Wall clock time and date at job start Tue Mar 31 2020 18:55:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42893 * 114.00450 * 2 1
4 4 H 1.08996 * 110.78054 * 26.76617 * 3 2 1
5 5 C 1.54325 * 110.72645 * 263.52444 * 3 2 1
6 6 N 1.47019 * 107.27485 * 219.44409 * 5 3 2
7 7 C 1.36934 * 125.64982 * 178.89090 * 6 5 3
8 8 H 1.07999 * 120.00307 * 180.02562 * 7 6 5
9 9 C 1.38811 * 119.99726 * 0.02969 * 7 6 5
10 10 N 1.31615 * 120.00460 * 359.97438 * 9 7 6
11 11 Si 1.86809 * 119.99747 * 179.97438 * 9 7 6
12 12 H 1.48495 * 109.47207 * 89.99937 * 11 9 7
13 13 H 1.48507 * 109.46863 * 209.99591 * 11 9 7
14 14 H 1.48492 * 109.46973 * 329.99519 * 11 9 7
15 15 C 1.47423 * 108.70154 * 358.93746 * 6 5 3
16 16 C 1.54913 * 104.83633 * 24.13222 * 15 6 5
17 17 H 1.08998 * 111.03762 * 81.07178 * 16 15 6
18 18 N 1.46496 * 111.00510 * 204.91897 * 16 15 6
19 19 C 1.34774 * 119.99544 * 267.19114 * 18 16 15
20 20 O 1.21279 * 120.00472 * 0.02562 * 19 18 16
21 21 C 1.50706 * 120.00020 * 180.02562 * 19 18 16
22 22 S 1.81400 * 109.47256 * 180.02562 * 21 19 18
23 23 O 1.42099 * 110.53958 * 291.62078 * 22 21 19
24 24 O 1.42095 * 110.54467 * 68.37114 * 22 21 19
25 25 N 1.65598 * 104.44743 * 179.97438 * 22 21 19
26 26 C 1.46504 * 120.00003 * 90.00116 * 25 22 21
27 27 C 1.46501 * 119.99898 * 269.99649 * 25 22 21
28 28 H 1.08995 * 109.47975 * 179.97438 * 1 2 3
29 29 H 1.09004 * 109.46734 * 300.00024 * 1 2 3
30 30 H 1.08998 * 109.47035 * 59.99465 * 1 2 3
31 31 H 1.08998 * 109.87759 * 338.86326 * 5 3 2
32 32 H 1.09002 * 109.88213 * 99.86526 * 5 3 2
33 33 H 0.96998 * 120.00662 * 180.02562 * 10 9 7
34 34 H 1.09007 * 110.36915 * 265.29076 * 15 6 5
35 35 H 1.09007 * 110.36905 * 142.96726 * 15 6 5
36 36 H 0.96994 * 120.00700 * 87.19234 * 18 16 15
37 37 H 1.09001 * 109.46953 * 299.99667 * 21 19 18
38 38 H 1.09000 * 109.47318 * 59.99264 * 21 19 18
39 39 H 1.08999 * 109.47166 * 89.99898 * 26 25 22
40 40 H 1.09002 * 109.46798 * 209.99675 * 26 25 22
41 41 H 1.08999 * 109.46823 * 329.99588 * 26 25 22
42 42 H 1.08990 * 109.47231 * 90.00338 * 27 25 22
43 43 H 1.09000 * 109.46780 * 210.00548 * 27 25 22
44 44 H 1.09000 * 109.47066 * 329.99858 * 27 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3364 2.0288 0.4589
5 6 2.3811 1.7381 -1.4342
6 7 3.6686 2.4438 -1.3581
7 6 4.3549 2.9689 -2.4203
8 1 5.2975 3.4709 -2.2593
9 6 3.8390 2.8560 -3.7041
10 7 2.6906 2.2438 -3.9004
11 14 4.7750 3.5729 -5.1531
12 1 5.6987 2.5479 -5.7017
13 1 3.8140 3.9878 -6.2066
14 1 5.5559 4.7530 -4.7029
15 6 4.0989 2.4916 0.0512
16 6 3.3817 1.2956 0.7257
17 1 3.9155 0.3637 0.5394
18 7 3.2168 1.5249 2.1631
19 6 4.1463 1.0736 3.0284
20 8 5.1195 0.4780 2.6171
21 6 3.9766 1.3090 4.5073
22 16 5.3820 0.5885 5.3996
23 8 5.3491 -0.8298 5.3198
24 8 6.5735 1.3105 5.1196
25 7 5.0716 0.9159 6.9929
26 6 4.3062 -0.0368 7.8008
27 6 5.5624 2.1583 7.5945
28 1 -0.3635 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 2.4768 0.8602 -2.0731
32 1 1.6140 2.4031 -1.8308
33 1 2.3302 2.1646 -4.7975
34 1 3.7873 3.4294 0.5114
35 1 5.1803 2.3743 0.1219
36 1 2.4388 2.0015 2.4922
37 1 3.9338 2.3806 4.7020
38 1 3.0522 0.8411 4.8459
39 1 4.9882 -0.7469 8.2684
40 1 3.7562 0.5012 8.5730
41 1 3.6046 -0.5734 7.1621
42 1 4.8123 2.9402 7.4766
43 1 5.7553 1.9968 8.6551
44 1 6.4848 2.4620 7.0996
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001213796659.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:50
Heat of formation + Delta-G solvation = -137.532701 kcal
Electronic energy + Delta-G solvation = -27864.269948 eV
Core-core repulsion = 23751.463205 eV
Total energy + Delta-G solvation = -4112.806743 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.139 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.31470 -39.76930 -38.31775 -37.55751 -37.24708 -36.85265 -35.81381 -33.85143
-31.81011 -30.35275 -28.90449 -28.68992 -27.52374 -26.07408 -25.54934 -22.77915
-22.20847 -21.75267 -19.97922 -19.30578 -18.96696 -18.16806 -18.09105 -17.49248
-17.38361 -17.19462 -16.48995 -16.39220 -15.86874 -15.78288 -15.39840 -15.30818
-15.20988 -15.05006 -14.62986 -14.16103 -13.98064 -13.80855 -13.63899 -13.50004
-13.30588 -13.21333 -13.19590 -13.02316 -12.77247 -12.64584 -12.55962 -12.49607
-12.35540 -12.14265 -12.07955 -11.89393 -11.69656 -11.53728 -10.79815 -10.69333
-10.25532 -10.00940 -8.99284 -7.89566 -5.27760 -0.96591 1.23553 1.44700
1.47637 1.54891 1.57005 1.89847 2.44706 2.73627 2.82950 3.08746
3.24173 3.30915 3.47251 3.79375 3.87036 3.89154 3.91418 4.05221
4.21513 4.33230 4.41151 4.54143 4.57795 4.60613 4.64235 4.79221
4.82870 4.87692 4.88460 5.01677 5.05250 5.09260 5.23564 5.33443
5.39691 5.58806 5.64379 6.11340 6.19408 6.30138 6.93154 7.03107
7.67521 8.29398 9.19878
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.018349 B = 0.002831 C = 0.002560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1525.629940 B = 9886.519732 C =10936.141751
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.399 6.399
3 C 0.078 3.922
4 H 0.105 0.895
5 C 0.173 3.827
6 N -0.622 5.622
7 C -0.248 4.248
8 H 0.083 0.917
9 C -0.061 4.061
10 N -0.948 5.948
11 Si 0.981 3.019
12 H -0.289 1.289
13 H -0.289 1.289
14 H -0.267 1.267
15 C 0.128 3.872
16 C 0.140 3.860
17 H 0.077 0.923
18 N -0.682 5.682
19 C 0.531 3.469
20 O -0.589 6.589
21 C -0.651 4.651
22 S 2.638 3.362
23 O -0.983 6.983
24 O -0.984 6.984
25 N -1.003 6.003
26 C 0.080 3.920
27 C 0.069 3.931
28 H 0.099 0.901
29 H 0.069 0.931
30 H 0.035 0.965
31 H 0.016 0.984
32 H 0.026 0.974
33 H 0.249 0.751
34 H 0.051 0.949
35 H 0.035 0.965
36 H 0.425 0.575
37 H 0.206 0.794
38 H 0.206 0.794
39 H 0.053 0.947
40 H 0.108 0.892
41 H 0.079 0.921
42 H 0.087 0.913
43 H 0.097 0.903
44 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.190 1.331 27.852 28.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.318 6.318
3 C 0.019 3.981
4 H 0.123 0.877
5 C 0.047 3.953
6 N -0.349 5.349
7 C -0.377 4.377
8 H 0.101 0.899
9 C -0.255 4.255
10 N -0.597 5.597
11 Si 0.809 3.191
12 H -0.216 1.216
13 H -0.216 1.216
14 H -0.192 1.192
15 C 0.001 3.999
16 C 0.033 3.967
17 H 0.095 0.905
18 N -0.334 5.334
19 C 0.317 3.683
20 O -0.470 6.470
21 C -0.780 4.780
22 S 2.729 3.271
23 O -0.973 6.973
24 O -0.974 6.974
25 N -0.844 5.844
26 C -0.065 4.065
27 C -0.075 4.075
28 H 0.117 0.883
29 H 0.087 0.913
30 H 0.054 0.946
31 H 0.034 0.966
32 H 0.044 0.956
33 H 0.058 0.942
34 H 0.069 0.931
35 H 0.053 0.947
36 H 0.264 0.736
37 H 0.223 0.777
38 H 0.224 0.776
39 H 0.071 0.929
40 H 0.127 0.873
41 H 0.097 0.903
42 H 0.105 0.895
43 H 0.116 0.884
44 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -5.713 0.321 27.057 27.655
hybrid contribution -0.518 0.792 -1.355 1.653
sum -6.230 1.113 25.702 26.470
Atomic orbital electron populations
1.23013 0.79134 1.03944 1.00957 1.87907 1.21955 1.27015 1.94921
1.23507 0.93387 0.85446 0.95792 0.87740 1.21315 0.87207 0.94760
0.92012 1.44508 1.21995 1.66478 1.01966 1.19452 1.02727 1.29620
0.85885 0.89925 1.25671 0.98433 1.01397 0.99962 1.70146 1.20486
1.48311 1.20731 0.85048 0.77310 0.78086 0.78680 1.21633 1.21553
1.19169 1.21974 0.97333 0.95810 0.84759 1.22012 0.96311 0.98880
0.79466 0.90470 1.45476 1.25391 1.57411 1.05092 1.19987 0.82407
0.77870 0.88049 1.90879 1.31878 1.43692 1.80520 1.30997 1.26154
1.19839 1.01039 1.04013 0.75770 0.73684 0.73600 1.93533 1.87227
1.30356 1.86176 1.93523 1.44014 1.75285 1.84552 1.57235 1.69977
1.30999 1.26202 1.21806 0.95708 0.92057 0.96889 1.21924 1.00431
0.84201 1.00988 0.88263 0.91277 0.94591 0.96579 0.95595 0.94153
0.93118 0.94668 0.73555 0.77663 0.77641 0.92856 0.87343 0.90268
0.89464 0.88447 0.91490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.63 10.85 113.37 1.23 1.86 16
2 O -0.40 -14.03 10.43 -148.98 -1.55 -15.59 16
3 C 0.08 2.79 3.09 31.79 0.10 2.89 16
4 H 0.10 2.90 7.69 -2.39 -0.02 2.88 16
5 C 0.17 8.54 5.15 86.73 0.45 8.99 16
6 N -0.62 -32.66 3.39 -691.98 -2.35 -35.00 16
7 C -0.25 -14.25 10.28 84.03 0.86 -13.39 16
8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16
9 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16
10 N -0.95 -57.19 10.31 21.65 0.22 -56.97 16
11 Si 0.98 46.44 29.55 68.60 2.03 48.47 16
12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16
14 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16
15 C 0.13 5.43 6.93 86.86 0.60 6.03 16
16 C 0.14 5.15 3.15 46.39 0.15 5.29 16
17 H 0.08 3.43 7.54 -2.39 -0.02 3.41 16
18 N -0.68 -17.23 5.20 -435.95 -2.27 -19.49 16
19 C 0.53 14.69 7.85 87.66 0.69 15.37 16
20 O -0.59 -23.53 15.51 -3.02 -0.05 -23.58 16
21 C -0.65 -9.07 6.66 71.24 0.47 -8.59 16
22 S 2.64 60.02 4.51 -56.49 -0.25 59.76 16
23 O -0.98 -30.50 17.09 -127.64 -2.18 -32.68 16
24 O -0.98 -30.80 16.57 -127.64 -2.12 -32.91 16
25 N -1.00 -12.62 3.52 -562.69 -1.98 -14.60 16
26 C 0.08 0.64 10.20 127.77 1.30 1.94 16
27 C 0.07 0.56 10.64 127.77 1.36 1.92 16
28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16
29 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16
30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16
31 H 0.02 0.93 7.29 -2.39 -0.02 0.91 16
32 H 0.03 1.38 7.51 -2.39 -0.02 1.36 16
33 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16
34 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16
35 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16
36 H 0.43 6.43 8.57 -92.71 -0.79 5.63 16
37 H 0.21 0.97 8.14 -2.39 -0.02 0.95 16
38 H 0.21 0.90 8.14 -2.39 -0.02 0.88 16
39 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16
40 H 0.11 0.12 8.07 -2.39 -0.02 0.10 16
41 H 0.08 0.54 7.79 -2.39 -0.02 0.52 16
42 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16
43 H 0.10 0.42 8.07 -2.39 -0.02 0.40 16
44 H 0.07 0.85 6.91 -2.39 -0.02 0.83 16
Total: -1.00 -93.22 376.51 -2.61 -95.83
By element:
Atomic # 1 Polarization: 7.31 SS G_CDS: 0.21 Total: 7.52 kcal
Atomic # 6 Polarization: 11.57 SS G_CDS: 7.68 Total: 19.24 kcal
Atomic # 7 Polarization: -119.69 SS G_CDS: -6.37 Total: -126.06 kcal
Atomic # 8 Polarization: -98.86 SS G_CDS: -5.90 Total: -104.76 kcal
Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal
Atomic # 16 Polarization: 60.02 SS G_CDS: -0.25 Total: 59.76 kcal
Total: -93.22 -2.61 -95.83 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001213796659.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.705 kcal
(2) G-P(sol) polarization free energy of solvation -93.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.927 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.605 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds