Wall clock time and date at job start Tue Mar 31 2020 19:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34729 * 117.00363 * 2 1 4 4 O 1.21483 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.47564 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.39737 * 120.10700 * 0.02562 * 5 3 2 7 7 C 1.38028 * 120.19055 * 180.02562 * 6 5 3 8 8 C 1.38102 * 120.39417 * 359.97438 * 7 6 5 9 9 C 1.39647 * 120.20437 * 359.97438 * 8 7 6 10 10 C 1.47693 * 120.09775 * 180.02562 * 9 8 7 11 11 O 1.21574 * 120.00159 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99949 * 359.97438 * 10 9 8 13 13 C 1.46499 * 120.00037 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.41221 * 324.86218 * 13 12 10 15 15 C 1.52958 * 109.41185 * 84.65266 * 13 12 10 16 16 C 1.53224 * 109.40702 * 183.70389 * 15 13 12 17 17 C 1.51272 * 108.53805 * 305.37501 * 16 15 13 18 18 C 1.37875 * 120.84993 * 231.32711 * 17 16 15 19 19 N 1.31507 * 120.00220 * 180.02562 * 18 17 16 20 20 Si 1.86805 * 119.99859 * 0.02562 * 18 17 16 21 21 H 1.48500 * 109.47134 * 90.00408 * 20 18 17 22 22 H 1.48499 * 109.47214 * 210.00028 * 20 18 17 23 23 H 1.48497 * 109.47362 * 330.00273 * 20 18 17 24 24 C 1.51265 * 118.30148 * 51.34028 * 17 16 15 25 25 C 1.52963 * 109.41260 * 205.00173 * 13 12 10 26 26 C 1.39711 * 119.80549 * 359.72663 * 9 8 7 27 27 F 1.35099 * 120.19264 * 180.29299 * 26 9 8 28 28 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46782 * 59.99879 * 1 2 3 30 30 H 1.09004 * 109.47085 * 299.99998 * 1 2 3 31 31 H 1.08001 * 119.90767 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.80233 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.89668 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99994 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.48272 * 303.68615 * 15 13 12 36 36 H 1.09002 * 109.48636 * 63.71873 * 15 13 12 37 37 H 1.08997 * 109.63173 * 185.65616 * 16 15 13 38 38 H 1.09006 * 109.62679 * 65.08558 * 16 15 13 39 39 H 0.96999 * 120.00439 * 180.02562 * 19 18 17 40 40 H 1.08995 * 109.62851 * 188.94569 * 24 17 16 41 41 H 1.08998 * 109.78062 * 68.46191 * 24 17 16 42 42 H 1.08991 * 109.48047 * 296.27975 * 25 13 12 43 43 H 1.09001 * 109.47777 * 56.31043 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 0.0005 5 6 3.5373 1.2775 0.0006 6 6 4.3005 0.1070 0.0006 7 6 5.6790 0.1771 0.0016 8 6 6.3163 1.4023 0.0022 9 6 5.5698 2.5825 0.0011 10 6 6.2537 3.8915 0.0011 11 8 5.6021 4.9179 0.0007 12 7 7.6003 3.9482 0.0027 13 6 8.2788 5.2467 0.0021 14 1 7.7022 5.9564 -0.5910 15 6 8.3933 5.7610 1.4381 16 6 9.0192 7.1596 1.4295 17 6 10.3340 7.0936 0.6843 18 6 11.4901 7.5942 1.2445 19 7 12.6239 7.5286 0.5816 20 14 11.4458 8.3658 2.9451 21 1 11.6973 7.3206 3.9696 22 1 12.4930 9.4144 3.0404 23 1 10.1119 8.9758 3.1774 24 6 10.3478 6.4646 -0.6913 25 6 9.6738 5.0911 -0.6058 26 6 4.1740 2.5214 -0.0063 27 9 3.4442 3.6582 -0.0133 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 3.8104 -0.8554 -0.0003 32 1 6.2627 -0.7315 0.0021 33 1 7.3953 1.4479 0.0034 34 1 8.1203 3.1294 0.0034 35 1 7.4013 5.8094 1.8871 36 1 9.0221 5.0849 2.0174 37 1 9.1950 7.4884 2.4537 38 1 8.3488 7.8576 0.9280 39 1 13.4373 7.8805 0.9758 40 1 11.3772 6.3467 -1.0296 41 1 9.8024 7.0970 -1.3916 42 1 10.2722 4.4309 0.0219 43 1 9.5892 4.6646 -1.6053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197652739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:33 Heat of formation + Delta-G solvation = -169.233423 kcal Electronic energy + Delta-G solvation = -28425.634208 eV Core-core repulsion = 24156.088906 eV Total energy + Delta-G solvation = -4269.545302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.12313 -41.69817 -41.19568 -39.48663 -38.35576 -37.59903 -35.50936 -33.83267 -32.71579 -31.85386 -31.48751 -29.20421 -28.61721 -25.66405 -25.16773 -23.72154 -23.30092 -22.44479 -21.53645 -21.31904 -19.60080 -18.68021 -18.25607 -18.12214 -17.65301 -17.46251 -17.40490 -16.85216 -16.69304 -16.41227 -15.82951 -15.77698 -15.52629 -15.00402 -14.70141 -14.55006 -14.46410 -14.29330 -14.16438 -13.94620 -13.54663 -13.40809 -13.31074 -12.96313 -12.93236 -12.80043 -12.70078 -12.56749 -11.93537 -11.89836 -11.83725 -11.74867 -11.53133 -11.19709 -10.84428 -10.70130 -10.54214 -10.47958 -10.07164 -9.88761 -8.17857 -6.11635 -0.69221 -0.39998 1.18826 1.36757 1.41644 1.42240 1.50025 1.78299 2.05721 2.40529 2.54011 2.88015 3.10022 3.32848 3.51029 3.71575 3.79141 4.02102 4.11305 4.17504 4.27543 4.30558 4.40154 4.47748 4.68339 4.70186 4.73428 4.76878 4.82412 4.95394 4.99364 5.06274 5.07686 5.10565 5.16455 5.21043 5.23359 5.52927 5.53902 5.57208 5.65265 5.75777 5.81942 6.34679 6.49932 6.51679 6.93483 7.17165 7.46608 8.92452 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027413 B = 0.002386 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.160046 B =11731.970265 C =12151.555832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.343 6.343 3 C 0.508 3.492 4 O -0.535 6.535 5 C -0.190 4.190 6 C 0.009 3.991 7 C -0.125 4.125 8 C -0.008 4.008 9 C -0.197 4.197 10 C 0.548 3.452 11 O -0.579 6.579 12 N -0.698 5.698 13 C 0.166 3.834 14 H 0.052 0.948 15 C -0.107 4.107 16 C -0.017 4.017 17 C -0.499 4.499 18 C 0.028 3.972 19 N -0.924 5.924 20 Si 0.936 3.064 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.265 1.265 24 C 0.007 3.993 25 C -0.098 4.098 26 C 0.181 3.819 27 F -0.126 7.126 28 H 0.145 0.855 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.188 0.812 32 H 0.199 0.801 33 H 0.178 0.822 34 H 0.415 0.585 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.007 0.993 39 H 0.264 0.736 40 H 0.038 0.962 41 H -0.006 1.006 42 H 0.066 0.934 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.830 -26.270 -0.897 30.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.259 6.259 3 C 0.354 3.646 4 O -0.426 6.426 5 C -0.193 4.193 6 C -0.009 4.009 7 C -0.142 4.142 8 C -0.026 4.026 9 C -0.201 4.201 10 C 0.336 3.664 11 O -0.459 6.459 12 N -0.350 5.350 13 C 0.061 3.939 14 H 0.070 0.930 15 C -0.146 4.146 16 C -0.055 4.055 17 C -0.518 4.518 18 C -0.171 4.171 19 N -0.564 5.564 20 Si 0.763 3.237 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.189 1.189 24 C -0.031 4.031 25 C -0.137 4.137 26 C 0.160 3.840 27 F -0.104 7.104 28 H 0.163 0.837 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.206 0.794 32 H 0.216 0.784 33 H 0.195 0.805 34 H 0.254 0.746 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.085 0.915 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.343 -25.169 -0.896 30.023 hybrid contribution -0.126 1.495 0.737 1.671 sum -16.469 -23.674 -0.159 28.840 Atomic orbital electron populations 1.23651 0.73939 1.06325 1.02497 1.86488 1.25342 1.30277 1.83820 1.21079 0.88979 0.82037 0.72500 1.90925 1.67479 1.37389 1.46823 1.19191 0.90275 0.93625 1.16170 1.22055 0.94384 0.97105 0.87347 1.21747 0.93764 0.99094 0.99617 1.22022 1.02084 0.89800 0.88708 1.19983 0.91292 0.95488 1.13344 1.18432 0.82959 0.88617 0.76410 1.90842 1.66334 1.37301 1.51460 1.45913 1.05119 1.10385 1.73565 1.20695 0.93102 0.83480 0.96575 0.92974 1.21793 0.98191 0.98522 0.96061 1.19728 0.95459 0.93756 0.96552 1.20536 0.92089 1.37186 1.01991 1.25505 0.94948 0.96046 1.00567 1.69932 0.99732 1.47387 1.39352 0.85872 0.77474 0.78904 0.81449 1.19336 1.21756 1.18941 1.19306 0.96643 0.92329 0.94781 1.21697 0.93244 0.99418 0.99316 1.18204 0.88757 0.81587 0.95450 1.91602 1.77245 1.49398 1.92104 0.83735 0.92154 0.92184 0.79434 0.78360 0.80514 0.74613 0.94728 0.91746 0.94954 0.97452 0.92663 0.94365 0.98787 0.91547 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.34 -5.41 9.80 -56.39 -0.55 -5.96 16 3 C 0.51 11.97 7.89 70.28 0.55 12.53 16 4 O -0.54 -17.35 15.13 19.89 0.30 -17.05 16 5 C -0.19 -3.94 5.87 -20.09 -0.12 -4.06 16 6 C 0.01 0.08 9.61 22.58 0.22 0.30 16 7 C -0.12 -0.71 10.01 22.19 0.22 -0.48 16 8 C -0.01 -0.09 9.53 22.58 0.22 0.12 16 9 C -0.20 -4.80 5.87 -20.08 -0.12 -4.92 16 10 C 0.55 18.16 7.73 86.74 0.67 18.83 16 11 O -0.58 -25.74 15.00 -3.95 -0.06 -25.80 16 12 N -0.70 -20.14 5.02 -445.68 -2.24 -22.38 16 13 C 0.17 6.26 2.35 44.97 0.11 6.37 16 14 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 15 C -0.11 -4.40 5.50 30.66 0.17 -4.23 16 16 C -0.02 -0.80 5.59 30.10 0.17 -0.63 16 17 C -0.50 -26.10 5.51 -16.17 -0.09 -26.19 16 18 C 0.03 1.53 5.46 84.66 0.46 1.99 16 19 N -0.92 -52.90 12.73 21.45 0.27 -52.63 16 20 Si 0.94 43.31 27.27 68.60 1.87 45.18 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.26 -12.02 6.46 99.48 0.64 -11.38 16 24 C 0.01 0.36 5.97 30.11 0.18 0.54 16 25 C -0.10 -3.71 5.40 30.66 0.17 -3.55 16 26 C 0.18 5.16 7.27 22.99 0.17 5.33 16 27 F -0.13 -4.88 13.83 44.97 0.62 -4.25 16 28 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.19 0.45 7.60 -2.91 -0.02 0.43 16 32 H 0.20 -0.72 8.06 -2.91 -0.02 -0.74 16 33 H 0.18 0.93 6.38 -2.91 -0.02 0.91 16 34 H 0.42 8.01 6.62 -92.71 -0.61 7.40 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.03 1.51 4.78 -2.39 -0.01 1.50 16 38 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.04 2.03 7.07 -2.39 -0.02 2.01 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -81.97 359.26 4.77 -77.20 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 0.39 Total: 2.24 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 4.17 Total: 3.45 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -1.97 Total: -75.01 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -0.31 Total: -48.81 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.62 Total: -4.25 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.87 Total: 45.18 kcal Total: -81.97 4.77 -77.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197652739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.037 kcal (2) G-P(sol) polarization free energy of solvation -81.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds