Wall clock time and date at job start Tue Mar 31 2020 18:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65600 * 119.99553 * 2 1 4 4 O 1.42104 * 104.27724 * 308.92741 * 3 2 1 5 5 O 1.42105 * 104.27625 * 181.07242 * 3 2 1 6 6 C 1.81402 * 104.45290 * 64.99952 * 3 2 1 7 7 C 1.52996 * 109.47590 * 179.97438 * 6 3 2 8 8 C 1.50698 * 109.47270 * 179.97438 * 7 6 3 9 9 O 1.21281 * 119.99811 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99963 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99953 * 180.02562 * 10 8 7 12 12 H 1.08997 * 110.77693 * 31.76417 * 11 10 8 13 13 C 1.54325 * 110.72131 * 268.52482 * 11 10 8 14 14 N 1.47290 * 107.30599 * 219.45483 * 13 11 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 11 16 16 H 1.07995 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99650 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00025 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47166 * 59.99694 * 19 17 15 21 21 H 1.48493 * 109.47565 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47135 * 300.00010 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 11 24 24 C 1.54908 * 104.92961 * 24.15407 * 23 14 13 25 25 H 1.09008 * 111.00494 * 81.01141 * 24 23 14 26 26 O 1.42894 * 111.00574 * 204.85979 * 24 23 14 27 27 C 1.42904 * 114.00488 * 268.54918 * 26 24 23 28 28 H 1.09000 * 109.47450 * 299.99349 * 1 2 3 29 29 H 1.08993 * 109.47409 * 60.00417 * 1 2 3 30 30 H 1.09010 * 109.46597 * 180.02562 * 1 2 3 31 31 H 0.96996 * 120.00575 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46989 * 59.99721 * 6 3 2 33 33 H 1.09005 * 109.46903 * 299.99959 * 6 3 2 34 34 H 1.09005 * 109.47029 * 59.99933 * 7 6 3 35 35 H 1.09005 * 109.47117 * 300.00015 * 7 6 3 36 36 H 0.96996 * 119.99924 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.88239 * 338.86280 * 13 11 10 38 38 H 1.08999 * 109.88411 * 100.02710 * 13 11 10 39 39 H 0.97001 * 119.99611 * 180.02562 * 18 17 15 40 40 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 41 41 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 42 42 H 1.08995 * 109.47181 * 179.97438 * 27 26 24 43 43 H 1.09001 * 109.46698 * 300.00412 * 27 26 24 44 44 H 1.09002 * 109.46834 * 59.99448 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7187 2.1703 -1.0713 5 8 3.6606 1.0493 -0.0258 6 6 1.8763 2.1975 1.5920 7 6 2.5897 3.5454 1.7137 8 6 2.2431 4.1797 3.0360 9 8 1.4990 3.6095 3.8055 10 7 2.7607 5.3802 3.3639 11 6 2.4241 5.9965 4.6496 12 1 2.2570 5.2351 5.4114 13 6 1.1882 6.9102 4.5102 14 7 1.4323 8.1061 5.3346 15 6 0.5849 9.1735 5.4678 16 1 -0.3578 9.1837 4.9409 17 6 0.9376 10.2425 6.2800 18 7 2.0867 10.2303 6.9218 19 14 -0.2185 11.6983 6.4623 20 1 -1.5138 11.2348 7.0216 21 1 0.3858 12.6988 7.3782 22 1 -0.4472 12.3184 5.1324 23 6 2.7432 7.9622 5.9936 24 6 3.5368 6.9824 5.0937 25 1 3.9655 7.5001 4.2354 26 8 4.5508 6.3076 5.8409 27 6 5.8183 6.9674 5.8285 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.9501 -0.8400 0.0004 32 1 2.1957 1.5432 2.4033 33 1 0.7985 2.3497 1.6510 34 1 2.2707 4.1999 0.9025 35 1 3.6674 3.3928 1.6549 36 1 3.3560 5.8360 2.7486 37 1 1.0568 7.1996 3.4676 38 1 0.2999 6.3891 4.8672 39 1 2.3329 10.9772 7.4896 40 1 2.6215 7.5452 6.9933 41 1 3.2500 8.9259 6.0444 42 1 6.5328 6.3929 6.4180 43 1 6.1756 7.0486 4.8019 44 1 5.7131 7.9644 6.2565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212270510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:00 Heat of formation + Delta-G solvation = -151.146765 kcal Electronic energy + Delta-G solvation = -27313.854312 eV Core-core repulsion = 23200.457219 eV Total energy + Delta-G solvation = -4113.397093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.15318 -39.66008 -38.20600 -37.52476 -37.07233 -35.85314 -35.65770 -34.31017 -33.55762 -30.61425 -28.98741 -27.56758 -26.79040 -26.63722 -25.43075 -22.46667 -22.02475 -21.35827 -20.30813 -19.30394 -18.92036 -18.31431 -17.89107 -17.40722 -17.32238 -16.92300 -16.72548 -16.50994 -15.87009 -15.72801 -15.69143 -15.33024 -14.99033 -14.83785 -14.49670 -14.38785 -13.94530 -13.76036 -13.72198 -13.52360 -13.23818 -13.18618 -13.12559 -13.00795 -12.70344 -12.60714 -12.55745 -12.43579 -12.35663 -12.10094 -11.95828 -11.89619 -11.55002 -11.09112 -10.79887 -10.58536 -10.43864 -10.14035 -8.98439 -7.81581 -5.28990 -0.77817 1.46966 1.50250 1.55148 1.56770 1.74743 2.04406 2.44562 2.72529 2.77648 3.23739 3.29279 3.33123 3.57829 3.68478 3.84111 3.90794 3.97521 4.07062 4.23139 4.34082 4.39385 4.46015 4.51408 4.60402 4.66019 4.67061 4.82384 4.83968 4.88360 4.92809 4.95254 5.04275 5.27968 5.42540 5.43467 5.67462 6.12334 6.17773 6.29706 6.48580 7.03323 7.18100 7.68174 8.30776 9.19543 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002471 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.460494 B =11330.476570 C =12388.895135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.117 6.117 3 S 2.642 3.358 4 O -0.986 6.986 5 O -0.987 6.987 6 C -0.608 4.608 7 C -0.139 4.139 8 C 0.520 3.480 9 O -0.576 6.576 10 N -0.704 5.704 11 C 0.152 3.848 12 H 0.082 0.918 13 C 0.130 3.870 14 N -0.620 5.620 15 C -0.244 4.244 16 H 0.084 0.916 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.984 3.016 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.273 1.273 23 C 0.144 3.856 24 C 0.075 3.925 25 H 0.090 0.910 26 O -0.396 6.396 27 C 0.027 3.973 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.426 0.574 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.418 0.582 37 H 0.045 0.955 38 H 0.018 0.982 39 H 0.250 0.750 40 H -0.013 1.013 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -18.573 -14.271 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.879 5.879 3 S 2.734 3.266 4 O -0.976 6.976 5 O -0.977 6.977 6 C -0.738 4.738 7 C -0.180 4.180 8 C 0.306 3.694 9 O -0.455 6.455 10 N -0.357 5.357 11 C 0.046 3.954 12 H 0.100 0.900 13 C 0.003 3.997 14 N -0.348 5.348 15 C -0.372 4.372 16 H 0.101 0.899 17 C -0.255 4.255 18 N -0.597 5.597 19 Si 0.812 3.188 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.198 1.198 23 C 0.018 3.982 24 C 0.016 3.984 25 H 0.108 0.892 26 O -0.314 6.314 27 C -0.069 4.069 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.262 0.738 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.255 0.745 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.005 0.995 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.539 -18.512 -14.249 23.627 hybrid contribution -0.545 0.964 1.019 1.505 sum 2.994 -17.548 -13.230 22.180 Atomic orbital electron populations 1.21780 0.77571 1.06035 1.02441 1.55113 1.16736 1.24084 1.91964 1.03959 0.72690 0.73800 0.76189 1.93575 1.79198 1.73427 1.51362 1.93574 1.34687 1.81767 1.87675 1.30376 1.12442 1.07275 1.23700 1.21524 1.04646 0.95411 0.96379 1.20880 0.79225 0.80455 0.88798 1.90699 1.37770 1.63591 1.53416 1.45795 1.50077 1.20428 1.19352 1.21619 0.93517 0.94161 0.86102 0.89978 1.21755 0.95449 0.87204 0.95268 1.44606 1.19016 1.17593 1.53537 1.19420 0.99220 0.94886 1.23702 0.89868 1.25659 0.99321 1.01423 0.99109 1.69986 1.23088 1.32286 1.34345 0.85073 0.77688 0.78383 0.77675 1.20726 1.21793 1.19846 1.22090 0.85989 0.98437 0.91733 1.23633 0.88062 0.92233 0.94495 0.89186 1.87831 1.20693 1.49528 1.73350 1.22966 0.84028 0.97622 1.02246 0.90918 0.91876 0.87678 0.73776 0.83354 0.83533 0.84734 0.84579 0.74453 0.93659 0.96404 0.94044 0.99505 0.89537 0.87851 0.92007 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.03 127.77 1.41 1.89 16 2 N -1.12 -10.81 6.08 -206.53 -1.25 -12.06 16 3 S 2.64 38.69 5.46 -56.49 -0.31 38.38 16 4 O -0.99 -21.08 17.73 -127.65 -2.26 -23.34 16 5 O -0.99 -20.39 18.08 -127.65 -2.31 -22.70 16 6 C -0.61 -8.39 5.31 71.98 0.38 -8.01 16 7 C -0.14 -2.15 5.71 29.85 0.17 -1.98 16 8 C 0.52 13.31 7.83 87.66 0.69 14.00 16 9 O -0.58 -19.59 15.63 -3.03 -0.05 -19.64 16 10 N -0.70 -18.38 5.10 -436.92 -2.23 -20.61 16 11 C 0.15 5.51 3.05 46.18 0.14 5.65 16 12 H 0.08 3.37 7.55 -2.39 -0.02 3.36 16 13 C 0.13 5.51 7.01 86.68 0.61 6.12 16 14 N -0.62 -32.02 3.40 -691.31 -2.35 -34.37 16 15 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 18 N -0.95 -55.44 10.09 21.65 0.22 -55.22 16 19 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 C 0.14 7.10 5.62 86.85 0.49 7.58 16 24 C 0.08 2.79 3.12 31.98 0.10 2.89 16 25 H 0.09 2.92 7.77 -2.38 -0.02 2.90 16 26 O -0.40 -13.83 10.51 -148.98 -1.57 -15.40 16 27 C 0.03 0.72 10.89 113.37 1.23 1.96 16 28 H 0.07 0.38 7.73 -2.39 -0.02 0.36 16 29 H 0.06 0.55 8.04 -2.39 -0.02 0.53 16 30 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.43 2.75 8.92 -96.75 -0.86 1.89 16 32 H 0.15 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.15 1.87 7.73 -2.39 -0.02 1.86 16 34 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.42 7.89 8.56 -92.71 -0.79 7.09 16 37 H 0.05 1.79 8.03 -2.38 -0.02 1.78 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.09 4.73 5.86 -2.39 -0.01 4.72 16 42 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -83.34 377.84 -4.17 -87.50 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -0.63 Total: 16.14 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.55 Total: 14.36 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -5.62 Total: -122.26 kcal Atomic # 8 Polarization: -74.89 SS G_CDS: -6.19 Total: -81.07 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 38.69 SS G_CDS: -0.31 Total: 38.38 kcal Total: -83.34 -4.17 -87.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212270510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.642 kcal (2) G-P(sol) polarization free energy of solvation -83.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds