Wall clock time and date at job start Tue Mar 31 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.47308 * 2 1 4 4 C 1.34231 * 116.99946 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00074 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.62520 * 29.59958 * 6 4 3 8 8 C 1.53242 * 109.63317 * 149.99474 * 6 4 3 9 9 N 1.46469 * 109.86081 * 181.90499 * 8 6 4 10 10 C 1.46898 * 111.00086 * 162.23225 * 9 8 6 11 11 C 1.50701 * 109.47113 * 170.00053 * 10 9 8 12 12 C 1.37643 * 120.12835 * 260.02267 * 11 10 9 13 13 C 1.38605 * 120.25093 * 179.97438 * 12 11 10 14 14 C 1.38664 * 120.49895 * 359.97438 * 13 12 11 15 15 C 1.37590 * 120.25059 * 0.02562 * 14 13 12 16 16 C 1.40698 * 120.12987 * 79.99804 * 11 10 9 17 17 C 1.41398 * 120.23847 * 0.02562 * 16 11 10 18 18 H 1.07991 * 120.00204 * 334.18289 * 17 16 11 19 19 C 1.39945 * 119.99485 * 154.18689 * 17 16 11 20 20 N 1.30820 * 120.00362 * 343.53179 * 19 17 16 21 21 Si 1.86800 * 119.99690 * 163.52876 * 19 17 16 22 22 H 1.48500 * 109.47072 * 90.00336 * 21 19 17 23 23 H 1.48508 * 109.47218 * 210.00312 * 21 19 17 24 24 H 1.48498 * 109.47322 * 330.00159 * 21 19 17 25 25 C 1.46470 * 112.55561 * 287.34507 * 9 8 6 26 26 C 1.53240 * 109.86226 * 72.65843 * 25 9 8 27 27 S 1.81902 * 109.78958 * 269.10723 * 6 4 3 28 28 H 1.08997 * 109.47196 * 59.99527 * 1 2 3 29 29 H 1.08992 * 109.47199 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46625 * 300.00018 * 1 2 3 31 31 H 1.09004 * 109.46625 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.47196 * 120.00473 * 2 1 3 33 33 H 1.09002 * 109.40431 * 61.78340 * 8 6 4 34 34 H 1.09007 * 109.40825 * 302.02584 * 8 6 4 35 35 H 1.09000 * 109.46869 * 50.00267 * 10 9 8 36 36 H 1.08998 * 109.47610 * 290.00507 * 10 9 8 37 37 H 1.08003 * 119.87298 * 359.97438 * 12 11 10 38 38 H 1.07996 * 119.75223 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.87311 * 180.27875 * 14 13 12 40 40 H 1.07996 * 120.13101 * 180.02562 * 15 14 13 41 41 H 0.97001 * 119.99960 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.40114 * 192.77325 * 25 9 8 43 43 H 1.09004 * 109.40727 * 312.53257 * 25 9 8 44 44 H 1.09000 * 109.63432 * 178.29039 * 26 25 9 45 45 H 1.09001 * 109.79883 * 57.79214 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 1 3.2362 3.6166 0.5079 8 6 5.2731 2.9349 0.7211 9 7 5.8164 4.2944 0.7644 10 6 6.8675 4.4090 1.7841 11 6 7.5683 5.7350 1.6363 12 6 8.7813 5.8071 0.9898 13 6 9.4278 7.0254 0.8519 14 6 8.8619 8.1840 1.3619 15 6 7.6502 8.1357 2.0119 16 6 6.9850 6.9041 2.1583 17 6 5.7393 6.8421 2.8244 18 1 5.0430 6.0492 2.5948 19 6 5.4087 7.8085 3.7812 20 7 6.3429 8.5661 4.2956 21 14 3.6333 8.0165 4.3237 22 1 3.3640 7.1322 5.4858 23 1 3.3968 9.4303 4.7121 24 1 2.7278 7.6526 3.2044 25 6 6.3002 4.7478 -0.5416 26 6 5.1121 5.0398 -1.4643 27 16 4.1802 3.4972 -1.7112 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.9666 2.2844 0.1882 34 1 5.1406 2.5653 1.7380 35 1 7.5879 3.6011 1.6558 36 1 6.4204 4.3429 2.7760 37 1 9.2310 4.9110 0.5883 38 1 10.3790 7.0727 0.3428 39 1 9.3722 9.1286 1.2449 40 1 7.2110 9.0393 2.4080 41 1 6.1136 9.2361 4.9585 42 1 6.8910 5.6550 -0.4139 43 1 6.9225 3.9715 -0.9869 44 1 5.4754 5.4057 -2.4246 45 1 4.4655 5.7892 -1.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235525618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:39 Heat of formation + Delta-G solvation = -60.387540 kcal Electronic energy + Delta-G solvation = -26911.580437 eV Core-core repulsion = 23212.968222 eV Total energy + Delta-G solvation = -3698.612214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61469 -38.67001 -37.08763 -36.49274 -33.68074 -32.48357 -31.64080 -31.27530 -29.57653 -29.03069 -25.69981 -24.77661 -24.08360 -23.05955 -21.30124 -21.03327 -20.65713 -19.42588 -17.91147 -17.34702 -17.17994 -16.65327 -16.03126 -15.47321 -15.03129 -14.89341 -14.55102 -14.38035 -14.20286 -13.67705 -13.62581 -13.29949 -13.15693 -13.05783 -12.85941 -12.61723 -12.10191 -11.96624 -11.88934 -11.69126 -11.59820 -11.58425 -11.35536 -11.11578 -11.06746 -10.82605 -10.72255 -10.64176 -10.47681 -10.32763 -9.68698 -9.57458 -9.35035 -9.18370 -7.96540 -7.64908 -7.41491 -7.38059 -6.78529 -4.37136 1.18744 2.29274 2.46949 2.61959 2.74209 2.88424 3.06543 3.10897 3.21754 3.92086 4.21533 4.48194 4.62282 4.69292 4.72635 4.79785 5.02430 5.09332 5.22317 5.40089 5.44686 5.51519 5.52900 5.61026 5.69008 5.72745 5.83827 5.97158 6.01606 6.16771 6.22949 6.27112 6.31250 6.42305 6.53003 6.78851 7.07155 7.20278 7.31348 7.44337 7.45950 7.58455 7.61552 7.86302 8.02471 8.08246 8.26175 8.62877 8.88727 8.94821 10.15737 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003830 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.926273 B = 7308.364633 C = 8811.983854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.350 6.350 4 C 0.490 3.510 5 O -0.494 6.494 6 C -0.049 4.049 7 H 0.129 0.871 8 C 0.072 3.928 9 N -0.537 5.537 10 C 0.132 3.868 11 C -0.208 4.208 12 C -0.084 4.084 13 C -0.246 4.246 14 C -0.104 4.104 15 C -0.163 4.163 16 C 0.131 3.869 17 C -0.446 4.446 18 H 0.091 0.909 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.903 3.097 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.259 1.259 25 C 0.051 3.949 26 C -0.068 4.068 27 S -0.238 6.238 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.020 0.980 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.280 0.720 42 H 0.114 0.886 43 H 0.039 0.961 44 H 0.108 0.892 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.913 -9.705 -6.626 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.267 6.267 4 C 0.330 3.670 5 O -0.381 6.381 6 C -0.178 4.178 7 H 0.147 0.853 8 C -0.058 4.058 9 N -0.262 5.262 10 C 0.007 3.993 11 C -0.210 4.210 12 C -0.103 4.103 13 C -0.266 4.266 14 C -0.123 4.123 15 C -0.182 4.182 16 C 0.128 3.872 17 C -0.475 4.475 18 H 0.109 0.891 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.183 1.183 25 C -0.078 4.078 26 C -0.217 4.217 27 S -0.012 6.012 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.131 0.869 43 H 0.057 0.943 44 H 0.127 0.873 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.400 -10.017 -7.272 14.960 hybrid contribution 0.280 0.147 1.243 1.282 sum -8.119 -9.871 -6.030 14.132 Atomic orbital electron populations 1.21807 0.92467 1.02921 1.03753 1.23065 0.95499 0.80034 1.02664 1.86528 1.23890 1.32479 1.83774 1.22641 0.80817 0.91060 0.72468 1.90662 1.60450 1.42424 1.44579 1.22872 1.01875 0.94044 0.99037 0.85309 1.21991 0.92001 0.91337 1.00503 1.61146 1.37387 1.20792 1.06836 1.20616 0.89890 0.94388 0.94363 1.19369 0.96692 0.93622 1.11295 1.20398 0.95162 0.95846 0.98915 1.20301 1.01324 0.93499 1.11434 1.20696 0.96444 0.96184 0.98948 1.21366 0.95998 0.98530 1.02331 1.17369 0.91788 0.89672 0.88398 1.19747 1.01336 1.09457 1.16976 0.89056 1.25967 0.98801 0.94276 0.95269 1.69828 1.34046 1.16894 1.21131 0.86391 0.83049 0.78149 0.79656 1.19613 1.20304 1.18288 1.22332 0.94721 1.02709 0.88085 1.23696 0.99479 0.95036 1.03476 1.86774 1.74920 1.32127 1.07377 0.91334 0.90228 0.91330 0.91159 0.91102 0.92573 0.89621 0.96173 0.90112 0.89840 0.89727 0.89651 0.86551 0.90959 0.86866 0.94330 0.87334 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.35 -4.59 10.22 -39.26 -0.40 -4.99 16 4 C 0.49 7.20 7.05 36.01 0.25 7.45 16 5 O -0.49 -8.14 15.98 -18.75 -0.30 -8.44 16 6 C -0.05 -0.71 3.23 -27.76 -0.09 -0.80 16 7 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 8 C 0.07 1.11 4.24 -3.93 -0.02 1.10 16 9 N -0.54 -9.24 4.29 -236.48 -1.01 -10.26 16 10 C 0.13 2.52 4.53 -4.98 -0.02 2.50 16 11 C -0.21 -4.51 3.72 -103.91 -0.39 -4.89 16 12 C -0.08 -1.75 8.38 -39.66 -0.33 -2.09 16 13 C -0.25 -5.23 10.05 -39.29 -0.39 -5.63 16 14 C -0.10 -2.34 10.02 -39.66 -0.40 -2.73 16 15 C -0.16 -4.00 8.68 -38.88 -0.34 -4.34 16 16 C 0.13 3.18 5.56 -106.82 -0.59 2.58 16 17 C -0.45 -10.85 8.18 -37.74 -0.31 -11.16 16 18 H 0.09 2.17 6.85 -52.49 -0.36 1.81 16 19 C 0.07 1.78 5.16 -17.34 -0.09 1.69 16 20 N -0.79 -19.67 10.97 55.55 0.61 -19.06 16 21 Si 0.90 18.09 29.59 -169.99 -5.03 13.06 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 C 0.05 0.83 5.01 -3.93 -0.02 0.81 16 26 C -0.07 -0.98 6.69 37.28 0.25 -0.73 16 27 S -0.24 -3.48 21.76 -107.50 -2.34 -5.82 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.06 0.91 7.70 -51.93 -0.40 0.51 16 34 H 0.09 1.29 7.96 -51.93 -0.41 0.87 16 35 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 36 H 0.08 1.62 7.34 -51.93 -0.38 1.24 16 37 H 0.08 1.57 8.03 -52.48 -0.42 1.15 16 38 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.12 2.99 6.21 -52.49 -0.33 2.66 16 41 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 42 H 0.11 2.09 5.21 -51.93 -0.27 1.82 16 43 H 0.04 0.62 7.92 -51.93 -0.41 0.21 16 44 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -26.55 375.80 -11.44 -37.99 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.76 Total: 7.99 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.87 Total: -16.13 kcal Atomic # 7 Polarization: -28.92 SS G_CDS: -0.40 Total: -29.32 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.70 Total: -13.43 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.34 Total: -5.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.55 -11.44 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.399 kcal (2) G-P(sol) polarization free energy of solvation -26.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds