Wall clock time and date at job start Tue Mar 31 2020 18:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.47059 * 2 1 4 4 O 1.42103 * 110.54212 * 291.62492 * 3 2 1 5 5 O 1.42097 * 110.54760 * 68.37425 * 3 2 1 6 6 N 1.65599 * 104.44956 * 179.97438 * 3 2 1 7 7 C 1.46501 * 120.00050 * 269.99737 * 6 3 2 8 8 C 1.46503 * 119.99975 * 89.99967 * 6 3 2 9 9 C 1.50703 * 109.47321 * 94.99796 * 8 6 3 10 10 O 1.21283 * 119.99722 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00158 * 180.02562 * 9 8 6 12 12 C 1.46505 * 120.00129 * 180.02562 * 11 9 8 13 13 H 1.08990 * 110.64091 * 34.29546 * 12 11 9 14 14 C 1.54321 * 110.71637 * 271.15565 * 12 11 9 15 15 N 1.47024 * 107.27220 * 219.44166 * 14 12 11 16 16 C 1.36939 * 125.64954 * 178.90172 * 15 14 12 17 17 H 1.08000 * 120.00456 * 341.52375 * 16 15 14 18 18 C 1.38809 * 119.99787 * 161.51520 * 16 15 14 19 19 N 1.31619 * 119.99974 * 157.62228 * 18 16 15 20 20 Si 1.86808 * 120.00099 * 337.62653 * 18 16 15 21 21 H 1.48498 * 109.47205 * 84.53254 * 20 18 16 22 22 H 1.48497 * 109.47010 * 204.53326 * 20 18 16 23 23 H 1.48503 * 109.46779 * 324.53092 * 20 18 16 24 24 C 1.47423 * 108.70103 * 358.94606 * 15 14 12 25 25 C 1.55118 * 104.94329 * 24.00092 * 24 15 14 26 26 H 1.09002 * 110.94079 * 81.21950 * 25 24 15 27 27 O 1.42908 * 111.16346 * 205.13445 * 25 24 15 28 28 H 1.08998 * 109.47036 * 300.00042 * 1 2 3 29 29 H 1.09001 * 109.46774 * 60.00132 * 1 2 3 30 30 H 1.08998 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47036 * 239.99958 * 2 1 3 32 32 H 1.08999 * 109.47437 * 119.99528 * 2 1 3 33 33 H 1.08991 * 109.46940 * 90.00435 * 7 6 3 34 34 H 1.09001 * 109.47020 * 210.00411 * 7 6 3 35 35 H 1.09002 * 109.46815 * 330.00004 * 7 6 3 36 36 H 1.09000 * 109.47479 * 214.99911 * 8 6 3 37 37 H 1.09000 * 109.47094 * 334.99653 * 8 6 3 38 38 H 0.97007 * 120.00109 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.88593 * 338.86290 * 14 12 11 40 40 H 1.09003 * 109.88664 * 99.87243 * 14 12 11 41 41 H 0.97004 * 119.99947 * 180.02562 * 19 18 16 42 42 H 1.08997 * 110.36743 * 142.96881 * 24 15 14 43 43 H 1.09005 * 110.36525 * 265.17670 * 24 15 14 44 44 H 0.96700 * 113.99651 * 292.17340 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8386 2.3439 1.2369 6 7 3.7843 1.5653 0.0007 7 6 4.5135 1.5015 1.2698 8 6 4.5146 1.5010 -1.2677 9 6 4.9956 2.8796 -1.6409 10 8 4.7520 3.8230 -0.9187 11 7 5.6956 3.0643 -2.7777 12 6 6.1637 4.4044 -3.1402 13 1 6.4261 4.9739 -2.2488 14 6 5.0969 5.1494 -3.9698 15 7 5.8039 5.8956 -5.0210 16 6 5.2143 6.6708 -5.9836 17 1 4.1654 6.5471 -6.2090 18 6 5.9648 7.6157 -6.6696 19 7 5.5673 8.0414 -7.8499 20 14 7.5392 8.2833 -5.9176 21 1 8.6632 7.3623 -6.2236 22 1 7.8293 9.6243 -6.4857 23 1 7.3765 8.3939 -4.4457 24 6 7.2527 5.6701 -4.8676 25 6 7.3698 4.3201 -4.1127 26 1 7.2610 3.4797 -4.7983 27 8 8.6021 4.2360 -3.3941 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 4.6044 0.4620 1.5846 34 1 5.5073 1.9300 1.1397 35 1 3.9713 2.0651 2.0291 36 1 5.3701 0.8342 -1.1611 37 1 3.8543 1.1229 -2.0483 38 1 5.8901 2.3098 -3.3555 39 1 4.4111 4.4326 -4.4214 40 1 4.5446 5.8384 -3.3306 41 1 6.0920 8.7015 -8.3294 42 1 7.7316 5.6024 -5.8444 43 1 7.7014 6.4717 -4.2808 44 1 9.3844 4.1815 -3.9599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197387829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:27 Heat of formation + Delta-G solvation = -108.154552 kcal Electronic energy + Delta-G solvation = -28048.658114 eV Core-core repulsion = 23937.125304 eV Total energy + Delta-G solvation = -4111.532811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.92426 -38.26472 -37.33893 -36.20976 -35.93257 -35.35746 -34.13374 -33.56017 -31.95506 -29.73068 -28.36211 -27.52001 -25.63752 -24.37555 -23.94762 -21.28398 -20.96469 -20.07236 -19.08055 -18.09868 -17.66337 -17.31455 -16.95921 -16.68067 -16.40955 -15.96688 -15.34422 -14.97407 -14.78678 -14.42639 -14.34681 -13.97579 -13.75537 -13.61392 -13.32483 -13.17088 -13.03467 -12.91174 -12.81393 -12.54601 -12.26640 -12.24654 -12.00319 -11.97070 -11.84025 -11.75625 -11.37920 -11.25149 -10.93555 -10.84840 -10.47035 -10.26726 -10.07615 -9.71976 -9.47314 -9.17531 -8.94039 -8.66076 -7.09853 -5.96670 -3.28401 -0.09078 2.28018 2.69179 3.18108 3.30166 3.47912 3.52288 3.64760 3.80123 4.10806 4.20548 4.33742 4.38414 4.52322 4.69913 4.73429 4.85635 4.90931 4.97209 5.13555 5.17108 5.19696 5.23031 5.28990 5.33728 5.42983 5.46403 5.57698 5.63582 5.84787 5.87790 6.06606 6.33198 6.38075 6.48854 6.66856 6.80168 7.57073 7.62956 7.77894 8.28141 8.32046 8.80119 9.65256 10.10443 11.19097 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.002910 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.340264 B = 9618.209845 C =10375.464940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.634 4.634 3 S 2.606 3.394 4 O -0.939 6.939 5 O -0.947 6.947 6 N -0.985 5.985 7 C 0.087 3.913 8 C 0.107 3.893 9 C 0.496 3.504 10 O -0.523 6.523 11 N -0.715 5.715 12 C 0.143 3.857 13 H 0.104 0.896 14 C 0.128 3.872 15 N -0.604 5.604 16 C -0.242 4.242 17 H 0.096 0.904 18 C 0.023 3.977 19 N -0.906 5.906 20 Si 0.882 3.118 21 H -0.287 1.287 22 H -0.301 1.301 23 H -0.275 1.275 24 C 0.086 3.914 25 C 0.082 3.918 26 H 0.074 0.926 27 O -0.562 6.562 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.399 0.601 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.264 0.736 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -23.726 15.674 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.763 4.763 3 S 2.697 3.303 4 O -0.929 6.929 5 O -0.937 6.937 6 N -0.821 5.821 7 C -0.058 4.058 8 C -0.023 4.023 9 C 0.279 3.721 10 O -0.398 6.398 11 N -0.368 5.368 12 C 0.038 3.962 13 H 0.122 0.878 14 C 0.001 3.999 15 N -0.332 5.332 16 C -0.369 4.369 17 H 0.113 0.887 18 C -0.176 4.176 19 N -0.550 5.550 20 Si 0.712 3.288 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.201 1.201 24 C -0.041 4.041 25 C 0.022 3.978 26 H 0.091 0.909 27 O -0.366 6.366 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.233 0.767 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.531 -22.051 16.557 27.691 hybrid contribution 1.633 -0.563 -0.532 1.808 sum -0.897 -22.615 16.025 27.731 Atomic orbital electron populations 1.21514 0.90406 1.05046 1.03731 1.30589 1.07362 1.26927 1.11444 1.05408 0.72902 0.77212 0.74729 1.93653 1.82713 1.71663 1.44890 1.93584 1.82802 1.71991 1.45351 1.57111 1.24628 1.89540 1.10870 1.21592 0.98902 1.01189 0.84140 1.21114 0.99429 0.95476 0.86282 1.21041 0.78249 0.91643 0.81158 1.90733 1.55245 1.42724 1.51048 1.45887 1.56441 1.10541 1.23886 1.21980 0.92504 0.83265 0.98489 0.87844 1.21739 0.93610 0.94714 0.89825 1.44599 0.99942 1.56392 1.32279 1.18673 0.96792 1.12381 1.09028 0.88664 1.25012 0.98008 0.98088 0.96504 1.69837 1.40495 1.33290 1.11379 0.87004 0.83956 0.78072 0.79747 1.21367 1.22870 1.20064 1.22621 0.88341 0.94150 0.98941 1.23317 0.83736 0.98179 0.92591 0.90861 1.86472 1.15861 1.96965 1.37321 0.90915 0.90723 0.89986 0.85071 0.85134 0.92747 0.90414 0.89555 0.87122 0.87080 0.76693 0.93903 0.93815 0.92628 0.91690 0.94478 0.77490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.92 37.16 0.37 -0.50 16 2 C -0.63 -3.50 6.90 37.16 0.26 -3.25 16 3 S 2.61 27.93 5.37 -107.50 -0.58 27.35 16 4 O -0.94 -13.89 16.99 -57.54 -0.98 -14.87 16 5 O -0.95 -13.19 16.57 -57.54 -0.95 -14.15 16 6 N -0.99 -9.32 2.61 -123.05 -0.32 -9.64 16 7 C 0.09 0.68 10.65 59.85 0.64 1.32 16 8 C 0.11 0.92 5.72 -5.19 -0.03 0.89 16 9 C 0.50 7.04 7.89 -10.99 -0.09 6.95 16 10 O -0.52 -9.96 16.10 5.56 0.09 -9.87 16 11 N -0.72 -9.63 5.12 -52.03 -0.27 -9.90 16 12 C 0.14 2.52 3.00 -66.10 -0.20 2.32 16 13 H 0.10 2.05 7.62 -51.93 -0.40 1.65 16 14 C 0.13 2.73 7.00 -3.06 -0.02 2.71 16 15 N -0.60 -14.87 3.21 -169.94 -0.54 -15.42 16 16 C -0.24 -6.97 10.57 -15.06 -0.16 -7.13 16 17 H 0.10 2.91 8.06 -52.49 -0.42 2.49 16 18 C 0.02 0.66 5.43 -17.43 -0.09 0.57 16 19 N -0.91 -28.03 13.97 55.49 0.78 -27.26 16 20 Si 0.88 22.74 24.27 -169.99 -4.13 18.62 16 21 H -0.29 -6.91 6.49 56.52 0.37 -6.55 16 22 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 23 H -0.27 -7.17 6.66 56.52 0.38 -6.80 16 24 C 0.09 1.84 4.44 -2.42 -0.01 1.83 16 25 C 0.08 1.35 4.06 -24.47 -0.10 1.25 16 26 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 27 O -0.56 -8.21 13.48 -35.23 -0.47 -8.68 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.09 0.79 6.91 -51.93 -0.36 0.43 16 36 H 0.11 0.51 8.11 -51.93 -0.42 0.09 16 37 H 0.11 0.70 7.61 -51.93 -0.40 0.31 16 38 H 0.40 3.84 8.54 -40.82 -0.35 3.49 16 39 H 0.04 0.89 8.03 -51.93 -0.42 0.48 16 40 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.07 1.43 6.63 -51.93 -0.34 1.08 16 43 H 0.04 0.86 5.57 -51.93 -0.29 0.57 16 44 H 0.38 3.86 9.12 45.56 0.42 4.28 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -41.41 371.10 -7.19 -48.60 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.97 Total: 2.67 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 0.56 Total: 6.96 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.36 Total: -62.22 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.32 Total: -47.57 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.13 Total: 18.62 kcal Atomic # 16 Polarization: 27.93 SS G_CDS: -0.58 Total: 27.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -41.41 -7.19 -48.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197387829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.555 kcal (2) G-P(sol) polarization free energy of solvation -41.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds