Wall clock time and date at job start Tue Mar 31 2020 18:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00091 * 2 1 4 4 S 1.65602 * 119.99861 * 180.02562 * 2 1 3 5 5 O 1.42093 * 104.27752 * 333.92508 * 4 2 1 6 6 O 1.42103 * 104.27297 * 206.06818 * 4 2 1 7 7 C 1.81400 * 104.45306 * 89.99827 * 4 2 1 8 8 C 1.52991 * 109.47210 * 179.97438 * 7 4 2 9 9 C 1.50708 * 109.46989 * 179.97438 * 8 7 4 10 10 O 1.21277 * 119.99823 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99848 * 180.02562 * 9 8 7 12 12 C 1.46491 * 119.99879 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.64670 * 31.85309 * 12 11 9 14 14 C 1.54335 * 110.85036 * 268.69058 * 12 11 9 15 15 N 1.47021 * 107.26526 * 219.67597 * 14 12 11 16 16 C 1.36934 * 125.64867 * 178.84756 * 15 14 12 17 17 H 1.08004 * 120.00035 * 342.88139 * 16 15 14 18 18 C 1.38812 * 120.00404 * 162.87654 * 16 15 14 19 19 N 1.31622 * 119.99728 * 331.97362 * 18 16 15 20 20 Si 1.86799 * 120.00267 * 151.97240 * 18 16 15 21 21 H 1.48506 * 109.46858 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47388 * 60.00205 * 20 18 16 23 23 H 1.48501 * 109.46953 * 300.00008 * 20 18 16 24 24 C 1.47421 * 108.70506 * 358.58056 * 15 14 12 25 25 C 1.54910 * 104.83090 * 24.35923 * 24 15 14 26 26 H 1.08994 * 111.00813 * 81.06389 * 25 24 15 27 27 O 1.42902 * 111.00509 * 204.91819 * 25 24 15 28 28 H 1.08996 * 109.46686 * 269.99424 * 1 2 3 29 29 H 1.09001 * 109.47141 * 29.99723 * 1 2 3 30 30 H 1.08998 * 109.47031 * 149.99443 * 1 2 3 31 31 H 1.08997 * 109.47806 * 239.99905 * 3 2 1 32 32 H 1.09000 * 109.47054 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.46807 * 120.00016 * 3 2 1 34 34 H 1.09007 * 109.47124 * 59.99596 * 7 4 2 35 35 H 1.09007 * 109.46915 * 300.00354 * 7 4 2 36 36 H 1.09003 * 109.47001 * 60.00411 * 8 7 4 37 37 H 1.09000 * 109.47639 * 299.99783 * 8 7 4 38 38 H 0.97000 * 120.00055 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.99582 * 100.19542 * 14 12 11 40 40 H 1.08999 * 109.77686 * 339.02724 * 14 12 11 41 41 H 0.97004 * 120.00411 * 353.95791 * 19 18 16 42 42 H 1.09000 * 110.37006 * 143.19570 * 24 15 14 43 43 H 1.09005 * 110.36937 * 265.52137 * 24 15 14 44 44 H 0.96703 * 114.00038 * 298.54291 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3970 -2.3563 0.6042 6 8 3.5395 -1.1193 0.6047 7 6 2.5193 -1.8255 -1.7574 8 6 3.2818 -3.1450 -1.8918 9 6 3.4693 -3.4704 -3.3514 10 8 3.0352 -2.7209 -4.2003 11 7 4.1184 -4.5949 -3.7132 12 6 4.3011 -4.9109 -5.1319 13 1 4.3958 -3.9980 -5.7199 14 6 3.1368 -5.7778 -5.6559 15 7 3.7138 -6.7826 -6.5609 16 6 3.0151 -7.7602 -7.2176 17 1 2.0185 -8.0218 -6.8939 18 6 3.5876 -8.4149 -8.2995 19 7 4.4873 -7.8015 -9.0389 20 14 3.0812 -10.1664 -8.7059 21 1 3.8335 -10.6353 -9.8974 22 1 1.6247 -10.2068 -8.9921 23 1 3.3836 -11.0497 -7.5511 24 6 5.1684 -6.5594 -6.6492 25 6 5.5375 -5.8259 -5.3357 26 1 5.6422 -6.5305 -4.5108 27 8 6.7269 -5.0508 -5.4987 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 2.8242 1.3265 -0.8899 32 1 1.4892 2.0972 0.0005 33 1 2.8242 1.3264 0.8901 34 1 3.0866 -1.0279 -2.2372 35 1 1.5450 -1.9178 -2.2375 36 1 2.7149 -3.9428 -1.4120 37 1 4.2561 -3.0523 -1.4119 38 1 4.4652 -5.1945 -3.0341 39 1 2.4240 -5.1564 -6.1981 40 1 2.6405 -6.2725 -4.8210 41 1 4.6866 -6.8651 -8.8831 42 1 5.6951 -7.5116 -6.7129 43 1 5.4048 -5.9358 -7.5114 44 1 7.5087 -5.5729 -5.7253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198976537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:51 Heat of formation + Delta-G solvation = -122.233787 kcal Electronic energy + Delta-G solvation = -27226.139841 eV Core-core repulsion = 23113.996509 eV Total energy + Delta-G solvation = -4112.143332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.97794 -38.16930 -37.51042 -36.65039 -36.22613 -35.35939 -34.31750 -33.48431 -31.81698 -28.53609 -28.49689 -27.52511 -25.60149 -24.89938 -24.01527 -20.93504 -20.66680 -20.17482 -19.27514 -18.28055 -17.68806 -17.40141 -16.99688 -16.82169 -16.37839 -15.92750 -15.78422 -14.86073 -14.84427 -14.51376 -14.31446 -13.87369 -13.73762 -13.61126 -13.59425 -13.22270 -13.07384 -12.89414 -12.68906 -12.65724 -12.42556 -12.26995 -12.10193 -11.94119 -11.91205 -11.75188 -11.54690 -11.21670 -10.80583 -10.65021 -10.21284 -10.10454 -10.07642 -9.81746 -9.53668 -9.48200 -8.98502 -8.49862 -7.07735 -6.19110 -3.25950 -0.17594 2.19057 2.56226 3.05502 3.45675 3.46673 3.49006 3.67029 3.76590 3.99389 4.24228 4.26029 4.40589 4.54076 4.61703 4.86446 4.94268 4.95034 5.02751 5.11352 5.12006 5.22579 5.34746 5.35883 5.36223 5.39418 5.47804 5.50894 5.51465 5.85205 5.88685 6.01173 6.27441 6.50447 6.63786 6.73749 6.81486 7.48144 7.65768 7.84342 8.17998 8.37831 8.89965 9.70091 10.21328 11.12865 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023652 B = 0.002249 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.563420 B =12446.609760 C =12984.314990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.009 6.009 3 C 0.089 3.911 4 S 2.612 3.388 5 O -0.950 6.950 6 O -0.951 6.951 7 C -0.612 4.612 8 C -0.135 4.135 9 C 0.522 3.478 10 O -0.535 6.535 11 N -0.713 5.713 12 C 0.141 3.859 13 H 0.104 0.896 14 C 0.128 3.872 15 N -0.597 5.597 16 C -0.340 4.340 17 H 0.068 0.932 18 C -0.024 4.024 19 N -0.914 5.914 20 Si 1.066 2.934 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.119 3.881 25 C 0.076 3.924 26 H 0.068 0.932 27 O -0.563 6.563 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.401 0.599 39 H 0.035 0.965 40 H 0.033 0.967 41 H 0.269 0.731 42 H 0.058 0.942 43 H 0.039 0.961 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 14.981 19.139 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.848 5.848 3 C -0.056 4.056 4 S 2.704 3.296 5 O -0.941 6.941 6 O -0.942 6.942 7 C -0.741 4.741 8 C -0.177 4.177 9 C 0.306 3.694 10 O -0.411 6.411 11 N -0.364 5.364 12 C 0.036 3.964 13 H 0.122 0.878 14 C 0.002 3.998 15 N -0.326 5.326 16 C -0.467 4.467 17 H 0.086 0.914 18 C -0.226 4.226 19 N -0.555 5.555 20 Si 0.895 3.105 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.007 4.007 25 C 0.016 3.984 26 H 0.085 0.915 27 O -0.368 6.368 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.235 0.765 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.596 14.227 18.380 23.388 hybrid contribution -0.019 0.787 0.364 0.867 sum -2.615 15.014 18.744 24.158 Atomic orbital electron populations 1.21550 0.77969 1.03263 1.02526 1.57367 1.15409 1.21826 1.90195 1.21569 0.96743 0.85031 1.02288 1.05122 0.73921 0.73148 0.77381 1.93610 1.64577 1.62410 1.73473 1.93598 1.44128 1.82927 1.73516 1.30448 1.10923 1.06092 1.26615 1.21360 1.02804 0.96482 0.97029 1.20125 0.77902 0.81056 0.90294 1.90715 1.48864 1.49061 1.52458 1.45921 1.57918 1.23978 1.08593 1.22020 0.94240 0.99226 0.80889 0.87812 1.21691 0.93762 0.90374 0.93998 1.44374 1.01254 1.33486 1.53513 1.19757 1.02006 1.12833 1.12138 0.91403 1.25829 0.99067 1.05783 0.91944 1.70799 1.36111 1.12884 1.35676 0.83506 0.75496 0.75465 0.75987 1.21004 1.21884 1.22029 1.22173 0.86879 0.98363 0.93318 1.23373 0.84225 0.91958 0.98843 0.91457 1.86450 1.19017 1.38015 1.93297 0.92163 0.90809 0.90866 0.92119 0.90099 0.91280 0.84208 0.84161 0.87181 0.87244 0.76489 0.94719 0.94883 0.91960 0.92357 0.94309 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 10.17 59.85 0.61 1.13 16 2 N -1.01 -7.18 3.52 -129.21 -0.45 -7.63 16 3 C 0.09 0.49 10.26 59.85 0.61 1.10 16 4 S 2.61 23.55 5.38 -107.50 -0.58 22.97 16 5 O -0.95 -11.16 17.09 -57.54 -0.98 -12.14 16 6 O -0.95 -11.05 17.11 -57.54 -0.98 -12.03 16 7 C -0.61 -5.26 5.47 37.15 0.20 -5.06 16 8 C -0.14 -1.29 5.71 -27.88 -0.16 -1.45 16 9 C 0.52 7.32 7.83 -10.98 -0.09 7.24 16 10 O -0.53 -9.54 15.63 5.56 0.09 -9.45 16 11 N -0.71 -10.00 5.11 -52.03 -0.27 -10.27 16 12 C 0.14 2.54 3.04 -66.09 -0.20 2.34 16 13 H 0.10 2.10 7.55 -51.93 -0.39 1.71 16 14 C 0.13 2.74 7.00 -3.06 -0.02 2.72 16 15 N -0.60 -14.96 3.29 -170.07 -0.56 -15.52 16 16 C -0.34 -9.50 10.02 -15.06 -0.15 -9.65 16 17 H 0.07 1.89 7.97 -52.48 -0.42 1.47 16 18 C -0.02 -0.68 5.09 -17.43 -0.09 -0.77 16 19 N -0.91 -27.21 12.93 55.49 0.72 -26.50 16 20 Si 1.07 24.87 30.00 -169.99 -5.10 19.77 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 C 0.12 2.66 5.03 -2.53 -0.01 2.65 16 25 C 0.08 1.32 4.06 -24.58 -0.10 1.23 16 26 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 27 O -0.56 -8.89 13.47 -35.23 -0.47 -9.37 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 30 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.28 7.79 -51.93 -0.40 -0.13 16 33 H 0.07 0.41 7.90 -51.93 -0.41 0.00 16 34 H 0.14 1.13 8.10 -51.92 -0.42 0.70 16 35 H 0.14 1.15 8.10 -51.92 -0.42 0.73 16 36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.34 8.56 -40.82 -0.35 3.99 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 41 H 0.27 8.06 6.06 -40.82 -0.25 7.82 16 42 H 0.06 1.38 7.95 -51.93 -0.41 0.96 16 43 H 0.04 0.95 6.81 -51.93 -0.35 0.60 16 44 H 0.38 4.42 9.11 45.56 0.42 4.84 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -39.01 376.86 -8.28 -47.29 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.97 Total: 5.72 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 0.61 Total: 1.48 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.56 Total: -59.92 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.36 Total: -43.00 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.10 Total: 19.77 kcal Atomic # 16 Polarization: 23.55 SS G_CDS: -0.58 Total: 22.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.01 -8.28 -47.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198976537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.939 kcal (2) G-P(sol) polarization free energy of solvation -39.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds