Wall clock time and date at job start Tue Mar 31 2020 18:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81392 * 109.47370 * 2 1 4 4 O 1.42108 * 110.54560 * 68.37112 * 3 2 1 5 5 O 1.42098 * 110.54270 * 291.62202 * 3 2 1 6 6 N 1.65595 * 104.45224 * 179.97438 * 3 2 1 7 7 C 1.46505 * 119.99846 * 64.99984 * 6 3 2 8 8 H 1.09002 * 109.47068 * 335.00142 * 7 6 3 9 9 C 1.53002 * 109.47411 * 95.00222 * 7 6 3 10 10 C 1.50703 * 109.47064 * 215.00173 * 7 6 3 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 7 6 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 7 6 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 7 14 14 H 1.09002 * 110.64274 * 36.68138 * 13 12 10 15 15 C 1.54324 * 110.71867 * 273.54063 * 13 12 10 16 16 N 1.47018 * 107.27515 * 219.44135 * 15 13 12 17 17 C 1.36936 * 125.65094 * 178.97655 * 16 15 13 18 18 H 1.07994 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00497 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46795 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47132 * 120.00208 * 21 19 17 24 24 H 1.48500 * 109.46775 * 239.99764 * 21 19 17 25 25 C 1.47427 * 108.69893 * 358.94270 * 16 15 13 26 26 C 1.54904 * 104.83424 * 24.12757 * 25 16 15 27 27 H 1.08999 * 111.00869 * 204.91138 * 26 25 16 28 28 O 1.42910 * 111.00570 * 81.06483 * 26 25 16 29 29 H 1.08996 * 109.47661 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47256 * 300.00441 * 1 2 3 31 31 H 1.09000 * 109.46849 * 59.99943 * 1 2 3 32 32 H 1.08999 * 109.47256 * 239.99559 * 2 1 3 33 33 H 1.09000 * 109.46849 * 120.00057 * 2 1 3 34 34 H 0.96998 * 120.00287 * 244.99654 * 6 3 2 35 35 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.46986 * 300.00092 * 9 7 6 37 37 H 1.09002 * 109.47075 * 59.99363 * 9 7 6 38 38 H 0.97005 * 119.99463 * 359.97438 * 12 10 7 39 39 H 1.08994 * 109.88217 * 338.86515 * 15 13 12 40 40 H 1.09004 * 109.88070 * 99.87141 * 15 13 12 41 41 H 0.97000 * 120.00211 * 180.02562 * 20 19 17 42 42 H 1.09005 * 110.36516 * 142.96384 * 25 16 15 43 43 H 1.09000 * 110.36713 * 265.17517 * 25 16 15 44 44 H 0.96695 * 113.99745 * 67.80556 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8387 2.3437 -1.2370 6 7 3.7843 1.5652 0.0007 7 6 4.4675 0.9668 -1.1488 8 1 3.7818 0.3008 -1.6727 9 6 4.9304 2.0726 -2.0995 10 6 5.6624 0.1827 -0.6707 11 8 5.9183 0.1294 0.5136 12 7 6.4471 -0.4585 -1.5592 13 6 7.6083 -1.2212 -1.0943 14 1 7.3896 -1.7155 -0.1477 15 6 8.8440 -0.3066 -0.9599 16 7 10.0066 -1.0708 -1.4352 17 6 11.2940 -0.6085 -1.4984 18 1 11.5223 0.3984 -1.1817 19 6 12.3055 -1.4342 -1.9694 20 7 12.0273 -2.6612 -2.3559 21 14 14.0619 -0.8037 -2.0549 22 1 14.1090 0.5978 -1.5664 23 1 14.9348 -1.6539 -1.2061 24 1 14.5379 -0.8539 -3.4606 25 6 9.5568 -2.4176 -1.8319 26 6 8.0534 -2.2513 -2.1659 27 1 7.5199 -3.1943 -2.0467 28 8 7.8762 -1.7282 -3.4840 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 4.2982 1.8766 0.7622 35 1 5.4383 1.6274 -2.9549 36 1 4.0662 2.6398 -2.4453 37 1 5.6160 2.7387 -1.5756 38 1 6.2426 -0.4156 -2.5064 39 1 8.7124 0.5864 -1.5708 40 1 8.9846 -0.0244 0.0835 41 1 12.7343 -3.2382 -2.6847 42 1 10.1053 -2.7572 -2.7106 43 1 9.6888 -3.1195 -1.0085 44 1 8.1409 -2.3366 -4.1874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219670060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:48 Heat of formation + Delta-G solvation = -157.410614 kcal Electronic energy + Delta-G solvation = -27920.050572 eV Core-core repulsion = 23806.381858 eV Total energy + Delta-G solvation = -4113.668714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24271 -39.53520 -38.21545 -37.07034 -36.47805 -36.33481 -35.50002 -34.03008 -33.61796 -31.15857 -30.06754 -28.66613 -26.54261 -25.10542 -24.94743 -22.46274 -21.85992 -21.14934 -20.40639 -19.42988 -19.02775 -18.36063 -18.02135 -17.35918 -17.15436 -16.88598 -16.67486 -16.20022 -16.04389 -15.80198 -15.22689 -15.00520 -14.71085 -14.61831 -14.35272 -14.20834 -14.01648 -13.60193 -13.41784 -13.39011 -13.24083 -13.21377 -13.12289 -12.89750 -12.80354 -12.77071 -12.68921 -12.37368 -12.22647 -12.08917 -11.89619 -11.82825 -11.69347 -11.01762 -10.87066 -10.71104 -10.49681 -10.10622 -8.89344 -7.81099 -5.23817 -0.76230 1.46117 1.46590 1.49954 1.56919 1.57831 2.12845 2.48455 2.79611 3.19578 3.20594 3.30190 3.48568 3.67636 3.73616 3.83525 3.88682 3.93540 3.97438 4.04620 4.27631 4.34361 4.40797 4.51928 4.72893 4.75693 4.82880 4.86223 4.88544 4.95600 5.01206 5.13649 5.29580 5.35630 5.45963 5.49724 5.73255 5.88895 6.26894 6.57081 6.93637 7.09524 7.21042 7.74110 8.35894 9.20807 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.002489 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.800321 B =11247.349339 C =11569.922353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.616 4.616 3 S 2.618 3.382 4 O -0.995 6.995 5 O -0.978 6.978 6 N -1.106 6.106 7 C 0.139 3.861 8 H 0.149 0.851 9 C -0.171 4.171 10 C 0.506 3.494 11 O -0.570 6.570 12 N -0.692 5.692 13 C 0.155 3.845 14 H 0.099 0.901 15 C 0.131 3.869 16 N -0.617 5.617 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.060 4.060 20 N -0.944 5.944 21 Si 0.978 3.022 22 H -0.274 1.274 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.124 3.876 26 C 0.093 3.907 27 H 0.098 0.902 28 O -0.562 6.562 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.422 0.578 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.421 0.579 39 H 0.023 0.977 40 H 0.008 0.992 41 H 0.249 0.751 42 H 0.090 0.910 43 H -0.001 1.001 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.429 0.782 -1.856 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.749 4.749 3 S 2.714 3.286 4 O -0.986 6.986 5 O -0.968 6.968 6 N -0.864 5.864 7 C 0.028 3.972 8 H 0.166 0.834 9 C -0.230 4.230 10 C 0.291 3.709 11 O -0.448 6.448 12 N -0.345 5.345 13 C 0.048 3.952 14 H 0.117 0.883 15 C 0.004 3.996 16 N -0.343 5.343 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.806 3.194 22 H -0.198 1.198 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.002 4.002 26 C 0.032 3.968 27 H 0.116 0.884 28 O -0.370 6.370 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.258 0.742 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.260 0.740 39 H 0.041 0.959 40 H 0.026 0.974 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.017 0.983 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -23.842 1.988 -0.905 23.942 hybrid contribution 2.069 -0.693 0.020 2.182 sum -21.773 1.295 -0.885 21.829 Atomic orbital electron populations 1.21686 0.89740 1.06542 1.03847 1.30373 1.07821 1.22708 1.14010 1.04761 0.72233 0.78601 0.73043 1.93564 1.83301 1.75215 1.46520 1.93573 1.83424 1.73847 1.45932 1.55466 1.25865 1.77237 1.27814 1.20777 0.93622 0.95722 0.87078 0.83396 1.22332 1.03412 0.98307 0.98909 1.21214 0.84669 0.78958 0.86080 1.90704 1.73373 1.62631 1.18131 1.45659 1.26405 1.50862 1.11532 1.21826 0.84431 0.91554 0.97390 0.88299 1.21652 0.87635 0.94709 0.95601 1.44557 1.03064 1.11568 1.75093 1.19391 0.83921 0.97560 1.35882 0.91069 1.25510 1.01693 0.96443 1.01614 1.69940 1.31633 1.07501 1.50311 0.85020 0.79736 0.77501 0.77098 1.19850 1.21830 1.21366 1.22528 0.91916 0.85905 0.99810 1.23243 0.95366 0.95239 0.82929 0.88439 1.86195 1.87874 1.47992 1.14935 0.87944 0.91134 0.90272 0.82333 0.83402 0.74179 0.89079 0.89304 0.92630 0.74000 0.95876 0.97429 0.94090 0.89221 0.98272 0.75320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.92 71.98 0.71 -0.57 16 2 C -0.62 -5.45 6.68 71.98 0.48 -4.97 16 3 S 2.62 44.48 5.38 -56.49 -0.30 44.18 16 4 O -1.00 -24.91 18.08 -127.65 -2.31 -27.22 16 5 O -0.98 -20.86 17.11 -127.65 -2.18 -23.05 16 6 N -1.11 -20.08 5.15 -172.50 -0.89 -20.97 16 7 C 0.14 2.33 3.09 44.25 0.14 2.47 16 8 H 0.15 1.18 7.15 -2.39 -0.02 1.16 16 9 C -0.17 -2.88 9.41 71.98 0.68 -2.21 16 10 C 0.51 12.36 7.22 87.66 0.63 12.99 16 11 O -0.57 -18.46 15.71 -3.02 -0.05 -18.51 16 12 N -0.69 -17.05 4.98 -436.92 -2.17 -19.23 16 13 C 0.15 5.06 3.12 46.18 0.14 5.20 16 14 H 0.10 3.32 7.70 -2.39 -0.02 3.30 16 15 C 0.13 5.62 6.99 86.73 0.61 6.23 16 16 N -0.62 -31.31 3.39 -692.01 -2.35 -33.66 16 17 C -0.24 -13.41 10.27 84.03 0.86 -12.54 16 18 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 19 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 20 N -0.94 -53.56 10.09 21.65 0.22 -53.34 16 21 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 C 0.12 5.57 5.62 86.85 0.49 6.06 16 26 C 0.09 2.91 4.28 31.98 0.14 3.05 16 27 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 28 O -0.56 -15.75 12.23 -148.98 -1.82 -17.58 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.16 0.57 7.44 -2.39 -0.02 0.55 16 33 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.42 8.70 8.17 -96.75 -0.79 7.91 16 35 H 0.09 1.27 7.56 -2.39 -0.02 1.25 16 36 H 0.09 1.47 7.43 -2.39 -0.02 1.45 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 8.46 6.99 -92.70 -0.65 7.81 16 39 H 0.02 1.02 8.03 -2.39 -0.02 1.00 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 42 H 0.09 4.52 5.87 -2.38 -0.01 4.50 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.40 8.60 9.12 -74.06 -0.68 7.93 16 Total: -1.00 -80.19 371.83 -5.55 -85.74 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -1.06 Total: 23.58 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.35 Total: 12.85 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -5.19 Total: -127.20 kcal Atomic # 8 Polarization: -79.99 SS G_CDS: -6.36 Total: -86.35 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 44.48 SS G_CDS: -0.30 Total: 44.18 kcal Total: -80.19 -5.55 -85.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219670060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.671 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds