Wall clock time and date at job start Tue Mar 31 2020 18:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00091 * 2 1 4 4 S 1.65602 * 119.99861 * 180.02562 * 2 1 3 5 5 O 1.42093 * 104.27752 * 333.92508 * 4 2 1 6 6 O 1.42103 * 104.27297 * 206.06818 * 4 2 1 7 7 C 1.81400 * 104.45306 * 89.99827 * 4 2 1 8 8 C 1.52991 * 109.47210 * 179.97438 * 7 4 2 9 9 C 1.50708 * 109.46989 * 179.97438 * 8 7 4 10 10 O 1.21277 * 119.99823 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99848 * 180.02562 * 9 8 7 12 12 C 1.46491 * 119.99879 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.64670 * 31.85309 * 12 11 9 14 14 C 1.54335 * 110.85036 * 268.69058 * 12 11 9 15 15 N 1.47021 * 107.26526 * 219.67597 * 14 12 11 16 16 C 1.36934 * 125.64867 * 178.84756 * 15 14 12 17 17 H 1.08004 * 120.00035 * 342.88139 * 16 15 14 18 18 C 1.38812 * 120.00404 * 162.87654 * 16 15 14 19 19 N 1.31622 * 119.99728 * 331.97362 * 18 16 15 20 20 Si 1.86799 * 120.00267 * 151.97240 * 18 16 15 21 21 H 1.48506 * 109.46858 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47388 * 60.00205 * 20 18 16 23 23 H 1.48501 * 109.46953 * 300.00008 * 20 18 16 24 24 C 1.47421 * 108.70506 * 358.58056 * 15 14 12 25 25 C 1.54910 * 104.83090 * 24.35923 * 24 15 14 26 26 H 1.08994 * 111.00813 * 81.06389 * 25 24 15 27 27 O 1.42902 * 111.00509 * 204.91819 * 25 24 15 28 28 H 1.08996 * 109.46686 * 269.99424 * 1 2 3 29 29 H 1.09001 * 109.47141 * 29.99723 * 1 2 3 30 30 H 1.08998 * 109.47031 * 149.99443 * 1 2 3 31 31 H 1.08997 * 109.47806 * 239.99905 * 3 2 1 32 32 H 1.09000 * 109.47054 * 0.02562 * 3 2 1 33 33 H 1.09007 * 109.46807 * 120.00016 * 3 2 1 34 34 H 1.09007 * 109.47124 * 59.99596 * 7 4 2 35 35 H 1.09007 * 109.46915 * 300.00354 * 7 4 2 36 36 H 1.09003 * 109.47001 * 60.00411 * 8 7 4 37 37 H 1.09000 * 109.47639 * 299.99783 * 8 7 4 38 38 H 0.97000 * 120.00055 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.99582 * 100.19542 * 14 12 11 40 40 H 1.08999 * 109.77686 * 339.02724 * 14 12 11 41 41 H 0.97004 * 120.00411 * 353.95791 * 19 18 16 42 42 H 1.09000 * 110.37006 * 143.19570 * 24 15 14 43 43 H 1.09005 * 110.36937 * 265.52137 * 24 15 14 44 44 H 0.96703 * 114.00038 * 298.54291 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.3970 -2.3563 0.6042 6 8 3.5395 -1.1193 0.6047 7 6 2.5193 -1.8255 -1.7574 8 6 3.2818 -3.1450 -1.8918 9 6 3.4693 -3.4704 -3.3514 10 8 3.0352 -2.7209 -4.2003 11 7 4.1184 -4.5949 -3.7132 12 6 4.3011 -4.9109 -5.1319 13 1 4.3958 -3.9980 -5.7199 14 6 3.1368 -5.7778 -5.6559 15 7 3.7138 -6.7826 -6.5609 16 6 3.0151 -7.7602 -7.2176 17 1 2.0185 -8.0218 -6.8939 18 6 3.5876 -8.4149 -8.2995 19 7 4.4873 -7.8015 -9.0389 20 14 3.0812 -10.1664 -8.7059 21 1 3.8335 -10.6353 -9.8974 22 1 1.6247 -10.2068 -8.9921 23 1 3.3836 -11.0497 -7.5511 24 6 5.1684 -6.5594 -6.6492 25 6 5.5375 -5.8259 -5.3357 26 1 5.6422 -6.5305 -4.5108 27 8 6.7269 -5.0508 -5.4987 28 1 -0.3632 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 2.8242 1.3265 -0.8899 32 1 1.4892 2.0972 0.0005 33 1 2.8242 1.3264 0.8901 34 1 3.0866 -1.0279 -2.2372 35 1 1.5450 -1.9178 -2.2375 36 1 2.7149 -3.9428 -1.4120 37 1 4.2561 -3.0523 -1.4119 38 1 4.4652 -5.1945 -3.0341 39 1 2.4240 -5.1564 -6.1981 40 1 2.6405 -6.2725 -4.8210 41 1 4.6866 -6.8651 -8.8831 42 1 5.6951 -7.5116 -6.7129 43 1 5.4048 -5.9358 -7.5114 44 1 7.5087 -5.5729 -5.7253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198976537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:51 Heat of formation + Delta-G solvation = -156.940596 kcal Electronic energy + Delta-G solvation = -27227.644841 eV Core-core repulsion = 23113.996509 eV Total energy + Delta-G solvation = -4113.648332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24252 -39.65747 -38.30838 -37.25501 -36.92486 -36.90338 -35.78972 -34.38062 -33.61362 -30.21880 -29.14632 -28.95174 -26.74294 -25.88750 -25.27463 -22.60222 -22.08369 -21.52737 -19.95814 -19.71176 -19.04276 -18.53290 -18.04730 -17.54047 -17.48258 -17.06245 -16.70415 -16.15225 -16.00548 -15.56073 -15.47803 -15.39158 -15.27104 -14.74274 -14.66737 -14.22808 -14.17050 -14.05330 -13.64614 -13.51931 -13.34838 -13.32971 -13.27836 -13.22240 -12.67372 -12.63063 -12.55082 -12.53907 -12.52063 -12.00656 -11.90782 -11.81280 -11.72794 -11.29851 -10.99219 -10.62254 -10.27360 -10.01787 -9.14857 -8.39875 -5.44217 -0.87529 1.46341 1.56644 1.58010 1.64924 1.84639 1.94893 2.58369 2.74682 2.88249 3.08536 3.13146 3.25234 3.43689 3.57353 3.71558 3.77723 3.83424 3.91451 3.94563 4.22262 4.30524 4.37246 4.42392 4.49326 4.58092 4.69826 4.71409 4.79361 4.81562 4.86124 4.97135 4.99367 5.01055 5.03962 5.31502 5.53921 5.58126 6.21504 6.40044 6.70873 6.77911 7.10205 7.59672 8.13844 8.90800 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023652 B = 0.002249 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.563420 B =12446.609760 C =12984.314990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.010 6.010 3 C 0.078 3.922 4 S 2.633 3.367 5 O -0.979 6.979 6 O -0.978 6.978 7 C -0.608 4.608 8 C -0.138 4.138 9 C 0.519 3.481 10 O -0.577 6.577 11 N -0.703 5.703 12 C 0.155 3.845 13 H 0.078 0.922 14 C 0.129 3.871 15 N -0.618 5.618 16 C -0.352 4.352 17 H 0.063 0.937 18 C -0.075 4.075 19 N -0.941 5.941 20 Si 1.120 2.880 21 H -0.291 1.291 22 H -0.276 1.276 23 H -0.275 1.275 24 C 0.122 3.878 25 C 0.103 3.897 26 H 0.099 0.901 27 O -0.565 6.565 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.420 0.580 39 H 0.008 0.992 40 H 0.047 0.953 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.009 0.991 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 14.933 21.106 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.850 5.850 3 C -0.066 4.066 4 S 2.726 3.274 5 O -0.969 6.969 6 O -0.969 6.969 7 C -0.738 4.738 8 C -0.179 4.179 9 C 0.306 3.694 10 O -0.456 6.456 11 N -0.355 5.355 12 C 0.048 3.952 13 H 0.097 0.903 14 C 0.002 3.998 15 N -0.346 5.346 16 C -0.480 4.480 17 H 0.081 0.919 18 C -0.271 4.271 19 N -0.583 5.583 20 Si 0.943 3.057 21 H -0.217 1.217 22 H -0.202 1.202 23 H -0.200 1.200 24 C -0.005 4.005 25 C 0.042 3.958 26 H 0.117 0.883 27 O -0.373 6.373 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.258 0.742 39 H 0.026 0.974 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.027 0.973 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.605 14.184 20.418 24.997 hybrid contribution -0.049 0.918 -0.265 0.957 sum -2.654 15.102 20.153 25.323 Atomic orbital electron populations 1.21770 0.77021 1.04553 1.02990 1.57227 1.16069 1.21633 1.90038 1.21791 0.97432 0.84959 1.02452 1.04327 0.72980 0.73000 0.77043 1.93569 1.65172 1.63800 1.74407 1.93559 1.45497 1.83405 1.74401 1.30429 1.11219 1.06016 1.26094 1.21526 1.05022 0.97669 0.93640 1.20911 0.76510 0.80105 0.91890 1.90704 1.50437 1.50333 1.54150 1.45741 1.58052 1.24658 1.07074 1.21511 0.93216 0.97446 0.83009 0.90344 1.21751 0.94708 0.89877 0.93428 1.44630 1.02625 1.33913 1.53481 1.20038 1.02273 1.13510 1.12218 0.91897 1.27293 0.98833 1.09067 0.91922 1.70921 1.37964 1.12249 1.37157 0.82806 0.75859 0.71007 0.76015 1.21686 1.20210 1.20043 1.22118 0.85485 0.97574 0.95280 1.23047 0.84566 0.91551 0.96631 0.88300 1.86421 1.19245 1.38399 1.93190 0.92173 0.88458 0.90764 0.91156 0.87771 0.92031 0.83640 0.83831 0.84696 0.84471 0.74180 0.97404 0.93522 0.93563 0.94037 0.97315 0.74996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.17 127.77 1.30 2.07 16 2 N -1.01 -12.70 3.52 -562.70 -1.98 -14.68 16 3 C 0.08 0.72 10.26 127.77 1.31 2.03 16 4 S 2.63 43.46 5.38 -56.49 -0.30 43.16 16 5 O -0.98 -21.73 17.09 -127.65 -2.18 -23.91 16 6 O -0.98 -21.36 17.11 -127.65 -2.18 -23.54 16 7 C -0.61 -9.31 5.47 71.98 0.39 -8.92 16 8 C -0.14 -2.25 5.71 29.85 0.17 -2.08 16 9 C 0.52 13.67 7.83 87.66 0.69 14.35 16 10 O -0.58 -20.33 15.63 -3.02 -0.05 -20.38 16 11 N -0.70 -18.23 5.11 -436.90 -2.23 -20.46 16 12 C 0.15 5.48 3.04 46.19 0.14 5.63 16 13 H 0.08 3.22 7.55 -2.39 -0.02 3.21 16 14 C 0.13 5.54 7.00 86.73 0.61 6.15 16 15 N -0.62 -31.48 3.29 -691.97 -2.28 -33.75 16 16 C -0.35 -19.96 10.02 84.03 0.84 -19.12 16 17 H 0.06 3.54 7.97 -2.91 -0.02 3.52 16 18 C -0.08 -4.27 5.09 84.86 0.43 -3.84 16 19 N -0.94 -57.45 12.93 21.65 0.28 -57.17 16 20 Si 1.12 50.15 30.00 68.60 2.06 52.21 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 C 0.12 5.54 5.03 86.86 0.44 5.97 16 25 C 0.10 3.41 4.06 31.99 0.13 3.54 16 26 H 0.10 2.75 8.01 -2.39 -0.02 2.73 16 27 O -0.56 -16.77 13.47 -148.98 -2.01 -18.78 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.45 7.92 -2.39 -0.02 0.43 16 30 H 0.07 0.69 7.79 -2.39 -0.02 0.67 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.45 7.79 -2.39 -0.02 0.43 16 33 H 0.06 0.66 7.90 -2.38 -0.02 0.64 16 34 H 0.15 2.09 8.10 -2.39 -0.02 2.07 16 35 H 0.14 2.13 8.10 -2.39 -0.02 2.11 16 36 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.42 7.65 8.56 -92.71 -0.79 6.85 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 41 H 0.25 15.89 6.06 -92.71 -0.56 15.33 16 42 H 0.04 1.99 7.95 -2.39 -0.02 1.97 16 43 H 0.01 0.46 6.81 -2.38 -0.02 0.45 16 44 H 0.40 8.44 9.11 -74.06 -0.67 7.76 16 Total: -1.00 -86.45 376.86 -4.66 -91.11 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -0.23 Total: 20.40 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 6.45 Total: 5.79 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -6.21 Total: -126.06 kcal Atomic # 8 Polarization: -80.19 SS G_CDS: -6.42 Total: -86.61 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.06 Total: 52.21 kcal Atomic # 16 Polarization: 43.46 SS G_CDS: -0.30 Total: 43.16 kcal Total: -86.45 -4.66 -91.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198976537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.830 kcal (2) G-P(sol) polarization free energy of solvation -86.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds