atomic orbital electron populations 1.21716 0.90127 1.06768 1.03515 1.30385 1.07360 1.20604 1.15005 1.05112 0.72547 0.79506 0.72721 1.93556 1.83322 1.75603 1.46350 1.93563 1.83663 1.74834 1.46899 1.55368 1.25674 1.78118 1.27378 1.20934 0.91184 0.95084 0.91032 0.84715 1.22505 1.05652 0.89912 1.04999 1.21318 0.86793 0.82797 0.79771 1.90714 1.75396 1.31861 1.47368 1.45649 1.18222 1.38556 1.32491 1.21551 0.83791 0.91653 0.98351 0.89618 1.21779 0.90872 0.96174 0.91393 1.44632 1.21172 1.32543 1.36599 1.19923 0.95177 1.19826 1.10290 0.94138 1.27226 1.01589 0.99905 0.97772 1.71017 1.33982 1.45839 1.08484 0.83316 0.72367 0.77362 0.73897 1.17962 1.20399 1.23326 1.22881 0.94840 0.89532 0.98451 1.22926 0.91497 0.90481 0.90100 0.87768 1.86437 1.52963 1.60519 1.36930 0.91119 0.87181 0.91275 0.81530 0.81602 0.74169 0.88284 0.91082 0.87696 0.74020 0.97062 0.94213 0.94117 0.91603 0.94465 0.74692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.92 71.98 0.71 -0.19 16 2 C -0.60 -2.71 5.94 71.98 0.43 -2.28 16 3 S 2.60 44.63 5.44 -56.49 -0.31 44.33 16 4 O -1.00 -25.20 18.08 -127.65 -2.31 -27.51 16 5 O -1.00 -25.46 17.39 -127.65 -2.22 -27.68 16 6 N -1.11 -19.06 5.15 -172.53 -0.89 -19.95 16 7 C 0.13 1.91 3.22 44.24 0.14 2.05 16 8 H 0.14 1.57 7.48 -2.38 -0.02 1.55 16 9 C -0.17 -0.94 9.38 71.98 0.67 -0.27 16 10 C 0.51 12.75 7.22 87.66 0.63 13.38 16 11 O -0.58 -20.35 15.63 -3.03 -0.05 -20.40 16 12 N -0.70 -15.95 5.01 -436.90 -2.19 -18.14 16 13 C 0.15 4.90 3.04 46.18 0.14 5.04 16 14 H 0.09 3.16 7.55 -2.39 -0.02 3.14 16 15 C 0.12 5.19 7.01 86.73 0.61 5.80 16 16 N -0.62 -29.93 3.23 -691.98 -2.24 -32.17 16 17 C -0.32 -18.88 10.44 84.03 0.88 -18.00 16 18 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 19 C -0.07 -4.15 5.43 84.86 0.46 -3.69 16 20 N -0.95 -60.32 13.70 21.65 0.30 -60.02 16 21 Si 1.11 52.42 24.70 68.60 1.69 54.12 16 22 H -0.25 -10.39 6.70 99.48 0.67 -9.72 16 23 H -0.28 -12.69 6.25 99.48 0.62 -12.07 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 25 C 0.07 2.66 4.43 86.85 0.39 3.04 16 26 C 0.11 3.08 4.06 31.99 0.13 3.21 16 27 H 0.10 2.32 8.01 -2.38 -0.02 2.30 16 28 O -0.56 -12.96 13.47 -148.98 -2.01 -14.97 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.17 -0.23 6.78 -2.39 -0.02 -0.25 16 33 H 0.17 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.42 8.18 8.17 -96.75 -0.79 7.39 16 35 H 0.10 0.22 7.56 -2.38 -0.02 0.20 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 -0.12 5.78 -2.39 -0.01 -0.14 16 38 H 0.42 6.04 7.98 -92.71 -0.74 5.30 16 39 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.04 1.62 8.03 -2.39 -0.02 1.60 16 41 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 42 H 0.07 2.57 6.52 -2.38 -0.02 2.55 16 43 H 0.04 1.52 5.46 -2.39 -0.01 1.51 16 44 H 0.40 5.62 9.11 -74.06 -0.67 4.94 16 Total: -1.00 -94.16 366.02 -6.33 -100.49 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -1.31 Total: 13.81 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.19 Total: 8.09 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -5.02 Total: -130.28 kcal Atomic # 8 Polarization: -83.97 SS G_CDS: -6.58 Total: -90.55 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 1.69 Total: 54.12 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.31 Total: 44.33 kcal Total: -94.16 -6.33 -100.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193148251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.111 kcal (2) G-P(sol) polarization free energy of solvation -94.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds