Wall clock time and date at job start Tue Mar 31 2020 18:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65600 * 119.99553 * 2 1 4 4 O 1.42104 * 104.27724 * 308.92741 * 3 2 1 5 5 O 1.42105 * 104.27625 * 181.07242 * 3 2 1 6 6 C 1.81402 * 104.45290 * 64.99952 * 3 2 1 7 7 C 1.52996 * 109.47590 * 179.97438 * 6 3 2 8 8 C 1.50698 * 109.47270 * 179.97438 * 7 6 3 9 9 O 1.21281 * 119.99811 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99963 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99953 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.77693 * 31.76417 * 11 10 8 13 13 C 1.54325 * 110.72131 * 268.52482 * 11 10 8 14 14 N 1.47290 * 107.30599 * 219.45483 * 13 11 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 11 16 16 H 1.07995 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99650 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47166 * 59.99694 * 19 17 15 21 21 H 1.48493 * 109.47565 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47135 * 300.00010 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 11 24 24 C 1.54908 * 104.92961 * 24.15407 * 23 14 13 25 25 H 1.09008 * 111.00494 * 81.01141 * 24 23 14 26 26 O 1.42894 * 111.00574 * 204.85979 * 24 23 14 27 27 C 1.42904 * 114.00488 * 268.54918 * 26 24 23 28 28 H 1.09000 * 109.47450 * 299.99349 * 1 2 3 29 29 H 1.08993 * 109.47409 * 60.00417 * 1 2 3 30 30 H 1.09010 * 109.46597 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00575 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46989 * 59.99721 * 6 3 2 33 33 H 1.09005 * 109.46903 * 299.99959 * 6 3 2 34 34 H 1.09005 * 109.47029 * 59.99933 * 7 6 3 35 35 H 1.09005 * 109.47117 * 300.00015 * 7 6 3 36 36 H 0.96996 * 119.99924 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.88239 * 338.86280 * 13 11 10 38 38 H 1.08999 * 109.88411 * 100.02710 * 13 11 10 39 39 H 0.97001 * 119.99611 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 41 41 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 42 42 H 1.08995 * 109.47181 * 179.97438 * 27 26 24 43 43 H 1.09001 * 109.46698 * 300.00412 * 27 26 24 44 44 H 1.09002 * 109.46834 * 59.99448 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7187 2.1703 -1.0713 5 8 3.6606 1.0493 -0.0258 6 6 1.8763 2.1975 1.5920 7 6 2.5897 3.5454 1.7137 8 6 2.2431 4.1797 3.0360 9 8 1.4990 3.6095 3.8055 10 7 2.7607 5.3802 3.3639 11 6 2.4241 5.9965 4.6496 12 1 2.2570 5.2351 5.4114 13 6 1.1882 6.9102 4.5102 14 7 1.4323 8.1061 5.3346 15 6 0.5849 9.1735 5.4678 16 1 -0.3578 9.1837 4.9409 17 6 0.9376 10.2425 6.2800 18 7 2.0867 10.2303 6.9218 19 14 -0.2185 11.6983 6.4623 20 1 -1.5138 11.2348 7.0216 21 1 0.3858 12.6988 7.3782 22 1 -0.4472 12.3184 5.1324 23 6 2.7432 7.9622 5.9936 24 6 3.5368 6.9824 5.0937 25 1 3.9655 7.5001 4.2354 26 8 4.5508 6.3076 5.8409 27 6 5.8183 6.9674 5.8285 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.9501 -0.8400 0.0004 32 1 2.1957 1.5432 2.4033 33 1 0.7985 2.3497 1.6510 34 1 2.2707 4.1999 0.9025 35 1 3.6674 3.3928 1.6549 36 1 3.3560 5.8360 2.7486 37 1 1.0568 7.1996 3.4676 38 1 0.2999 6.3891 4.8672 39 1 2.3329 10.9772 7.4896 40 1 2.6215 7.5452 6.9933 41 1 3.2500 8.9259 6.0444 42 1 6.5328 6.3929 6.4180 43 1 6.1756 7.0486 4.8019 44 1 5.7131 7.9644 6.2565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212270510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:02 Heat of formation + Delta-G solvation = -118.269413 kcal Electronic energy + Delta-G solvation = -27312.428643 eV Core-core repulsion = 23200.457219 eV Total energy + Delta-G solvation = -4111.971424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.89858 -38.20678 -37.44536 -36.30856 -35.96945 -35.39201 -34.14369 -33.44818 -31.77462 -28.90531 -27.38777 -26.39732 -26.14993 -25.41191 -23.94643 -20.89670 -20.57053 -19.94160 -19.67469 -18.37453 -17.56257 -17.12758 -16.82220 -16.42335 -16.17166 -15.90059 -15.52287 -15.01790 -14.97619 -14.41233 -14.33529 -14.20429 -13.91977 -13.66196 -13.25217 -13.22978 -12.90374 -12.82029 -12.44161 -12.33747 -12.29244 -12.03467 -11.95632 -11.79907 -11.47835 -11.33056 -11.21112 -11.05616 -10.86263 -10.84170 -10.26495 -10.05160 -9.94180 -9.86553 -9.82187 -9.14856 -8.76165 -8.73728 -6.95169 -5.73645 -3.17051 -0.12332 2.32956 2.62713 3.11690 3.36729 3.40998 3.42166 3.46594 3.87208 4.05295 4.07918 4.44527 4.46884 4.55362 4.66616 4.99648 5.02653 5.12167 5.18011 5.29509 5.32902 5.38420 5.47535 5.48645 5.57744 5.63564 5.64588 5.80647 5.93899 6.01905 6.15078 6.38788 6.48839 6.60157 6.81478 7.20351 7.49252 7.56709 7.68446 7.74803 8.20967 8.26513 9.11453 9.71673 10.34232 11.30026 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002471 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.460494 B =11330.476570 C =12388.895135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.615 3.385 4 O -0.953 6.953 5 O -0.957 6.957 6 C -0.610 4.610 7 C -0.136 4.136 8 C 0.521 3.479 9 O -0.536 6.536 10 N -0.714 5.714 11 C 0.135 3.865 12 H 0.104 0.896 13 C 0.130 3.870 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.918 3.082 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.139 3.861 24 C 0.054 3.946 25 H 0.067 0.933 26 O -0.382 6.382 27 C 0.035 3.965 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.418 0.582 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.400 0.600 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.254 0.746 40 H 0.026 0.974 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -17.748 -12.562 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.706 3.294 4 O -0.943 6.943 5 O -0.948 6.948 6 C -0.740 4.740 7 C -0.177 4.177 8 C 0.306 3.694 9 O -0.412 6.412 10 N -0.364 5.364 11 C 0.031 3.969 12 H 0.122 0.878 13 C 0.002 3.998 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.749 3.251 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.013 3.987 24 C -0.006 4.006 25 H 0.085 0.915 26 O -0.300 6.300 27 C -0.062 4.062 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.252 0.748 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.234 0.766 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.163 -17.658 -12.485 21.856 hybrid contribution -0.416 0.777 0.441 0.985 sum 2.747 -16.881 -12.044 20.919 Atomic orbital electron populations 1.21545 0.78566 1.04393 1.02208 1.55357 1.16099 1.24564 1.92228 1.04922 0.73696 0.73948 0.76831 1.93615 1.78783 1.72265 1.49668 1.93617 1.32668 1.81220 1.87264 1.30385 1.12008 1.07667 1.23938 1.21363 1.02663 0.94886 0.98828 1.20103 0.80428 0.81161 0.87736 1.90710 1.36047 1.62704 1.51774 1.45984 1.49655 1.20106 1.20656 1.22164 0.95009 0.95350 0.84402 0.87760 1.21659 0.94508 0.88135 0.95449 1.44351 1.18633 1.16804 1.53048 1.19044 0.98591 0.94017 1.23549 0.90227 1.24810 0.97728 0.98825 0.99175 1.69738 1.21649 1.31864 1.33921 0.86095 0.79741 0.81792 0.77514 1.21095 1.21514 1.21080 1.22335 0.85639 0.98485 0.92224 1.24032 0.88026 0.93287 0.95210 0.91514 1.87839 1.19529 1.49366 1.73255 1.22702 0.85304 0.98130 1.00062 0.91930 0.91221 0.89917 0.74829 0.83991 0.84149 0.87183 0.87269 0.76616 0.95122 0.94837 0.93510 0.95579 0.86954 0.90310 0.94757 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.03 59.85 0.66 1.02 16 2 N -1.12 -6.49 6.08 -16.63 -0.10 -6.59 16 3 S 2.61 21.52 5.46 -107.50 -0.59 20.93 16 4 O -0.95 -10.92 17.73 -57.54 -1.02 -11.94 16 5 O -0.96 -10.70 18.08 -57.54 -1.04 -11.74 16 6 C -0.61 -4.90 5.31 37.16 0.20 -4.70 16 7 C -0.14 -1.25 5.71 -27.89 -0.16 -1.41 16 8 C 0.52 7.18 7.83 -10.98 -0.09 7.10 16 9 O -0.54 -9.34 15.63 5.56 0.09 -9.26 16 10 N -0.71 -10.03 5.10 -52.03 -0.27 -10.29 16 11 C 0.14 2.47 3.05 -66.10 -0.20 2.27 16 12 H 0.10 2.11 7.55 -51.93 -0.39 1.72 16 13 C 0.13 2.74 7.01 -2.92 -0.02 2.72 16 14 N -0.60 -15.18 3.40 -169.86 -0.58 -15.75 16 15 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 19 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.14 3.32 5.62 -2.53 -0.01 3.31 16 24 C 0.05 1.01 3.12 -24.58 -0.08 0.93 16 25 H 0.07 1.15 7.77 -51.92 -0.40 0.75 16 26 O -0.38 -6.84 10.51 -35.23 -0.37 -7.21 16 27 C 0.03 0.49 10.89 101.05 1.10 1.59 16 28 H 0.06 0.23 7.73 -51.93 -0.40 -0.17 16 29 H 0.07 0.35 8.04 -51.93 -0.42 -0.06 16 30 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 31 H 0.42 1.74 8.92 -34.47 -0.31 1.44 16 32 H 0.14 1.06 8.10 -51.92 -0.42 0.64 16 33 H 0.14 1.04 7.73 -51.92 -0.40 0.64 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 4.40 8.56 -40.82 -0.35 4.05 16 37 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.11 2.96 5.86 -51.93 -0.30 2.65 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -37.61 377.84 -8.24 -45.84 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.74 Total: 3.20 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 1.15 Total: 6.16 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.39 Total: -58.34 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -2.34 Total: -40.15 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 21.52 SS G_CDS: -0.59 Total: 20.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.61 -8.24 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212270510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.426 kcal (2) G-P(sol) polarization free energy of solvation -37.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds