Wall clock time and date at job start Tue Mar 31 2020 19:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34729 * 117.00363 * 2 1 4 4 O 1.21483 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.47564 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.39737 * 120.10700 * 0.02562 * 5 3 2 7 7 C 1.38028 * 120.19055 * 180.02562 * 6 5 3 8 8 C 1.38102 * 120.39417 * 359.97438 * 7 6 5 9 9 C 1.39647 * 120.20437 * 359.97438 * 8 7 6 10 10 C 1.47693 * 120.09775 * 180.02562 * 9 8 7 11 11 O 1.21574 * 120.00159 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99949 * 359.97438 * 10 9 8 13 13 C 1.46499 * 120.00037 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.41221 * 324.86218 * 13 12 10 15 15 C 1.52958 * 109.41185 * 84.65266 * 13 12 10 16 16 C 1.53224 * 109.40702 * 183.70389 * 15 13 12 17 17 C 1.51272 * 108.53805 * 305.37501 * 16 15 13 18 18 C 1.37875 * 120.84993 * 231.32711 * 17 16 15 19 19 N 1.31507 * 120.00220 * 180.02562 * 18 17 16 20 20 Si 1.86805 * 119.99859 * 0.02562 * 18 17 16 21 21 H 1.48500 * 109.47134 * 90.00408 * 20 18 17 22 22 H 1.48499 * 109.47214 * 210.00028 * 20 18 17 23 23 H 1.48497 * 109.47362 * 330.00273 * 20 18 17 24 24 C 1.51265 * 118.30148 * 51.34028 * 17 16 15 25 25 C 1.52963 * 109.41260 * 205.00173 * 13 12 10 26 26 C 1.39711 * 119.80549 * 359.72663 * 9 8 7 27 27 F 1.35099 * 120.19264 * 180.29299 * 26 9 8 28 28 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46782 * 59.99879 * 1 2 3 30 30 H 1.09004 * 109.47085 * 299.99998 * 1 2 3 31 31 H 1.08001 * 119.90767 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.80233 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.89668 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99994 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.48272 * 303.68615 * 15 13 12 36 36 H 1.09002 * 109.48636 * 63.71873 * 15 13 12 37 37 H 1.08997 * 109.63173 * 185.65616 * 16 15 13 38 38 H 1.09006 * 109.62679 * 65.08558 * 16 15 13 39 39 H 0.96999 * 120.00439 * 180.02562 * 19 18 17 40 40 H 1.08995 * 109.62851 * 188.94569 * 24 17 16 41 41 H 1.08998 * 109.78062 * 68.46191 * 24 17 16 42 42 H 1.08991 * 109.48047 * 296.27975 * 25 13 12 43 43 H 1.09001 * 109.47777 * 56.31043 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 0.0005 5 6 3.5373 1.2775 0.0006 6 6 4.3005 0.1070 0.0006 7 6 5.6790 0.1771 0.0016 8 6 6.3163 1.4023 0.0022 9 6 5.5698 2.5825 0.0011 10 6 6.2537 3.8915 0.0011 11 8 5.6021 4.9179 0.0007 12 7 7.6003 3.9482 0.0027 13 6 8.2788 5.2467 0.0021 14 1 7.7022 5.9564 -0.5910 15 6 8.3933 5.7610 1.4381 16 6 9.0192 7.1596 1.4295 17 6 10.3340 7.0936 0.6843 18 6 11.4901 7.5942 1.2445 19 7 12.6239 7.5286 0.5816 20 14 11.4458 8.3658 2.9451 21 1 11.6973 7.3206 3.9696 22 1 12.4930 9.4144 3.0404 23 1 10.1119 8.9758 3.1774 24 6 10.3478 6.4646 -0.6913 25 6 9.6738 5.0911 -0.6058 26 6 4.1740 2.5214 -0.0063 27 9 3.4442 3.6582 -0.0133 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 3.8104 -0.8554 -0.0003 32 1 6.2627 -0.7315 0.0021 33 1 7.3953 1.4479 0.0034 34 1 8.1203 3.1294 0.0034 35 1 7.4013 5.8094 1.8871 36 1 9.0221 5.0849 2.0174 37 1 9.1950 7.4884 2.4537 38 1 8.3488 7.8576 0.9280 39 1 13.4373 7.8805 0.9758 40 1 11.3772 6.3467 -1.0296 41 1 9.8024 7.0970 -1.3916 42 1 10.2722 4.4309 0.0219 43 1 9.5892 4.6646 -1.6053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197652739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:34 Heat of formation + Delta-G solvation = -146.980858 kcal Electronic energy + Delta-G solvation = -28424.669264 eV Core-core repulsion = 24156.088906 eV Total energy + Delta-G solvation = -4268.580359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -49.03758 -40.84888 -40.02084 -38.51174 -36.79002 -36.69969 -33.90083 -32.48667 -31.39207 -31.02370 -29.69862 -28.20915 -27.28611 -24.84973 -24.06574 -22.14930 -21.63781 -21.52918 -20.32533 -19.65718 -18.53016 -17.82438 -17.32539 -16.82857 -16.76029 -16.48187 -15.93727 -15.79716 -15.40829 -15.12877 -14.56314 -14.43130 -14.33809 -13.77049 -13.69115 -13.42545 -13.21785 -12.81941 -12.73484 -12.57090 -12.33189 -12.26312 -12.20233 -12.07811 -11.71334 -11.19607 -11.05985 -10.88009 -10.84683 -10.74970 -10.19597 -10.01608 -9.82526 -9.69563 -9.60982 -9.23438 -9.04750 -8.89391 -8.48958 -8.37579 -6.12728 -4.03295 0.03519 0.45618 1.98677 2.16135 2.79003 3.23393 3.28739 3.35545 3.38779 3.46709 3.71413 4.08825 4.29493 4.37409 4.38062 4.53429 4.71700 4.76452 4.80861 5.05097 5.15193 5.15731 5.41355 5.44465 5.57663 5.68140 5.71554 5.83600 5.90740 6.14551 6.19746 6.39737 6.44237 6.66575 6.70404 6.85992 6.92266 7.07476 7.19016 7.32324 7.42213 7.61867 7.66517 7.70143 7.83598 8.35479 8.38521 8.93719 9.52652 10.96720 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027413 B = 0.002386 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.160046 B =11731.970265 C =12151.555832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.508 3.492 4 O -0.487 6.487 5 C -0.179 4.179 6 C -0.014 4.014 7 C -0.151 4.151 8 C -0.022 4.022 9 C -0.178 4.178 10 C 0.550 3.450 11 O -0.522 6.522 12 N -0.715 5.715 13 C 0.154 3.846 14 H 0.081 0.919 15 C -0.114 4.114 16 C -0.014 4.014 17 C -0.489 4.489 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.013 3.987 25 C -0.114 4.114 26 C 0.222 3.778 27 F -0.087 7.087 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.393 0.607 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.020 0.980 39 H 0.264 0.736 40 H 0.061 0.939 41 H 0.007 0.993 42 H 0.055 0.945 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 -21.503 -1.500 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.352 3.648 4 O -0.375 6.375 5 C -0.181 4.181 6 C -0.032 4.032 7 C -0.169 4.169 8 C -0.040 4.040 9 C -0.182 4.182 10 C 0.335 3.665 11 O -0.398 6.398 12 N -0.365 5.365 13 C 0.052 3.948 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.052 4.052 17 C -0.508 4.508 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.191 1.191 24 C -0.025 4.025 25 C -0.152 4.152 26 C 0.200 3.800 27 F -0.064 7.064 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.227 0.773 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.591 -20.326 -1.501 26.281 hybrid contribution 0.008 0.143 0.987 0.997 sum -16.583 -20.183 -0.515 26.127 Atomic orbital electron populations 1.23322 0.75475 1.03897 1.02946 1.86498 1.23903 1.32182 1.84606 1.20766 0.88432 0.81904 0.73671 1.90945 1.66409 1.35686 1.44432 1.19072 0.90443 0.93406 1.15196 1.21533 0.93800 0.97398 0.90474 1.21164 0.94183 0.98345 1.03258 1.21598 1.00785 0.90811 0.90840 1.20254 0.91805 0.96012 1.10173 1.17839 0.83041 0.87623 0.77956 1.90870 1.65181 1.34824 1.48949 1.46318 1.05278 1.10957 1.73944 1.21141 0.93418 0.82064 0.98198 0.90093 1.21920 0.98578 1.00088 0.94734 1.19722 0.96418 0.92032 0.97023 1.20036 0.91456 1.38026 1.01269 1.24835 0.94994 0.95301 0.97516 1.69824 0.99204 1.45809 1.37916 0.86660 0.77651 0.79426 0.84653 1.20451 1.21635 1.19138 1.19334 0.97661 0.89709 0.95788 1.21941 0.93707 1.02153 0.97427 1.17675 0.88042 0.81540 0.92711 1.91709 1.76283 1.47211 1.91234 0.87735 0.91631 0.91622 0.83064 0.83560 0.83636 0.77293 0.94367 0.92958 0.95009 0.96149 0.92581 0.92020 0.97493 0.92630 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.35 -3.16 9.80 -40.57 -0.40 -3.56 16 3 C 0.51 6.06 7.89 34.53 0.27 6.33 16 4 O -0.49 -7.47 15.13 -19.25 -0.29 -7.76 16 5 C -0.18 -1.98 5.87 -104.98 -0.62 -2.59 16 6 C -0.01 -0.10 9.61 -39.10 -0.38 -0.47 16 7 C -0.15 -0.92 10.01 -39.71 -0.40 -1.32 16 8 C -0.02 -0.18 9.53 -39.11 -0.37 -0.55 16 9 C -0.18 -2.28 5.87 -104.96 -0.62 -2.90 16 10 C 0.55 9.12 7.73 -12.40 -0.10 9.02 16 11 O -0.52 -11.01 15.00 5.30 0.08 -10.93 16 12 N -0.71 -10.91 5.02 -54.84 -0.28 -11.18 16 13 C 0.15 2.95 2.35 -67.97 -0.16 2.79 16 14 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 15 C -0.11 -2.38 5.50 -26.64 -0.15 -2.53 16 16 C -0.01 -0.33 5.59 -27.49 -0.15 -0.48 16 17 C -0.49 -12.67 5.51 -98.92 -0.55 -13.21 16 18 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 19 N -0.89 -25.08 12.73 55.43 0.71 -24.37 16 20 Si 0.89 21.07 27.27 -169.99 -4.64 16.43 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.23 6.46 56.52 0.37 -5.87 16 24 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 25 C -0.11 -2.23 5.40 -26.63 -0.14 -2.37 16 26 C 0.22 3.11 7.27 -38.47 -0.28 2.83 16 27 F -0.09 -1.55 13.83 2.25 0.03 -1.52 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 0.68 7.60 -52.49 -0.40 0.28 16 32 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.15 0.83 6.38 -52.49 -0.34 0.50 16 34 H 0.39 4.52 6.62 -40.82 -0.27 4.25 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -33.98 359.26 -7.61 -41.58 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.41 Total: -2.06 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.82 Total: -2.05 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.43 Total: -35.56 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.61 Total: -22.25 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.64 Total: 16.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.98 -7.61 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197652739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.397 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds