Wall clock time and date at job start Tue Mar 31 2020 18:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21293 * 119.99941 * 2 1 4 4 N 1.34777 * 119.99887 * 180.02562 * 2 1 3 5 5 C 1.40121 * 119.99676 * 183.99595 * 4 2 1 6 6 C 1.38721 * 120.09064 * 20.07177 * 5 4 2 7 7 C 1.38197 * 119.98354 * 180.27195 * 6 5 4 8 8 C 1.38284 * 120.16405 * 359.74271 * 7 6 5 9 9 N 1.48016 * 119.90980 * 180.02562 * 8 7 6 10 10 O 1.21800 * 119.99821 * 180.02562 * 9 8 7 11 11 O 1.21806 * 120.00084 * 0.02562 * 9 8 7 12 12 C 1.38241 * 120.17514 * 0.02562 * 8 7 6 13 13 C 1.38545 * 120.01807 * 359.97438 * 12 8 7 14 14 O 1.35978 * 120.08223 * 179.97438 * 13 12 8 15 15 C 1.42904 * 117.00036 * 0.66268 * 14 13 12 16 16 H 1.08996 * 110.63927 * 321.07979 * 15 14 13 17 17 C 1.55151 * 110.71934 * 197.74547 * 15 14 13 18 18 C 1.55131 * 101.48531 * 205.96817 * 17 15 14 19 19 N 1.47425 * 104.72166 * 37.29871 * 18 17 15 20 20 C 1.36934 * 125.65043 * 155.82031 * 19 18 17 21 21 H 1.08006 * 120.00001 * 208.47907 * 20 19 18 22 22 C 1.38809 * 119.99967 * 28.47531 * 20 19 18 23 23 N 1.31619 * 119.99708 * 197.52428 * 22 20 19 24 24 Si 1.86798 * 120.00284 * 17.52581 * 22 20 19 25 25 H 1.48496 * 109.47001 * 274.89497 * 24 22 20 26 26 H 1.48501 * 109.46822 * 34.88818 * 24 22 20 27 27 H 1.48500 * 109.47330 * 154.88971 * 24 22 20 28 28 C 1.47025 * 108.70232 * 335.55002 * 19 18 17 29 29 H 1.08998 * 109.46837 * 239.99892 * 1 2 3 30 30 H 1.08997 * 109.47015 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47134 * 119.99747 * 1 2 3 32 32 H 0.96995 * 120.00035 * 3.99252 * 4 2 1 33 33 H 1.07998 * 120.01040 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.92065 * 179.76329 * 7 6 5 35 35 H 1.08004 * 119.98977 * 179.97438 * 12 8 7 36 36 H 1.08996 * 111.00946 * 324.20979 * 17 15 14 37 37 H 1.09008 * 111.00592 * 88.02435 * 17 15 14 38 38 H 1.08999 * 110.49915 * 278.45322 * 18 17 15 39 39 H 1.09003 * 110.34177 * 156.05695 * 18 17 15 40 40 H 0.97004 * 119.99741 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.88228 * 120.70236 * 28 19 18 42 42 H 1.08998 * 109.88532 * 241.72079 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5796 -1.1687 0.0840 6 6 4.2477 -0.0573 0.5767 7 6 5.6275 -0.0590 0.6539 8 6 6.3449 -1.1686 0.2460 9 7 7.8226 -1.1645 0.3316 10 8 8.4561 -2.1408 -0.0277 11 8 8.4051 -0.1849 0.7614 12 6 5.6857 -2.2815 -0.2416 13 6 4.3026 -2.2878 -0.3222 14 8 3.6528 -3.3817 -0.8020 15 6 4.4584 -4.4957 -1.1920 16 1 5.3686 -4.1571 -1.6870 17 6 3.6572 -5.4590 -2.1071 18 6 4.3818 -6.8058 -1.8475 19 7 4.7192 -6.7793 -0.4126 20 6 4.9314 -7.8772 0.3778 21 1 4.7211 -7.8295 1.4361 22 6 5.4166 -9.0515 -0.1812 23 7 5.3003 -10.1883 0.4719 24 14 6.2346 -9.0184 -1.8602 25 1 5.1971 -9.1137 -2.9183 26 1 6.9880 -7.7485 -2.0187 27 1 7.1691 -10.1664 -1.9783 28 6 4.7964 -5.3787 0.0277 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3634 -0.5138 -0.8901 32 1 1.6977 -2.0062 -0.0594 33 1 3.6900 0.8109 0.8954 34 1 6.1469 0.8083 1.0340 35 1 6.2490 -3.1464 -0.5598 36 1 2.6120 -5.5087 -1.8021 37 1 3.7431 -5.1658 -3.1535 38 1 5.2882 -6.8738 -2.4491 39 1 3.7172 -7.6419 -2.0655 40 1 5.6390 -11.0090 0.0811 41 1 4.0752 -5.2006 0.8254 42 1 5.8030 -5.1563 0.3817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230246116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:32 Heat of formation + Delta-G solvation = -29.725607 kcal Electronic energy + Delta-G solvation = -29029.058679 eV Core-core repulsion = 24785.482851 eV Total energy + Delta-G solvation = -4243.575828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.34620 -42.23322 -40.92851 -39.43671 -37.99552 -37.70938 -36.22357 -34.51950 -32.64558 -32.04364 -31.19070 -30.24917 -29.81649 -27.26437 -26.39290 -24.67495 -23.63518 -22.77291 -22.08309 -21.65938 -20.80159 -19.85662 -19.31087 -19.07823 -18.66535 -18.24309 -18.20858 -17.38977 -17.04410 -16.64358 -16.48694 -15.86768 -15.79606 -15.38175 -15.06385 -15.02677 -14.73609 -14.14675 -14.04745 -13.90581 -13.79740 -13.40439 -13.28010 -13.18251 -13.11710 -12.89160 -12.76293 -12.51096 -12.39711 -12.35219 -12.21156 -12.12728 -11.92760 -11.79491 -11.53607 -11.02318 -10.84742 -10.19403 -9.36292 -9.03185 -8.24923 -5.63097 -1.38282 -0.18292 0.11321 0.29841 1.27999 1.35026 1.39024 1.46827 1.58756 1.78316 2.16714 2.36394 3.00760 3.15510 3.20437 3.40084 3.45239 3.48665 3.56802 3.62028 3.85802 3.91873 4.09425 4.23396 4.29001 4.43361 4.51649 4.58613 4.62238 4.65843 4.72670 4.78197 4.84383 4.85692 4.87974 5.09569 5.11832 5.14504 5.33461 5.67772 5.91246 6.05653 6.17423 6.43239 6.68367 6.85692 7.43336 8.00124 8.95087 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.003719 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.289002 B = 7528.072336 C = 9490.488857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.556 6.556 4 N -0.651 5.651 5 C 0.187 3.813 6 C -0.111 4.111 7 C -0.053 4.053 8 C -0.046 4.046 9 N 0.034 4.966 10 O -0.210 6.210 11 O -0.152 6.152 12 C -0.134 4.134 13 C 0.102 3.898 14 O -0.285 6.285 15 C 0.080 3.920 16 H 0.097 0.903 17 C -0.101 4.101 18 C 0.101 3.899 19 N -0.622 5.622 20 C -0.246 4.246 21 H 0.050 0.950 22 C -0.026 4.026 23 N -0.954 5.954 24 Si 0.949 3.051 25 H -0.258 1.258 26 H -0.267 1.267 27 H -0.307 1.307 28 C 0.110 3.890 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.435 0.565 33 H 0.190 0.810 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.029 0.971 39 H 0.056 0.944 40 H 0.266 0.734 41 H 0.040 0.960 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 23.478 -4.867 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.304 3.696 3 O -0.434 6.434 4 N -0.296 5.296 5 C 0.088 3.912 6 C -0.132 4.132 7 C -0.072 4.072 8 C -0.130 4.130 9 N 0.548 4.452 10 O -0.414 6.414 11 O -0.373 6.373 12 C -0.154 4.154 13 C 0.053 3.947 14 O -0.198 6.198 15 C 0.023 3.977 16 H 0.114 0.886 17 C -0.139 4.139 18 C -0.023 4.023 19 N -0.350 5.350 20 C -0.374 4.374 21 H 0.068 0.932 22 C -0.222 4.222 23 N -0.599 5.599 24 Si 0.776 3.224 25 H -0.183 1.183 26 H -0.193 1.193 27 H -0.235 1.235 28 C -0.016 4.016 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.275 0.725 33 H 0.207 0.793 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.452 23.884 -4.908 27.379 hybrid contribution 1.527 -1.376 -0.235 2.068 sum -10.926 22.509 -5.143 25.543 Atomic orbital electron populations 1.22016 0.86098 1.07215 1.07111 1.22002 0.92843 0.81642 0.73067 1.90628 1.71108 1.32593 1.49081 1.43791 1.03139 1.12125 1.70531 1.17628 0.84904 0.92390 0.96321 1.21699 0.92534 0.99511 0.99411 1.21151 0.93947 0.96606 0.95539 1.20873 0.78002 0.99831 1.14336 1.43838 1.04425 0.99581 0.97354 1.94589 1.67756 1.26046 1.53037 1.94471 1.71763 1.24863 1.46191 1.20910 0.93879 0.99107 1.01526 1.18302 0.88989 0.88732 0.98642 1.86089 1.34893 1.21456 1.77334 1.23526 0.95162 0.83778 0.95187 0.88562 1.22821 1.00223 0.90906 0.99977 1.22223 0.97110 0.98023 0.84981 1.44634 1.82298 1.01004 1.07047 1.18456 1.37741 0.89013 0.92218 0.93180 1.25907 0.99162 0.94941 1.02148 1.69916 1.49631 0.98794 1.41579 0.85862 0.79284 0.76372 0.80845 1.18342 1.19265 1.23491 1.21952 0.98645 0.84796 0.96175 0.86453 0.87936 0.86554 0.72491 0.79325 0.80723 0.82828 0.88352 0.86670 0.95309 0.92526 0.92527 0.94166 0.95513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.32 71.24 0.74 0.22 16 2 C 0.51 6.22 7.80 87.66 0.68 6.91 16 3 O -0.56 -10.79 13.96 -3.07 -0.04 -10.83 16 4 N -0.65 -8.32 5.33 -303.13 -1.61 -9.93 16 5 C 0.19 3.48 6.52 38.19 0.25 3.73 16 6 C -0.11 -2.06 8.79 22.38 0.20 -1.86 16 7 C -0.05 -1.05 9.55 22.27 0.21 -0.84 16 8 C -0.05 -1.17 6.85 36.39 0.25 -0.92 16 9 N 0.03 1.05 4.45 -46.43 -0.21 0.84 16 10 O -0.21 -7.30 18.44 18.89 0.35 -6.95 16 11 O -0.15 -4.52 18.44 18.88 0.35 -4.17 16 12 C -0.13 -3.40 8.36 22.34 0.19 -3.21 16 13 C 0.10 2.25 6.63 22.60 0.15 2.40 16 14 O -0.29 -6.33 9.24 -93.31 -0.86 -7.20 16 15 C 0.08 2.15 2.78 31.78 0.09 2.24 16 16 H 0.10 2.44 6.33 -2.39 -0.02 2.42 16 17 C -0.10 -2.59 6.82 32.06 0.22 -2.37 16 18 C 0.10 3.79 4.80 86.93 0.42 4.20 16 19 N -0.62 -28.50 3.08 -691.53 -2.13 -30.63 16 20 C -0.25 -13.96 10.55 84.03 0.89 -13.07 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 22 C -0.03 -1.49 5.46 84.86 0.46 -1.03 16 23 N -0.95 -59.39 13.97 21.65 0.30 -59.09 16 24 Si 0.95 45.39 24.38 68.60 1.67 47.06 16 25 H -0.26 -11.20 6.86 99.48 0.68 -10.52 16 26 H -0.27 -12.41 6.70 99.48 0.67 -11.74 16 27 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 28 C 0.11 4.06 6.61 86.73 0.57 4.63 16 29 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.10 0.35 8.12 -2.39 -0.02 0.33 16 31 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 32 H 0.44 3.80 8.25 -92.71 -0.76 3.04 16 33 H 0.19 3.35 5.40 -2.91 -0.02 3.34 16 34 H 0.18 2.82 7.60 -2.91 -0.02 2.79 16 35 H 0.15 4.26 5.08 -2.91 -0.01 4.24 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.03 1.11 5.28 -2.39 -0.01 1.10 16 39 H 0.06 2.24 7.48 -2.39 -0.02 2.22 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.04 1.51 8.06 -2.39 -0.02 1.49 16 42 H 0.03 1.05 7.77 -2.39 -0.02 1.04 16 Total: -1.00 -75.53 352.11 3.39 -72.14 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.26 Total: 7.74 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.31 Total: 1.02 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -3.65 Total: -98.82 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.21 Total: -29.15 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.06 kcal Total: -75.53 3.39 -72.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230246116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.417 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds