Wall clock time and date at job start Tue Mar 31 2020 18:55:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42893 * 114.00450 * 2 1
4 4 H 1.08996 * 110.78054 * 26.76617 * 3 2 1
5 5 C 1.54325 * 110.72645 * 263.52444 * 3 2 1
6 6 N 1.47019 * 107.27485 * 219.44409 * 5 3 2
7 7 C 1.36934 * 125.64982 * 178.89090 * 6 5 3
8 8 H 1.07999 * 120.00307 * 180.02562 * 7 6 5
9 9 C 1.38811 * 119.99726 * 0.02969 * 7 6 5
10 10 N 1.31615 * 120.00460 * 359.97438 * 9 7 6
11 11 Si 1.86809 * 119.99747 * 179.97438 * 9 7 6
12 12 H 1.48495 * 109.47207 * 89.99937 * 11 9 7
13 13 H 1.48507 * 109.46863 * 209.99591 * 11 9 7
14 14 H 1.48492 * 109.46973 * 329.99519 * 11 9 7
15 15 C 1.47423 * 108.70154 * 358.93746 * 6 5 3
16 16 C 1.54913 * 104.83633 * 24.13222 * 15 6 5
17 17 H 1.08998 * 111.03762 * 81.07178 * 16 15 6
18 18 N 1.46496 * 111.00510 * 204.91897 * 16 15 6
19 19 C 1.34774 * 119.99544 * 267.19114 * 18 16 15
20 20 O 1.21279 * 120.00472 * 0.02562 * 19 18 16
21 21 C 1.50706 * 120.00020 * 180.02562 * 19 18 16
22 22 S 1.81400 * 109.47256 * 180.02562 * 21 19 18
23 23 O 1.42099 * 110.53958 * 291.62078 * 22 21 19
24 24 O 1.42095 * 110.54467 * 68.37114 * 22 21 19
25 25 N 1.65598 * 104.44743 * 179.97438 * 22 21 19
26 26 C 1.46504 * 120.00003 * 90.00116 * 25 22 21
27 27 C 1.46501 * 119.99898 * 269.99649 * 25 22 21
28 28 H 1.08995 * 109.47975 * 179.97438 * 1 2 3
29 29 H 1.09004 * 109.46734 * 300.00024 * 1 2 3
30 30 H 1.08998 * 109.47035 * 59.99465 * 1 2 3
31 31 H 1.08998 * 109.87759 * 338.86326 * 5 3 2
32 32 H 1.09002 * 109.88213 * 99.86526 * 5 3 2
33 33 H 0.96998 * 120.00662 * 180.02562 * 10 9 7
34 34 H 1.09007 * 110.36915 * 265.29076 * 15 6 5
35 35 H 1.09007 * 110.36905 * 142.96726 * 15 6 5
36 36 H 0.96994 * 120.00700 * 87.19234 * 18 16 15
37 37 H 1.09001 * 109.46953 * 299.99667 * 21 19 18
38 38 H 1.09000 * 109.47318 * 59.99264 * 21 19 18
39 39 H 1.08999 * 109.47166 * 89.99898 * 26 25 22
40 40 H 1.09002 * 109.46798 * 209.99675 * 26 25 22
41 41 H 1.08999 * 109.46823 * 329.99588 * 26 25 22
42 42 H 1.08990 * 109.47231 * 90.00338 * 27 25 22
43 43 H 1.09000 * 109.46780 * 210.00548 * 27 25 22
44 44 H 1.09000 * 109.47066 * 329.99858 * 27 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3364 2.0288 0.4589
5 6 2.3811 1.7381 -1.4342
6 7 3.6686 2.4438 -1.3581
7 6 4.3549 2.9689 -2.4203
8 1 5.2975 3.4709 -2.2593
9 6 3.8390 2.8560 -3.7041
10 7 2.6906 2.2438 -3.9004
11 14 4.7750 3.5729 -5.1531
12 1 5.6987 2.5479 -5.7017
13 1 3.8140 3.9878 -6.2066
14 1 5.5559 4.7530 -4.7029
15 6 4.0989 2.4916 0.0512
16 6 3.3817 1.2956 0.7257
17 1 3.9155 0.3637 0.5394
18 7 3.2168 1.5249 2.1631
19 6 4.1463 1.0736 3.0284
20 8 5.1195 0.4780 2.6171
21 6 3.9766 1.3090 4.5073
22 16 5.3820 0.5885 5.3996
23 8 5.3491 -0.8298 5.3198
24 8 6.5735 1.3105 5.1196
25 7 5.0716 0.9159 6.9929
26 6 4.3062 -0.0368 7.8008
27 6 5.5624 2.1583 7.5945
28 1 -0.3635 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 2.4768 0.8602 -2.0731
32 1 1.6140 2.4031 -1.8308
33 1 2.3302 2.1646 -4.7975
34 1 3.7873 3.4294 0.5114
35 1 5.1803 2.3743 0.1219
36 1 2.4388 2.0015 2.4922
37 1 3.9338 2.3806 4.7020
38 1 3.0522 0.8411 4.8459
39 1 4.9882 -0.7469 8.2684
40 1 3.7562 0.5012 8.5730
41 1 3.6046 -0.5734 7.1621
42 1 4.8123 2.9402 7.4766
43 1 5.7553 1.9968 8.6551
44 1 6.4848 2.4620 7.0996
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001213796659.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:51
Heat of formation + Delta-G solvation = -103.117381 kcal
Electronic energy + Delta-G solvation = -27862.777588 eV
Core-core repulsion = 23751.463205 eV
Total energy + Delta-G solvation = -4111.314382 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.139 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-39.99997 -38.28201 -37.31524 -36.59331 -36.04067 -35.94059 -34.28130 -32.03441
-30.62285 -28.71812 -28.50563 -27.03904 -26.16787 -25.05698 -24.25083 -21.33207
-20.65657 -20.14271 -19.13777 -18.20159 -17.54046 -16.93158 -16.76705 -16.65762
-16.22805 -15.60111 -15.52462 -14.92268 -14.67401 -14.59022 -14.51583 -14.25641
-13.88016 -13.33819 -13.33272 -13.15236 -13.00077 -12.78674 -12.67583 -12.30547
-12.18912 -11.95061 -11.88029 -11.81670 -11.66901 -11.35598 -11.28032 -11.05251
-10.83038 -10.80896 -10.37260 -10.12841 -10.04909 -9.83262 -9.50941 -9.27892
-8.88495 -8.63697 -6.92903 -5.75953 -3.11365 -0.11143 2.35917 2.36809
2.94290 3.40283 3.45373 3.46764 3.67657 3.87798 4.06355 4.16952
4.42256 4.50463 4.52054 4.81203 4.90194 4.96401 5.03861 5.15407
5.29633 5.37110 5.41152 5.44681 5.50863 5.50950 5.57068 5.64179
5.76660 5.85937 5.96035 6.06034 6.06789 6.35404 6.55944 6.70110
7.17817 7.33927 7.44322 7.67355 7.81723 7.99043 8.17378 9.14595
9.74509 10.36811 11.35528
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.018349 B = 0.002831 C = 0.002560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1525.629940 B = 9886.519732 C =10936.141751
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.377 6.377
3 C 0.056 3.944
4 H 0.064 0.936
5 C 0.165 3.835
6 N -0.599 5.599
7 C -0.230 4.230
8 H 0.082 0.918
9 C -0.007 4.007
10 N -0.923 5.923
11 Si 0.916 3.084
12 H -0.287 1.287
13 H -0.290 1.290
14 H -0.280 1.280
15 C 0.129 3.871
16 C 0.125 3.875
17 H 0.113 0.887
18 N -0.700 5.700
19 C 0.541 3.459
20 O -0.532 6.532
21 C -0.675 4.675
22 S 2.644 3.356
23 O -0.935 6.935
24 O -0.935 6.935
25 N -1.012 6.012
26 C 0.091 3.909
27 C 0.079 3.921
28 H 0.080 0.920
29 H 0.032 0.968
30 H 0.046 0.954
31 H 0.064 0.936
32 H 0.050 0.950
33 H 0.254 0.746
34 H 0.024 0.976
35 H 0.053 0.947
36 H 0.400 0.600
37 H 0.159 0.841
38 H 0.157 0.843
39 H 0.061 0.939
40 H 0.072 0.928
41 H 0.072 0.928
42 H 0.055 0.945
43 H 0.077 0.923
44 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.070 -0.253 24.966 25.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.295 6.295
3 C -0.003 4.003
4 H 0.082 0.918
5 C 0.039 3.961
6 N -0.327 5.327
7 C -0.358 4.358
8 H 0.100 0.900
9 C -0.203 4.203
10 N -0.570 5.570
11 Si 0.746 3.254
12 H -0.214 1.214
13 H -0.217 1.217
14 H -0.206 1.206
15 C 0.002 3.998
16 C 0.020 3.980
17 H 0.131 0.869
18 N -0.350 5.350
19 C 0.325 3.675
20 O -0.409 6.409
21 C -0.802 4.802
22 S 2.731 3.269
23 O -0.925 6.925
24 O -0.925 6.925
25 N -0.852 5.852
26 C -0.054 4.054
27 C -0.066 4.066
28 H 0.099 0.901
29 H 0.051 0.949
30 H 0.064 0.936
31 H 0.082 0.918
32 H 0.068 0.932
33 H 0.064 0.936
34 H 0.042 0.958
35 H 0.072 0.928
36 H 0.235 0.765
37 H 0.177 0.823
38 H 0.175 0.825
39 H 0.080 0.920
40 H 0.091 0.909
41 H 0.091 0.909
42 H 0.074 0.926
43 H 0.095 0.905
44 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -3.589 -1.270 24.094 24.393
hybrid contribution -1.134 1.299 -0.532 1.804
sum -4.723 0.029 23.561 24.030
Atomic orbital electron populations
1.22717 0.81666 1.02161 0.99726 1.87922 1.19140 1.27445 1.95030
1.23858 0.92723 0.84170 0.99584 0.91819 1.21571 0.88280 0.97377
0.88846 1.44247 1.21334 1.66545 1.00591 1.19088 1.02387 1.29661
0.84644 0.90036 1.24826 0.97402 1.00625 0.97430 1.69928 1.19176
1.47212 1.20682 0.86061 0.78622 0.78612 0.82122 1.21425 1.21665
1.20606 1.21842 0.98014 0.93597 0.86372 1.22612 0.96968 1.01700
0.76679 0.86948 1.45795 1.24434 1.57371 1.07354 1.19074 0.83549
0.79225 0.85702 1.90881 1.29563 1.41413 1.79058 1.31167 1.25914
1.16590 1.06566 1.04370 0.75391 0.74772 0.72358 1.93594 1.86317
1.27449 1.85101 1.93583 1.40643 1.74887 1.83348 1.57604 1.69641
1.29878 1.28067 1.21518 0.95683 0.91963 0.96259 1.21657 1.00226
0.84399 1.00341 0.90137 0.94900 0.93568 0.91805 0.93214 0.93613
0.95794 0.92822 0.76542 0.82349 0.82495 0.91994 0.90886 0.90928
0.92641 0.90461 0.89455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 10.85 101.05 1.10 1.56 16
2 O -0.38 -6.83 10.43 -35.23 -0.37 -7.20 16
3 C 0.06 1.03 3.09 -24.89 -0.08 0.95 16
4 H 0.06 1.00 7.69 -51.93 -0.40 0.60 16
5 C 0.16 3.95 5.15 -3.07 -0.02 3.94 16
6 N -0.60 -15.36 3.39 -170.07 -0.58 -15.93 16
7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.59 16
8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16
9 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16
10 N -0.92 -26.89 10.31 55.49 0.57 -26.32 16
11 Si 0.92 22.19 29.55 -169.99 -5.02 17.16 16
12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
15 C 0.13 2.74 6.93 -2.53 -0.02 2.72 16
16 C 0.13 2.34 3.15 -65.78 -0.21 2.13 16
17 H 0.11 2.41 7.54 -51.93 -0.39 2.01 16
18 N -0.70 -9.85 5.20 -51.72 -0.27 -10.12 16
19 C 0.54 8.04 7.85 -10.98 -0.09 7.95 16
20 O -0.53 -10.46 15.51 5.56 0.09 -10.37 16
21 C -0.67 -6.08 6.66 36.01 0.24 -5.84 16
22 S 2.64 31.49 4.51 -107.50 -0.49 31.01 16
23 O -0.93 -14.35 17.09 -57.55 -0.98 -15.34 16
24 O -0.93 -14.38 16.57 -57.55 -0.95 -15.34 16
25 N -1.01 -7.70 3.52 -129.20 -0.45 -8.16 16
26 C 0.09 0.50 10.20 59.85 0.61 1.11 16
27 C 0.08 0.44 10.64 59.85 0.64 1.08 16
28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16
30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
31 H 0.06 1.75 7.29 -51.93 -0.38 1.37 16
32 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16
33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
34 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16
35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16
36 H 0.40 4.06 8.57 -40.82 -0.35 3.71 16
37 H 0.16 0.86 8.14 -51.92 -0.42 0.44 16
38 H 0.16 0.83 8.14 -51.92 -0.42 0.41 16
39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16
41 H 0.07 0.36 7.79 -51.93 -0.40 -0.05 16
42 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16
43 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16
44 H 0.09 0.60 6.91 -51.93 -0.36 0.24 16
LS Contribution 376.51 15.07 5.67 5.67
Total: -1.00 -38.79 376.51 -7.71 -46.51
By element:
Atomic # 1 Polarization: 6.54 SS G_CDS: -6.86 Total: -0.32 kcal
Atomic # 6 Polarization: 6.80 SS G_CDS: 1.93 Total: 8.73 kcal
Atomic # 7 Polarization: -59.80 SS G_CDS: -0.73 Total: -60.53 kcal
Atomic # 8 Polarization: -46.02 SS G_CDS: -2.22 Total: -48.24 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal
Atomic # 16 Polarization: 31.49 SS G_CDS: -0.49 Total: 31.01 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -38.79 -7.71 -46.51 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001213796659.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.611 kcal
(2) G-P(sol) polarization free energy of solvation -38.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.405 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds