Wall clock time and date at job start Tue Mar 31 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.47308 * 2 1 4 4 C 1.34231 * 116.99946 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00074 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.62520 * 29.59958 * 6 4 3 8 8 C 1.53242 * 109.63317 * 149.99474 * 6 4 3 9 9 N 1.46469 * 109.86081 * 181.90499 * 8 6 4 10 10 C 1.46898 * 111.00086 * 162.23225 * 9 8 6 11 11 C 1.50701 * 109.47113 * 170.00053 * 10 9 8 12 12 C 1.37643 * 120.12835 * 260.02267 * 11 10 9 13 13 C 1.38605 * 120.25093 * 179.97438 * 12 11 10 14 14 C 1.38664 * 120.49895 * 359.97438 * 13 12 11 15 15 C 1.37590 * 120.25059 * 0.02562 * 14 13 12 16 16 C 1.40698 * 120.12987 * 79.99804 * 11 10 9 17 17 C 1.41398 * 120.23847 * 0.02562 * 16 11 10 18 18 H 1.07991 * 120.00204 * 334.18289 * 17 16 11 19 19 C 1.39945 * 119.99485 * 154.18689 * 17 16 11 20 20 N 1.30820 * 120.00362 * 343.53179 * 19 17 16 21 21 Si 1.86800 * 119.99690 * 163.52876 * 19 17 16 22 22 H 1.48500 * 109.47072 * 90.00336 * 21 19 17 23 23 H 1.48508 * 109.47218 * 210.00312 * 21 19 17 24 24 H 1.48498 * 109.47322 * 330.00159 * 21 19 17 25 25 C 1.46470 * 112.55561 * 287.34507 * 9 8 6 26 26 C 1.53240 * 109.86226 * 72.65843 * 25 9 8 27 27 S 1.81902 * 109.78958 * 269.10723 * 6 4 3 28 28 H 1.08997 * 109.47196 * 59.99527 * 1 2 3 29 29 H 1.08992 * 109.47199 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46625 * 300.00018 * 1 2 3 31 31 H 1.09004 * 109.46625 * 239.99982 * 2 1 3 32 32 H 1.08997 * 109.47196 * 120.00473 * 2 1 3 33 33 H 1.09002 * 109.40431 * 61.78340 * 8 6 4 34 34 H 1.09007 * 109.40825 * 302.02584 * 8 6 4 35 35 H 1.09000 * 109.46869 * 50.00267 * 10 9 8 36 36 H 1.08998 * 109.47610 * 290.00507 * 10 9 8 37 37 H 1.08003 * 119.87298 * 359.97438 * 12 11 10 38 38 H 1.07996 * 119.75223 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.87311 * 180.27875 * 14 13 12 40 40 H 1.07996 * 120.13101 * 180.02562 * 15 14 13 41 41 H 0.97001 * 119.99960 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.40114 * 192.77325 * 25 9 8 43 43 H 1.09004 * 109.40727 * 312.53257 * 25 9 8 44 44 H 1.09000 * 109.63432 * 178.29039 * 26 25 9 45 45 H 1.09001 * 109.79883 * 57.79214 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 1 3.2362 3.6166 0.5079 8 6 5.2731 2.9349 0.7211 9 7 5.8164 4.2944 0.7644 10 6 6.8675 4.4090 1.7841 11 6 7.5683 5.7350 1.6363 12 6 8.7813 5.8071 0.9898 13 6 9.4278 7.0254 0.8519 14 6 8.8619 8.1840 1.3619 15 6 7.6502 8.1357 2.0119 16 6 6.9850 6.9041 2.1583 17 6 5.7393 6.8421 2.8244 18 1 5.0430 6.0492 2.5948 19 6 5.4087 7.8085 3.7812 20 7 6.3429 8.5661 4.2956 21 14 3.6333 8.0165 4.3237 22 1 3.3640 7.1322 5.4858 23 1 3.3968 9.4303 4.7121 24 1 2.7278 7.6526 3.2044 25 6 6.3002 4.7478 -0.5416 26 6 5.1121 5.0398 -1.4643 27 16 4.1802 3.4972 -1.7112 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.9666 2.2844 0.1882 34 1 5.1406 2.5653 1.7380 35 1 7.5879 3.6011 1.6558 36 1 6.4204 4.3429 2.7760 37 1 9.2310 4.9110 0.5883 38 1 10.3790 7.0727 0.3428 39 1 9.3722 9.1286 1.2449 40 1 7.2110 9.0393 2.4080 41 1 6.1136 9.2361 4.9585 42 1 6.8910 5.6550 -0.4139 43 1 6.9225 3.9715 -0.9869 44 1 5.4754 5.4057 -2.4246 45 1 4.4655 5.7892 -1.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235525618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:39 Heat of formation + Delta-G solvation = -71.905495 kcal Electronic energy + Delta-G solvation = -26912.079893 eV Core-core repulsion = 23212.968222 eV Total energy + Delta-G solvation = -3699.111670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72881 -40.21161 -38.46635 -37.73120 -35.45201 -33.69285 -32.82739 -32.36941 -31.32408 -30.50655 -27.35448 -26.19191 -25.43558 -23.93855 -22.81578 -22.50369 -21.92121 -21.04007 -19.08015 -18.92175 -18.49777 -17.73217 -17.20461 -17.09439 -16.52390 -16.23084 -15.96595 -15.74432 -15.52435 -15.15233 -14.85535 -14.48963 -14.39800 -14.31580 -14.24152 -13.62551 -13.42080 -13.30089 -13.15981 -12.98736 -12.94739 -12.90563 -12.72435 -12.61294 -12.52736 -12.40648 -12.15306 -12.00236 -11.63254 -11.57359 -11.30881 -11.09753 -10.97830 -10.85525 -9.35709 -9.19492 -9.09299 -8.83624 -8.55201 -6.20794 0.02560 0.99669 1.11904 1.20035 1.34816 1.42302 1.51738 1.53417 1.58606 2.25158 2.79613 2.96153 3.33238 3.65746 3.83094 3.89329 3.97579 3.99748 4.03997 4.19795 4.23444 4.31275 4.39156 4.42001 4.52061 4.56407 4.64883 4.74536 4.78643 4.82063 4.90813 4.96838 5.01088 5.07718 5.14466 5.29909 5.33918 5.42202 5.56919 5.80389 5.97375 6.05786 6.20595 6.26470 6.29511 6.48894 6.50106 6.82059 7.08326 7.15604 8.40988 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.003830 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.926273 B = 7308.364633 C = 8811.983854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.495 3.505 5 O -0.515 6.515 6 C -0.049 4.049 7 H 0.131 0.869 8 C 0.078 3.922 9 N -0.543 5.543 10 C 0.140 3.860 11 C -0.202 4.202 12 C -0.086 4.086 13 C -0.244 4.244 14 C -0.111 4.111 15 C -0.192 4.192 16 C 0.106 3.894 17 C -0.468 4.468 18 H 0.090 0.910 19 C 0.036 3.964 20 N -0.829 5.829 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.258 1.258 25 C 0.056 3.944 26 C -0.063 4.063 27 S -0.233 6.233 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.283 0.717 42 H 0.092 0.908 43 H 0.045 0.955 44 H 0.131 0.869 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 -11.016 -7.612 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.336 3.664 5 O -0.404 6.404 6 C -0.178 4.178 7 H 0.149 0.851 8 C -0.052 4.052 9 N -0.268 5.268 10 C 0.014 3.986 11 C -0.204 4.204 12 C -0.105 4.105 13 C -0.263 4.263 14 C -0.130 4.130 15 C -0.211 4.211 16 C 0.103 3.897 17 C -0.497 4.497 18 H 0.108 0.892 19 C -0.178 4.178 20 N -0.455 5.455 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.073 4.073 26 C -0.211 4.211 27 S -0.006 6.006 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.149 0.851 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.153 -11.333 -8.271 16.751 hybrid contribution 0.584 0.472 1.468 1.648 sum -8.569 -10.861 -6.803 15.416 Atomic orbital electron populations 1.21839 0.90171 1.04568 1.03755 1.23415 0.97288 0.78521 1.02931 1.86525 1.22811 1.34498 1.83215 1.22537 0.81290 0.90602 0.71959 1.90651 1.61029 1.42964 1.45772 1.22827 1.01405 0.94444 0.99145 0.85131 1.21928 0.92306 0.90133 1.00828 1.61060 1.36826 1.21951 1.06971 1.20463 0.90386 0.93407 0.94356 1.19635 0.96955 0.93944 1.09877 1.20686 0.94729 0.96797 0.98296 1.20649 1.02091 0.93073 1.10467 1.20928 0.95885 0.97649 0.98521 1.21330 0.97420 0.98149 1.04219 1.17652 0.92340 0.90472 0.89247 1.19878 1.01807 1.10216 1.17837 0.89220 1.26665 1.02228 0.93791 0.95102 1.69895 1.35776 1.17815 1.22061 0.85427 0.78427 0.78117 0.79142 1.19157 1.19895 1.18175 1.22256 0.95393 1.01755 0.87936 1.23657 0.98570 0.94823 1.04080 1.86771 1.74849 1.31936 1.07089 0.91317 0.87735 0.91305 0.91017 0.90787 0.92949 0.89341 0.94862 0.91561 0.87296 0.87071 0.88027 0.88648 0.90628 0.88956 0.93715 0.85088 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.29 71.98 0.74 -1.06 16 2 C 0.05 0.95 6.19 71.98 0.45 1.40 16 3 O -0.35 -8.83 10.22 -51.43 -0.53 -9.36 16 4 C 0.50 14.00 7.05 71.24 0.50 14.50 16 5 O -0.52 -16.45 15.98 21.97 0.35 -16.10 16 6 C -0.05 -1.37 3.23 29.93 0.10 -1.28 16 7 H 0.13 3.65 8.14 -2.39 -0.02 3.63 16 8 C 0.08 2.34 4.24 86.47 0.37 2.71 16 9 N -0.54 -18.30 4.29 -902.10 -3.87 -22.17 16 10 C 0.14 5.24 4.53 85.56 0.39 5.63 16 11 C -0.20 -8.70 3.72 -19.40 -0.07 -8.78 16 12 C -0.09 -3.45 8.38 22.22 0.19 -3.27 16 13 C -0.24 -9.94 10.05 22.46 0.23 -9.71 16 14 C -0.11 -4.97 10.02 22.22 0.22 -4.75 16 15 C -0.19 -9.66 8.68 22.73 0.20 -9.46 16 16 C 0.11 5.23 5.56 -21.29 -0.12 5.11 16 17 C -0.47 -23.30 8.18 23.46 0.19 -23.11 16 18 H 0.09 4.35 6.85 -2.91 -0.02 4.33 16 19 C 0.04 1.77 5.16 85.26 0.44 2.21 16 20 N -0.83 -42.35 10.97 21.83 0.24 -42.12 16 21 Si 0.97 37.61 29.59 68.60 2.03 39.64 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 25 C 0.06 1.75 5.01 86.47 0.43 2.18 16 26 C -0.06 -1.72 6.69 72.06 0.48 -1.24 16 27 S -0.23 -6.44 21.76 -56.49 -1.23 -7.67 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 33 H 0.05 1.63 7.70 -2.39 -0.02 1.61 16 34 H 0.09 2.60 7.96 -2.38 -0.02 2.58 16 35 H 0.03 1.15 7.94 -2.39 -0.02 1.13 16 36 H 0.07 2.68 7.34 -2.39 -0.02 2.66 16 37 H 0.11 3.78 8.03 -2.91 -0.02 3.76 16 38 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.10 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.10 5.13 6.21 -2.91 -0.02 5.11 16 41 H 0.28 13.30 8.30 -92.71 -0.77 12.53 16 42 H 0.09 3.33 5.21 -2.38 -0.01 3.32 16 43 H 0.04 1.35 7.92 -2.38 -0.02 1.33 16 44 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -57.03 375.80 2.71 -54.32 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.98 Total: 32.36 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 4.73 Total: -28.91 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -3.63 Total: -64.28 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.17 Total: -25.46 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: -6.44 SS G_CDS: -1.23 Total: -7.67 kcal Total: -57.03 2.71 -54.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235525618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.587 kcal (2) G-P(sol) polarization free energy of solvation -57.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds