Wall clock time and date at job start Tue Mar 31 2020 18:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81396 * 109.47360 * 2 1 4 4 O 1.42094 * 110.54259 * 291.62586 * 3 2 1 5 5 O 1.42106 * 110.54167 * 68.37612 * 3 2 1 6 6 N 1.65606 * 104.45103 * 179.97438 * 3 2 1 7 7 C 1.46495 * 119.99960 * 270.00230 * 6 3 2 8 8 C 1.46498 * 119.99829 * 89.99885 * 6 3 2 9 9 C 1.50708 * 109.47065 * 95.00025 * 8 6 3 10 10 O 1.21280 * 119.99681 * 0.02562 * 9 8 6 11 11 N 1.34766 * 119.99966 * 179.97438 * 9 8 6 12 12 C 1.46503 * 119.99827 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.64130 * 36.68784 * 12 11 9 14 14 C 1.54329 * 110.72046 * 273.54516 * 12 11 9 15 15 N 1.47021 * 107.27325 * 219.44566 * 14 12 11 16 16 C 1.36933 * 125.65054 * 178.98093 * 15 14 12 17 17 H 1.08003 * 119.99641 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00391 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99861 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00206 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.46963 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47197 * 120.00007 * 20 18 16 23 23 H 1.48504 * 109.47063 * 239.99485 * 20 18 16 24 24 C 1.47427 * 108.70029 * 358.94046 * 15 14 12 25 25 C 1.54909 * 104.83732 * 24.13136 * 24 15 14 26 26 H 1.08989 * 111.00724 * 204.91862 * 25 24 15 27 27 O 1.42903 * 111.00304 * 81.05998 * 25 24 15 28 28 H 1.09002 * 109.47153 * 59.99820 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00011 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00180 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99809 * 2 1 3 33 33 H 1.08995 * 109.47296 * 90.00132 * 7 6 3 34 34 H 1.09002 * 109.46805 * 210.00016 * 7 6 3 35 35 H 1.09000 * 109.47118 * 329.99873 * 7 6 3 36 36 H 1.08997 * 109.47467 * 214.99968 * 8 6 3 37 37 H 1.09002 * 109.47514 * 335.00298 * 8 6 3 38 38 H 0.96999 * 120.00462 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.88252 * 338.86575 * 14 12 11 40 40 H 1.09000 * 109.88057 * 99.87059 * 14 12 11 41 41 H 0.96993 * 120.00167 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36143 * 142.96971 * 24 15 14 43 43 H 1.08999 * 110.36730 * 265.28769 * 24 15 14 44 44 H 0.96697 * 113.99967 * 67.81038 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7844 1.5652 0.0007 7 6 4.5135 1.5012 1.2697 8 6 4.5146 1.5009 -1.2677 9 6 4.9957 2.8795 -1.6409 10 8 4.7529 3.8227 -0.9181 11 7 5.6965 3.0640 -2.7771 12 6 6.1647 4.4040 -3.1395 13 1 6.4661 4.9591 -2.2512 14 6 5.0755 5.1707 -3.9190 15 7 5.7506 5.9236 -4.9862 16 6 5.1338 6.7185 -5.9150 17 1 4.0598 6.8316 -5.9011 18 6 5.8888 7.3781 -6.8751 19 7 7.1976 7.2399 -6.8923 20 14 5.0473 8.4619 -8.1426 21 1 3.5809 8.4494 -7.9092 22 1 5.5564 9.8517 -8.0218 23 1 5.3357 7.9459 -9.5049 24 6 7.2017 5.6818 -4.8899 25 6 7.3296 4.3209 -4.1611 26 1 8.2901 4.2388 -3.6525 27 8 7.1383 3.2338 -5.0688 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 4.6044 0.4617 1.5845 34 1 5.5073 1.9297 1.1397 35 1 3.9714 2.0648 2.0291 36 1 5.3701 0.8340 -1.1611 37 1 3.8544 1.1229 -2.0483 38 1 5.8910 2.3096 -3.3549 39 1 4.3659 4.4667 -4.3538 40 1 4.5547 5.8564 -3.2507 41 1 7.7252 7.7011 -7.5629 42 1 7.6431 5.6223 -5.8848 43 1 7.6799 6.4700 -4.3084 44 1 7.8415 3.1419 -5.7262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220656518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:32 Heat of formation + Delta-G solvation = -109.670970 kcal Electronic energy + Delta-G solvation = -28112.036875 eV Core-core repulsion = 24000.438308 eV Total energy + Delta-G solvation = -4111.598567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.73880 -37.96296 -37.28649 -36.13372 -35.83836 -34.69627 -33.89917 -33.52117 -31.68994 -29.37630 -28.21924 -26.87343 -25.49519 -24.41595 -24.03448 -20.96863 -20.44668 -19.70278 -19.00835 -18.02782 -17.57022 -17.00988 -16.87560 -16.45503 -16.33971 -15.51619 -14.98127 -14.80616 -14.73911 -14.32115 -14.29723 -14.05241 -13.64609 -13.37682 -13.02461 -12.94835 -12.87969 -12.82967 -12.58651 -12.41840 -12.19691 -11.96660 -11.84509 -11.75293 -11.60106 -11.28697 -11.02197 -10.88753 -10.82997 -10.57874 -10.30573 -10.14514 -9.96475 -9.79907 -9.28348 -9.04316 -8.67182 -8.62763 -6.80036 -5.65604 -3.04739 -0.03754 2.34200 2.81930 3.37999 3.42631 3.48371 3.51537 3.69994 3.85435 4.15842 4.38984 4.44774 4.51319 4.60819 4.77310 4.94640 4.96487 5.05295 5.17543 5.22724 5.27034 5.38152 5.40845 5.49603 5.53000 5.62825 5.68401 5.77434 5.96135 6.08033 6.14665 6.31919 6.60766 6.80794 7.02347 7.29246 7.61153 7.75338 7.84845 8.13501 8.34881 8.50047 9.22849 9.83622 10.47070 11.39841 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.002845 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.319696 B = 9841.067978 C =10618.722514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.635 4.635 3 S 2.606 3.394 4 O -0.939 6.939 5 O -0.948 6.948 6 N -0.985 5.985 7 C 0.088 3.912 8 C 0.106 3.894 9 C 0.491 3.509 10 O -0.531 6.531 11 N -0.707 5.707 12 C 0.144 3.856 13 H 0.099 0.901 14 C 0.130 3.870 15 N -0.597 5.597 16 C -0.212 4.212 17 H 0.079 0.921 18 C -0.015 4.015 19 N -0.929 5.929 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.127 3.873 25 C 0.068 3.932 26 H 0.058 0.942 27 O -0.561 6.561 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.407 0.593 39 H 0.031 0.969 40 H 0.028 0.972 41 H 0.251 0.749 42 H 0.115 0.885 43 H 0.022 0.978 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -21.027 14.147 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.764 4.764 3 S 2.698 3.302 4 O -0.929 6.929 5 O -0.938 6.938 6 N -0.821 5.821 7 C -0.058 4.058 8 C -0.023 4.023 9 C 0.274 3.726 10 O -0.406 6.406 11 N -0.360 5.360 12 C 0.038 3.962 13 H 0.117 0.883 14 C 0.003 3.997 15 N -0.323 5.323 16 C -0.341 4.341 17 H 0.097 0.903 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.001 3.999 25 C 0.008 3.992 26 H 0.076 0.924 27 O -0.367 6.367 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.242 0.758 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.133 0.867 43 H 0.039 0.961 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.620 -19.492 14.883 24.956 hybrid contribution 0.459 -0.357 -1.278 1.404 sum -4.161 -19.849 13.605 24.421 Atomic orbital electron populations 1.21511 0.90452 1.05011 1.03695 1.30595 1.07324 1.27023 1.11446 1.05392 0.72944 0.77197 0.74707 1.93654 1.82732 1.71639 1.44872 1.93580 1.82869 1.72016 1.45368 1.57088 1.24579 1.89544 1.10904 1.21578 0.98889 1.01116 0.84181 1.21117 0.99355 0.95759 0.86096 1.21044 0.78496 0.91500 0.81517 1.90713 1.55728 1.42729 1.51473 1.45803 1.55623 1.11273 1.23286 1.22129 0.94410 0.83102 0.96525 0.88349 1.21607 0.93862 0.93908 0.90290 1.44305 1.01957 1.54013 1.32045 1.19179 0.91638 1.18549 1.04688 0.90320 1.24750 0.95670 1.00889 0.99612 1.69728 1.03734 1.47283 1.37095 0.85951 0.78438 0.79853 0.81033 1.20494 1.21809 1.21806 1.22598 0.86386 0.89255 1.01641 1.23568 0.95255 0.90162 0.90254 0.92416 1.86235 1.52324 1.50758 1.47359 0.90756 0.90932 0.90009 0.85146 0.85059 0.92815 0.90441 0.89612 0.87236 0.87194 0.75758 0.95054 0.95359 0.93856 0.86706 0.96057 0.77365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.92 37.16 0.37 -0.57 16 2 C -0.64 -3.90 6.90 37.16 0.26 -3.64 16 3 S 2.61 29.72 5.37 -107.50 -0.58 29.14 16 4 O -0.94 -14.72 16.99 -57.54 -0.98 -15.70 16 5 O -0.95 -13.66 16.57 -57.54 -0.95 -14.62 16 6 N -0.98 -10.06 2.61 -123.06 -0.32 -10.38 16 7 C 0.09 0.72 10.65 59.84 0.64 1.36 16 8 C 0.11 1.04 5.72 -5.19 -0.03 1.01 16 9 C 0.49 7.57 7.89 -10.99 -0.09 7.48 16 10 O -0.53 -10.51 16.14 5.56 0.09 -10.42 16 11 N -0.71 -10.88 5.09 -52.02 -0.26 -11.15 16 12 C 0.14 2.73 3.12 -66.09 -0.21 2.52 16 13 H 0.10 1.91 7.69 -51.93 -0.40 1.51 16 14 C 0.13 3.05 6.99 -3.06 -0.02 3.03 16 15 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 16 C -0.21 -6.13 10.27 -15.06 -0.15 -6.28 16 17 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 18 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 19 N -0.93 -26.85 10.09 55.49 0.56 -26.29 16 20 Si 0.92 22.56 29.55 -169.99 -5.02 17.54 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.13 3.00 5.62 -2.53 -0.01 2.99 16 25 C 0.07 1.23 4.28 -24.58 -0.11 1.13 16 26 H 0.06 0.90 8.14 -51.94 -0.42 0.47 16 27 O -0.56 -9.28 12.23 -35.23 -0.43 -9.71 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.13 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.09 0.81 6.91 -51.93 -0.36 0.45 16 36 H 0.11 0.63 8.11 -51.93 -0.42 0.21 16 37 H 0.11 0.87 7.61 -51.93 -0.40 0.48 16 38 H 0.41 5.30 7.57 -40.82 -0.31 5.00 16 39 H 0.03 0.76 8.03 -51.93 -0.42 0.35 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.12 2.98 5.87 -51.93 -0.30 2.68 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.38 5.01 9.12 45.56 0.42 5.42 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -39.69 374.60 -8.24 -47.93 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.96 Total: 5.89 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.55 Total: 8.52 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.60 Total: -64.22 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -2.27 Total: -50.45 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 29.72 SS G_CDS: -0.58 Total: 29.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.69 -8.24 -47.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220656518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.740 kcal (2) G-P(sol) polarization free energy of solvation -39.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds