Wall clock time and date at job start Tue Mar 31 2020 18:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21293 * 119.99941 * 2 1 4 4 N 1.34777 * 119.99887 * 180.02562 * 2 1 3 5 5 C 1.40121 * 119.99676 * 183.99595 * 4 2 1 6 6 C 1.38721 * 120.09064 * 20.07177 * 5 4 2 7 7 C 1.38197 * 119.98354 * 180.27195 * 6 5 4 8 8 C 1.38284 * 120.16405 * 359.74271 * 7 6 5 9 9 N 1.48016 * 119.90980 * 180.02562 * 8 7 6 10 10 O 1.21800 * 119.99821 * 180.02562 * 9 8 7 11 11 O 1.21806 * 120.00084 * 0.02562 * 9 8 7 12 12 C 1.38241 * 120.17514 * 0.02562 * 8 7 6 13 13 C 1.38545 * 120.01807 * 359.97438 * 12 8 7 14 14 O 1.35978 * 120.08223 * 179.97438 * 13 12 8 15 15 C 1.42904 * 117.00036 * 0.66268 * 14 13 12 16 16 H 1.08996 * 110.63927 * 321.07979 * 15 14 13 17 17 C 1.55151 * 110.71934 * 197.74547 * 15 14 13 18 18 C 1.55131 * 101.48531 * 205.96817 * 17 15 14 19 19 N 1.47425 * 104.72166 * 37.29871 * 18 17 15 20 20 C 1.36934 * 125.65043 * 155.82031 * 19 18 17 21 21 H 1.08006 * 120.00001 * 208.47907 * 20 19 18 22 22 C 1.38809 * 119.99967 * 28.47531 * 20 19 18 23 23 N 1.31619 * 119.99708 * 197.52428 * 22 20 19 24 24 Si 1.86798 * 120.00284 * 17.52581 * 22 20 19 25 25 H 1.48496 * 109.47001 * 274.89497 * 24 22 20 26 26 H 1.48501 * 109.46822 * 34.88818 * 24 22 20 27 27 H 1.48500 * 109.47330 * 154.88971 * 24 22 20 28 28 C 1.47025 * 108.70232 * 335.55002 * 19 18 17 29 29 H 1.08998 * 109.46837 * 239.99892 * 1 2 3 30 30 H 1.08997 * 109.47015 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47134 * 119.99747 * 1 2 3 32 32 H 0.96995 * 120.00035 * 3.99252 * 4 2 1 33 33 H 1.07998 * 120.01040 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.92065 * 179.76329 * 7 6 5 35 35 H 1.08004 * 119.98977 * 179.97438 * 12 8 7 36 36 H 1.08996 * 111.00946 * 324.20979 * 17 15 14 37 37 H 1.09008 * 111.00592 * 88.02435 * 17 15 14 38 38 H 1.08999 * 110.49915 * 278.45322 * 18 17 15 39 39 H 1.09003 * 110.34177 * 156.05695 * 18 17 15 40 40 H 0.97004 * 119.99741 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.88228 * 120.70236 * 28 19 18 42 42 H 1.08998 * 109.88532 * 241.72079 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5796 -1.1687 0.0840 6 6 4.2477 -0.0573 0.5767 7 6 5.6275 -0.0590 0.6539 8 6 6.3449 -1.1686 0.2460 9 7 7.8226 -1.1645 0.3316 10 8 8.4561 -2.1408 -0.0277 11 8 8.4051 -0.1849 0.7614 12 6 5.6857 -2.2815 -0.2416 13 6 4.3026 -2.2878 -0.3222 14 8 3.6528 -3.3817 -0.8020 15 6 4.4584 -4.4957 -1.1920 16 1 5.3686 -4.1571 -1.6870 17 6 3.6572 -5.4590 -2.1071 18 6 4.3818 -6.8058 -1.8475 19 7 4.7192 -6.7793 -0.4126 20 6 4.9314 -7.8772 0.3778 21 1 4.7211 -7.8295 1.4361 22 6 5.4166 -9.0515 -0.1812 23 7 5.3003 -10.1883 0.4719 24 14 6.2346 -9.0184 -1.8602 25 1 5.1971 -9.1137 -2.9183 26 1 6.9880 -7.7485 -2.0187 27 1 7.1691 -10.1664 -1.9783 28 6 4.7964 -5.3787 0.0277 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3634 -0.5138 -0.8901 32 1 1.6977 -2.0062 -0.0594 33 1 3.6900 0.8109 0.8954 34 1 6.1469 0.8083 1.0340 35 1 6.2490 -3.1464 -0.5598 36 1 2.6120 -5.5087 -1.8021 37 1 3.7431 -5.1658 -3.1535 38 1 5.2882 -6.8738 -2.4491 39 1 3.7172 -7.6419 -2.0655 40 1 5.6390 -11.0090 0.0811 41 1 4.0752 -5.2006 0.8254 42 1 5.8030 -5.1563 0.3817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230246116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:33 Heat of formation + Delta-G solvation = -7.262569 kcal Electronic energy + Delta-G solvation = -29028.084608 eV Core-core repulsion = 24785.482851 eV Total energy + Delta-G solvation = -4242.601757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.23659 -41.33703 -40.01019 -38.31884 -36.68167 -36.51789 -35.43181 -32.56695 -31.86796 -30.79882 -29.91758 -29.50611 -28.38073 -26.20841 -24.74402 -23.58728 -22.60668 -21.41837 -20.96328 -20.55399 -19.68815 -18.74988 -18.43455 -17.54207 -17.49082 -17.40128 -16.94551 -16.26895 -15.76536 -15.63955 -15.11017 -14.97992 -14.58595 -14.33467 -13.96776 -13.73117 -13.42995 -13.13687 -13.03869 -12.68234 -12.60053 -12.53007 -12.37382 -12.06612 -11.65681 -11.55632 -11.35813 -11.26238 -11.16344 -11.12162 -10.83124 -10.70034 -10.36833 -10.31088 -10.17772 -9.64465 -9.29043 -8.78432 -8.44731 -7.11377 -6.07769 -3.49382 -0.31970 0.74218 1.15955 1.35714 2.00090 2.37954 2.72988 3.07012 3.24506 3.39897 3.41646 4.03144 4.23656 4.31316 4.39895 4.42308 4.60589 4.64706 4.74118 4.80166 4.82954 5.01377 5.04040 5.06315 5.18279 5.30326 5.31724 5.48443 5.50807 5.60926 5.69547 5.77424 5.94355 6.03100 6.19384 6.29393 6.37462 6.39053 6.49550 6.76993 6.99995 7.46496 7.63253 7.64044 8.19568 8.69004 9.53418 10.01097 11.08002 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.003719 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.289002 B = 7528.072336 C = 9490.488857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.514 3.486 3 O -0.523 6.523 4 N -0.658 5.658 5 C 0.172 3.828 6 C -0.111 4.111 7 C -0.069 4.069 8 C -0.027 4.027 9 N 0.031 4.969 10 O -0.158 6.158 11 O -0.164 6.164 12 C -0.128 4.128 13 C 0.113 3.887 14 O -0.297 6.297 15 C 0.064 3.936 16 H 0.085 0.915 17 C -0.118 4.118 18 C 0.112 3.888 19 N -0.602 5.602 20 C -0.250 4.250 21 H 0.089 0.911 22 C 0.031 3.969 23 N -0.905 5.905 24 Si 0.886 3.114 25 H -0.283 1.283 26 H -0.273 1.273 27 H -0.298 1.298 28 C 0.113 3.887 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.425 0.575 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.266 0.734 41 H 0.044 0.956 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 20.894 -3.046 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.303 3.697 3 O -0.399 6.399 4 N -0.302 5.302 5 C 0.074 3.926 6 C -0.132 4.132 7 C -0.089 4.089 8 C -0.111 4.111 9 N 0.550 4.450 10 O -0.374 6.374 11 O -0.379 6.379 12 C -0.148 4.148 13 C 0.064 3.936 14 O -0.210 6.210 15 C 0.008 3.992 16 H 0.102 0.898 17 C -0.157 4.157 18 C -0.013 4.013 19 N -0.330 5.330 20 C -0.377 4.377 21 H 0.107 0.893 22 C -0.169 4.169 23 N -0.547 5.547 24 Si 0.716 3.284 25 H -0.210 1.210 26 H -0.198 1.198 27 H -0.226 1.226 28 C -0.013 4.013 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.262 0.738 33 H 0.198 0.802 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.276 21.350 -3.035 23.888 hybrid contribution 1.024 -0.781 -0.965 1.610 sum -9.252 20.568 -4.000 22.905 Atomic orbital electron populations 1.21951 0.89759 1.06363 1.05187 1.21171 0.91296 0.82589 0.74616 1.90642 1.70130 1.31463 1.47642 1.43632 1.04315 1.11118 1.71146 1.17494 0.83486 0.93266 0.98316 1.21563 0.92862 0.99307 0.99463 1.20890 0.93729 0.96982 0.97293 1.20799 0.79457 0.98681 1.12166 1.43567 1.03512 1.00016 0.97927 1.94587 1.66861 1.25331 1.50637 1.94512 1.71030 1.25148 1.47187 1.20956 0.93364 0.99356 1.01164 1.18302 0.89357 0.88402 0.97585 1.86103 1.35856 1.21945 1.77062 1.23827 0.94234 0.83650 0.97439 0.89753 1.22896 1.00458 0.94497 0.97822 1.22082 0.96787 0.95133 0.87263 1.44573 1.82081 1.00544 1.05823 1.18578 1.38859 0.87267 0.93044 0.89300 1.25259 0.98182 0.95444 0.97990 1.69781 1.47643 0.98065 1.39213 0.86877 0.80097 0.76773 0.84684 1.21006 1.19830 1.22601 1.21883 0.99303 0.86008 0.94100 0.88508 0.88177 0.88617 0.73750 0.80178 0.82566 0.81686 0.89616 0.90585 0.95223 0.91407 0.92400 0.93769 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.32 36.01 0.37 -0.24 16 2 C 0.51 3.96 7.80 -10.98 -0.09 3.88 16 3 O -0.52 -5.76 13.96 5.55 0.08 -5.69 16 4 N -0.66 -5.29 5.33 -9.75 -0.05 -5.35 16 5 C 0.17 1.83 6.52 -83.50 -0.54 1.29 16 6 C -0.11 -1.17 8.79 -39.42 -0.35 -1.52 16 7 C -0.07 -0.76 9.55 -39.58 -0.38 -1.14 16 8 C -0.03 -0.36 6.85 -79.93 -0.55 -0.90 16 9 N 0.03 0.48 4.45 33.97 0.15 0.63 16 10 O -0.16 -2.65 18.44 -29.46 -0.54 -3.20 16 11 O -0.16 -2.49 18.44 -29.46 -0.54 -3.03 16 12 C -0.13 -1.68 8.36 -39.47 -0.33 -2.01 16 13 C 0.11 1.36 6.63 -39.08 -0.26 1.10 16 14 O -0.30 -3.72 9.24 -19.67 -0.18 -3.91 16 15 C 0.06 0.94 2.78 -24.90 -0.07 0.87 16 16 H 0.08 1.17 6.33 -51.93 -0.33 0.84 16 17 C -0.12 -1.73 6.82 -24.47 -0.17 -1.90 16 18 C 0.11 2.22 4.80 -2.41 -0.01 2.21 16 19 N -0.60 -13.79 3.08 -169.93 -0.52 -14.31 16 20 C -0.25 -6.88 10.55 -15.06 -0.16 -7.04 16 21 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 22 C 0.03 0.89 5.46 -17.43 -0.10 0.79 16 23 N -0.90 -27.17 13.97 55.49 0.78 -26.39 16 24 Si 0.89 21.79 24.38 -169.99 -4.14 17.64 16 25 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 26 H -0.27 -6.61 6.70 56.52 0.38 -6.24 16 27 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 28 C 0.11 2.10 6.61 -3.06 -0.02 2.08 16 29 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.35 8.12 -51.93 -0.42 -0.08 16 31 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.42 2.65 8.25 -40.82 -0.34 2.31 16 33 H 0.18 1.84 5.40 -52.49 -0.28 1.55 16 34 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 35 H 0.17 2.28 5.08 -52.48 -0.27 2.02 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 38 H 0.03 0.61 5.28 -51.93 -0.27 0.34 16 39 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 42 H 0.04 0.74 7.77 -51.93 -0.40 0.34 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -33.20 352.11 -7.12 -40.32 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.81 Total: 0.50 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.64 Total: -2.53 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.35 Total: -45.42 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.19 Total: -15.82 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.20 -7.12 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230246116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.061 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds