Wall clock time and date at job start Tue Mar 31 2020 18:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.47059 * 2 1 4 4 O 1.42103 * 110.54212 * 291.62492 * 3 2 1 5 5 O 1.42097 * 110.54760 * 68.37425 * 3 2 1 6 6 N 1.65599 * 104.44956 * 179.97438 * 3 2 1 7 7 C 1.46501 * 120.00050 * 269.99737 * 6 3 2 8 8 C 1.46503 * 119.99975 * 89.99967 * 6 3 2 9 9 C 1.50703 * 109.47321 * 94.99796 * 8 6 3 10 10 O 1.21283 * 119.99722 * 359.97438 * 9 8 6 11 11 N 1.34770 * 120.00158 * 180.02562 * 9 8 6 12 12 C 1.46505 * 120.00129 * 180.02562 * 11 9 8 13 13 H 1.08990 * 110.64091 * 34.29546 * 12 11 9 14 14 C 1.54321 * 110.71637 * 271.15565 * 12 11 9 15 15 N 1.47024 * 107.27220 * 219.44166 * 14 12 11 16 16 C 1.36939 * 125.64954 * 178.90172 * 15 14 12 17 17 H 1.08000 * 120.00456 * 341.52375 * 16 15 14 18 18 C 1.38809 * 119.99787 * 161.51520 * 16 15 14 19 19 N 1.31619 * 119.99974 * 157.62228 * 18 16 15 20 20 Si 1.86808 * 120.00099 * 337.62653 * 18 16 15 21 21 H 1.48498 * 109.47205 * 84.53254 * 20 18 16 22 22 H 1.48497 * 109.47010 * 204.53326 * 20 18 16 23 23 H 1.48503 * 109.46779 * 324.53092 * 20 18 16 24 24 C 1.47423 * 108.70103 * 358.94606 * 15 14 12 25 25 C 1.55118 * 104.94329 * 24.00092 * 24 15 14 26 26 H 1.09002 * 110.94079 * 81.21950 * 25 24 15 27 27 O 1.42908 * 111.16346 * 205.13445 * 25 24 15 28 28 H 1.08998 * 109.47036 * 300.00042 * 1 2 3 29 29 H 1.09001 * 109.46774 * 60.00132 * 1 2 3 30 30 H 1.08998 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47036 * 239.99958 * 2 1 3 32 32 H 1.08999 * 109.47437 * 119.99528 * 2 1 3 33 33 H 1.08991 * 109.46940 * 90.00435 * 7 6 3 34 34 H 1.09001 * 109.47020 * 210.00411 * 7 6 3 35 35 H 1.09002 * 109.46815 * 330.00004 * 7 6 3 36 36 H 1.09000 * 109.47479 * 214.99911 * 8 6 3 37 37 H 1.09000 * 109.47094 * 334.99653 * 8 6 3 38 38 H 0.97007 * 120.00109 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.88593 * 338.86290 * 14 12 11 40 40 H 1.09003 * 109.88664 * 99.87243 * 14 12 11 41 41 H 0.97004 * 119.99947 * 180.02562 * 19 18 16 42 42 H 1.08997 * 110.36743 * 142.96881 * 24 15 14 43 43 H 1.09005 * 110.36525 * 265.17670 * 24 15 14 44 44 H 0.96700 * 113.99651 * 292.17340 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8386 2.3439 1.2369 6 7 3.7843 1.5653 0.0007 7 6 4.5135 1.5015 1.2698 8 6 4.5146 1.5010 -1.2677 9 6 4.9956 2.8796 -1.6409 10 8 4.7520 3.8230 -0.9187 11 7 5.6956 3.0643 -2.7777 12 6 6.1637 4.4044 -3.1402 13 1 6.4261 4.9739 -2.2488 14 6 5.0969 5.1494 -3.9698 15 7 5.8039 5.8956 -5.0210 16 6 5.2143 6.6708 -5.9836 17 1 4.1654 6.5471 -6.2090 18 6 5.9648 7.6157 -6.6696 19 7 5.5673 8.0414 -7.8499 20 14 7.5392 8.2833 -5.9176 21 1 8.6632 7.3623 -6.2236 22 1 7.8293 9.6243 -6.4857 23 1 7.3765 8.3939 -4.4457 24 6 7.2527 5.6701 -4.8676 25 6 7.3698 4.3201 -4.1127 26 1 7.2610 3.4797 -4.7983 27 8 8.6021 4.2360 -3.3941 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 4.6044 0.4620 1.5846 34 1 5.5073 1.9300 1.1397 35 1 3.9713 2.0651 2.0291 36 1 5.3701 0.8342 -1.1611 37 1 3.8543 1.1229 -2.0483 38 1 5.8901 2.3098 -3.3555 39 1 4.4111 4.4326 -4.4214 40 1 4.5446 5.8384 -3.3306 41 1 6.0920 8.7015 -8.3294 42 1 7.7316 5.6024 -5.8444 43 1 7.7014 6.4717 -4.2808 44 1 9.3844 4.1815 -3.9599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197387829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:26 Heat of formation + Delta-G solvation = -147.912626 kcal Electronic energy + Delta-G solvation = -28050.382154 eV Core-core repulsion = 23937.125304 eV Total energy + Delta-G solvation = -4113.256850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14755 -39.65503 -38.24724 -37.08400 -36.84468 -36.71764 -35.56003 -34.02677 -33.98951 -31.08587 -29.69407 -28.93833 -26.59405 -25.75079 -24.70217 -22.96660 -22.21779 -21.53572 -19.89692 -19.21821 -18.80251 -18.72144 -18.22345 -17.75297 -17.33791 -17.25079 -16.57547 -16.14052 -15.99129 -15.62661 -15.36673 -15.26911 -15.00583 -14.75586 -14.64075 -14.25892 -14.05203 -13.96138 -13.80927 -13.66791 -13.41077 -13.38901 -13.28938 -13.19689 -12.96101 -12.73522 -12.60407 -12.46014 -12.39686 -12.37806 -11.70299 -11.65089 -11.56656 -11.35454 -11.09234 -10.81593 -10.18254 -9.95895 -9.17878 -8.24140 -5.53736 -0.80892 1.22900 1.37027 1.45499 1.56653 1.63114 2.10772 2.34483 2.79600 2.96379 3.05979 3.11222 3.36497 3.55423 3.56872 3.75483 3.83826 3.92006 3.96167 3.98009 4.23908 4.28378 4.40091 4.42650 4.44282 4.67354 4.70420 4.75151 4.81983 4.84070 4.88092 4.89153 4.96062 5.05569 5.12299 5.41296 5.45321 5.57100 6.02968 6.56493 6.64436 6.81591 7.28713 7.43436 7.96364 8.95357 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.002910 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.340264 B = 9618.209845 C =10375.464940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.591 4.591 3 S 2.585 3.415 4 O -0.997 6.997 5 O -0.998 6.998 6 N -0.988 5.988 7 C 0.082 3.918 8 C 0.109 3.891 9 C 0.483 3.517 10 O -0.583 6.583 11 N -0.701 5.701 12 C 0.154 3.846 13 H 0.078 0.922 14 C 0.127 3.873 15 N -0.619 5.619 16 C -0.243 4.243 17 H 0.059 0.941 18 C -0.029 4.029 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.253 1.253 22 H -0.305 1.305 23 H -0.284 1.284 24 C 0.075 3.925 25 C 0.111 3.889 26 H 0.111 0.889 27 O -0.562 6.562 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.166 0.834 37 H 0.139 0.861 38 H 0.422 0.578 39 H 0.047 0.953 40 H 0.010 0.990 41 H 0.266 0.734 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -28.421 16.464 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.725 4.725 3 S 2.684 3.316 4 O -0.987 6.987 5 O -0.989 6.989 6 N -0.825 5.825 7 C -0.063 4.063 8 C -0.020 4.020 9 C 0.269 3.731 10 O -0.461 6.461 11 N -0.355 5.355 12 C 0.047 3.953 13 H 0.096 0.904 14 C 0.001 3.999 15 N -0.347 5.347 16 C -0.372 4.372 17 H 0.077 0.923 18 C -0.225 4.225 19 N -0.596 5.596 20 Si 0.774 3.226 21 H -0.178 1.178 22 H -0.233 1.233 23 H -0.211 1.211 24 C -0.050 4.050 25 C 0.050 3.950 26 H 0.128 0.872 27 O -0.370 6.370 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.183 0.817 37 H 0.157 0.843 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.316 -26.766 17.346 31.896 hybrid contribution 0.840 0.828 -0.731 1.387 sum 0.524 -25.938 16.615 30.808 Atomic orbital electron populations 1.21734 0.90626 1.06726 1.03337 1.30245 1.06821 1.20514 1.14943 1.05690 0.73394 0.79744 0.72780 1.93578 1.83608 1.75005 1.46497 1.93513 1.83566 1.75135 1.46649 1.56977 1.24158 1.89664 1.11655 1.21745 0.97690 1.03731 0.83084 1.21474 1.01788 0.92143 0.86587 1.22341 0.76906 0.93583 0.80237 1.90718 1.57273 1.45231 1.52893 1.45702 1.56043 1.09402 1.24330 1.21484 0.91972 0.84942 0.96949 0.90415 1.21780 0.94813 0.94201 0.89149 1.44635 1.01945 1.55961 1.32180 1.18575 0.95703 1.13191 1.09700 0.92298 1.25618 1.01790 0.98427 0.96641 1.69948 1.42569 1.34355 1.12739 0.85968 0.81201 0.77565 0.77844 1.17760 1.23278 1.21078 1.22795 0.85824 0.96934 0.99475 1.22968 0.84056 0.96215 0.91711 0.87159 1.86449 1.16069 1.96648 1.37805 0.91419 0.91482 0.86996 0.81538 0.81736 0.87953 0.91141 0.91994 0.81678 0.84318 0.73933 0.93535 0.97217 0.92517 0.91709 0.95840 0.74752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.92 71.98 0.71 -0.74 16 2 C -0.59 -4.07 6.90 71.98 0.50 -3.57 16 3 S 2.59 53.89 5.37 -56.49 -0.30 53.59 16 4 O -1.00 -30.35 16.99 -127.65 -2.17 -32.52 16 5 O -1.00 -29.14 16.57 -127.65 -2.12 -31.25 16 6 N -0.99 -16.66 2.61 -543.22 -1.42 -18.08 16 7 C 0.08 1.13 10.65 127.77 1.36 2.49 16 8 C 0.11 1.50 5.72 85.63 0.49 1.99 16 9 C 0.48 13.16 7.89 87.66 0.69 13.85 16 10 O -0.58 -22.97 16.10 -3.04 -0.05 -23.01 16 11 N -0.70 -17.40 5.12 -436.93 -2.24 -19.64 16 12 C 0.15 5.31 3.00 46.18 0.14 5.45 16 13 H 0.08 3.13 7.62 -2.39 -0.02 3.11 16 14 C 0.13 5.60 7.00 86.73 0.61 6.21 16 15 N -0.62 -31.02 3.21 -691.56 -2.22 -33.24 16 16 C -0.24 -14.56 10.57 84.03 0.89 -13.67 16 17 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 18 C -0.03 -1.77 5.43 84.86 0.46 -1.31 16 19 N -0.95 -60.42 13.97 21.65 0.30 -60.12 16 20 Si 0.95 47.60 24.27 68.60 1.66 49.26 16 21 H -0.25 -11.25 6.49 99.48 0.65 -10.60 16 22 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 23 H -0.28 -14.62 6.66 99.48 0.66 -13.95 16 24 C 0.08 3.12 4.44 86.93 0.39 3.50 16 25 C 0.11 3.31 4.06 32.06 0.13 3.44 16 26 H 0.11 2.57 8.00 -2.39 -0.02 2.55 16 27 O -0.56 -14.22 13.48 -148.98 -2.01 -16.23 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.17 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 1.06 8.07 -2.39 -0.02 1.04 16 35 H 0.06 1.15 6.91 -2.39 -0.02 1.13 16 36 H 0.17 0.52 8.11 -2.39 -0.02 0.50 16 37 H 0.14 1.18 7.61 -2.39 -0.02 1.16 16 38 H 0.42 6.41 8.54 -92.70 -0.79 5.62 16 39 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.06 2.69 6.63 -2.39 -0.02 2.67 16 43 H 0.02 1.06 5.57 -2.38 -0.01 1.05 16 44 H 0.40 6.26 9.12 -74.06 -0.68 5.59 16 Total: -1.00 -99.91 371.10 -4.72 -104.64 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -0.54 Total: 8.97 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 6.36 Total: 17.63 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -5.57 Total: -131.08 kcal Atomic # 8 Polarization: -96.67 SS G_CDS: -6.34 Total: -103.01 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.66 Total: 49.26 kcal Atomic # 16 Polarization: 53.89 SS G_CDS: -0.30 Total: 53.59 kcal Total: -99.91 -4.72 -104.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197387829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.276 kcal (2) G-P(sol) polarization free energy of solvation -99.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds