Wall clock time and date at job start Tue Mar 31 2020 18:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81396 * 109.47360 * 2 1 4 4 O 1.42094 * 110.54259 * 291.62586 * 3 2 1 5 5 O 1.42106 * 110.54167 * 68.37612 * 3 2 1 6 6 N 1.65606 * 104.45103 * 179.97438 * 3 2 1 7 7 C 1.46495 * 119.99960 * 270.00230 * 6 3 2 8 8 C 1.46498 * 119.99829 * 89.99885 * 6 3 2 9 9 C 1.50708 * 109.47065 * 95.00025 * 8 6 3 10 10 O 1.21280 * 119.99681 * 0.02562 * 9 8 6 11 11 N 1.34766 * 119.99966 * 179.97438 * 9 8 6 12 12 C 1.46503 * 119.99827 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.64130 * 36.68784 * 12 11 9 14 14 C 1.54329 * 110.72046 * 273.54516 * 12 11 9 15 15 N 1.47021 * 107.27325 * 219.44566 * 14 12 11 16 16 C 1.36933 * 125.65054 * 178.98093 * 15 14 12 17 17 H 1.08003 * 119.99641 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00391 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99861 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00206 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.46963 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47197 * 120.00007 * 20 18 16 23 23 H 1.48504 * 109.47063 * 239.99485 * 20 18 16 24 24 C 1.47427 * 108.70029 * 358.94046 * 15 14 12 25 25 C 1.54909 * 104.83732 * 24.13136 * 24 15 14 26 26 H 1.08989 * 111.00724 * 204.91862 * 25 24 15 27 27 O 1.42903 * 111.00304 * 81.05998 * 25 24 15 28 28 H 1.09002 * 109.47153 * 59.99820 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00011 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00180 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99809 * 2 1 3 33 33 H 1.08995 * 109.47296 * 90.00132 * 7 6 3 34 34 H 1.09002 * 109.46805 * 210.00016 * 7 6 3 35 35 H 1.09000 * 109.47118 * 329.99873 * 7 6 3 36 36 H 1.08997 * 109.47467 * 214.99968 * 8 6 3 37 37 H 1.09002 * 109.47514 * 335.00298 * 8 6 3 38 38 H 0.96999 * 120.00462 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.88252 * 338.86575 * 14 12 11 40 40 H 1.09000 * 109.88057 * 99.87059 * 14 12 11 41 41 H 0.96993 * 120.00167 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36143 * 142.96971 * 24 15 14 43 43 H 1.08999 * 110.36730 * 265.28769 * 24 15 14 44 44 H 0.96697 * 113.99967 * 67.81038 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7844 1.5652 0.0007 7 6 4.5135 1.5012 1.2697 8 6 4.5146 1.5009 -1.2677 9 6 4.9957 2.8795 -1.6409 10 8 4.7529 3.8227 -0.9181 11 7 5.6965 3.0640 -2.7771 12 6 6.1647 4.4040 -3.1395 13 1 6.4661 4.9591 -2.2512 14 6 5.0755 5.1707 -3.9190 15 7 5.7506 5.9236 -4.9862 16 6 5.1338 6.7185 -5.9150 17 1 4.0598 6.8316 -5.9011 18 6 5.8888 7.3781 -6.8751 19 7 7.1976 7.2399 -6.8923 20 14 5.0473 8.4619 -8.1426 21 1 3.5809 8.4494 -7.9092 22 1 5.5564 9.8517 -8.0218 23 1 5.3357 7.9459 -9.5049 24 6 7.2017 5.6818 -4.8899 25 6 7.3296 4.3209 -4.1611 26 1 8.2901 4.2388 -3.6525 27 8 7.1383 3.2338 -5.0688 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 4.6044 0.4617 1.5845 34 1 5.5073 1.9297 1.1397 35 1 3.9714 2.0648 2.0291 36 1 5.3701 0.8340 -1.1611 37 1 3.8544 1.1229 -2.0483 38 1 5.8910 2.3096 -3.3549 39 1 4.3659 4.4667 -4.3538 40 1 4.5547 5.8564 -3.2507 41 1 7.7252 7.7011 -7.5629 42 1 7.6431 5.6223 -5.8848 43 1 7.6799 6.4700 -4.3084 44 1 7.8415 3.1419 -5.7262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220656518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:30 Heat of formation + Delta-G solvation = -145.722986 kcal Electronic energy + Delta-G solvation = -28113.600208 eV Core-core repulsion = 24000.438308 eV Total energy + Delta-G solvation = -4113.161900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.05586 -39.47851 -38.25066 -37.08104 -36.71572 -36.36496 -35.39806 -34.03078 -33.62102 -30.74909 -29.66265 -28.45692 -26.64693 -25.91176 -24.71533 -22.55978 -21.97398 -21.26475 -19.89016 -19.27274 -18.81587 -18.35861 -18.18254 -17.48323 -17.25591 -16.90371 -16.63031 -16.10994 -15.87835 -15.68801 -15.39483 -15.06726 -14.76158 -14.64664 -14.33075 -14.19846 -14.01906 -13.83091 -13.56162 -13.41312 -13.34635 -13.23772 -13.20245 -12.93321 -12.77495 -12.61031 -12.47603 -12.40369 -12.24858 -12.09861 -11.92044 -11.85311 -11.56027 -11.22109 -10.89929 -10.72934 -10.09286 -9.93787 -8.92374 -7.82941 -5.26372 -0.81125 1.44492 1.45437 1.55864 1.57088 1.64946 2.19837 2.47719 2.95778 3.10953 3.21104 3.27639 3.56198 3.62058 3.78705 3.85665 3.91041 3.91937 4.00390 4.28120 4.30604 4.39569 4.43056 4.49703 4.69810 4.74116 4.75838 4.83402 4.84472 4.92444 4.99499 5.06373 5.11663 5.33036 5.44100 5.45047 5.52398 5.70084 6.24298 6.65504 6.94060 7.07585 7.33224 7.70816 8.33839 9.19148 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.002845 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.319696 B = 9841.067978 C =10618.722514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.592 4.592 3 S 2.585 3.415 4 O -0.999 6.999 5 O -0.996 6.996 6 N -0.988 5.988 7 C 0.082 3.918 8 C 0.110 3.890 9 C 0.480 3.520 10 O -0.584 6.584 11 N -0.697 5.697 12 C 0.154 3.846 13 H 0.091 0.909 14 C 0.131 3.869 15 N -0.616 5.616 16 C -0.244 4.244 17 H 0.068 0.932 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.982 3.018 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.125 3.875 25 C 0.096 3.904 26 H 0.099 0.901 27 O -0.560 6.560 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.422 0.578 39 H 0.019 0.981 40 H -0.002 1.002 41 H 0.251 0.749 42 H 0.093 0.907 43 H -0.001 1.001 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 -24.960 14.188 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.726 4.726 3 S 2.684 3.316 4 O -0.989 6.989 5 O -0.987 6.987 6 N -0.824 5.824 7 C -0.063 4.063 8 C -0.020 4.020 9 C 0.266 3.734 10 O -0.463 6.463 11 N -0.350 5.350 12 C 0.047 3.953 13 H 0.109 0.891 14 C 0.004 3.996 15 N -0.342 5.342 16 C -0.373 4.373 17 H 0.086 0.914 18 C -0.251 4.251 19 N -0.593 5.593 20 Si 0.810 3.190 21 H -0.200 1.200 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.000 4.000 25 C 0.035 3.965 26 H 0.117 0.883 27 O -0.369 6.369 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.184 0.816 32 H 0.183 0.817 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.182 0.818 37 H 0.151 0.849 38 H 0.260 0.740 39 H 0.037 0.963 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.016 0.984 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.002 -23.421 14.919 28.056 hybrid contribution 0.221 0.832 -1.275 1.539 sum -3.781 -22.589 13.644 26.659 Atomic orbital electron populations 1.21733 0.90537 1.06753 1.03347 1.30248 1.06905 1.20525 1.14912 1.05687 0.73409 0.79761 0.72766 1.93578 1.83646 1.75061 1.46610 1.93513 1.83564 1.75107 1.46507 1.56962 1.24138 1.89691 1.11607 1.21758 0.97783 1.03745 0.82987 1.21421 1.01633 0.92401 0.86502 1.22308 0.77077 0.93537 0.80435 1.90697 1.57456 1.45115 1.53055 1.45681 1.55576 1.09975 1.23783 1.21744 0.93081 0.84604 0.95846 0.89064 1.21637 0.95101 0.93314 0.89595 1.44570 1.03410 1.54019 1.32209 1.19410 0.91652 1.20140 1.06088 0.91393 1.25547 0.96470 1.01951 1.01169 1.69942 1.04563 1.47416 1.37381 0.84969 0.77627 0.77857 0.78580 1.20048 1.21590 1.20944 1.22545 0.84515 0.92100 1.00888 1.23213 0.96444 0.87329 0.89504 0.88334 1.86199 1.53630 1.49258 1.47774 0.91563 0.91291 0.86949 0.81622 0.81722 0.87990 0.90991 0.91869 0.81798 0.84924 0.73995 0.96270 0.98370 0.93946 0.88893 0.98360 0.75295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.92 71.98 0.71 -0.89 16 2 C -0.59 -4.84 6.90 71.98 0.50 -4.35 16 3 S 2.59 57.57 5.37 -56.49 -0.30 57.27 16 4 O -1.00 -32.37 16.99 -127.65 -2.17 -34.54 16 5 O -1.00 -29.90 16.57 -127.65 -2.12 -32.01 16 6 N -0.99 -18.28 2.61 -543.23 -1.42 -19.69 16 7 C 0.08 1.19 10.65 127.77 1.36 2.56 16 8 C 0.11 1.82 5.72 85.64 0.49 2.31 16 9 C 0.48 14.45 7.89 87.66 0.69 15.14 16 10 O -0.58 -23.93 16.14 -3.03 -0.05 -23.98 16 11 N -0.70 -20.58 5.09 -436.89 -2.22 -22.80 16 12 C 0.15 5.87 3.12 46.18 0.14 6.02 16 13 H 0.09 3.63 7.69 -2.39 -0.02 3.61 16 14 C 0.13 6.41 6.99 86.73 0.61 7.02 16 15 N -0.62 -33.91 3.39 -691.98 -2.35 -36.26 16 16 C -0.24 -14.61 10.27 84.03 0.86 -13.75 16 17 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 19 N -0.94 -55.41 10.09 21.65 0.22 -55.20 16 20 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 C 0.12 6.03 5.62 86.85 0.49 6.52 16 25 C 0.10 3.34 4.28 31.99 0.14 3.48 16 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 27 O -0.56 -17.24 12.23 -148.98 -1.82 -19.06 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 35 H 0.06 1.21 6.91 -2.39 -0.02 1.19 16 36 H 0.16 0.97 8.11 -2.39 -0.02 0.95 16 37 H 0.13 1.65 7.61 -2.39 -0.02 1.63 16 38 H 0.42 9.85 7.57 -92.71 -0.70 9.15 16 39 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.09 4.91 5.87 -2.39 -0.01 4.90 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.40 9.40 9.12 -74.06 -0.68 8.72 16 Total: -1.00 -94.36 374.60 -4.09 -98.45 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.35 Total: 17.65 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 6.46 Total: 21.13 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -5.77 Total: -133.95 kcal Atomic # 8 Polarization: -103.44 SS G_CDS: -6.15 Total: -109.59 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 57.57 SS G_CDS: -0.30 Total: 57.27 kcal Total: -94.36 -4.09 -98.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220656518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.271 kcal (2) G-P(sol) polarization free energy of solvation -94.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds