Wall clock time and date at job start Tue Mar 31 2020 19:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 116.99643 * 2 1 4 4 C 1.38398 * 119.98465 * 359.97438 * 3 2 1 5 5 C 1.39372 * 119.96732 * 180.02562 * 4 3 2 6 6 C 1.48344 * 120.02632 * 180.02562 * 5 4 3 7 7 N 1.30806 * 126.42324 * 0.02562 * 6 5 4 8 8 O 1.21293 * 110.08817 * 180.02562 * 7 6 5 9 9 C 1.33666 * 110.03802 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.43451 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47450 * 195.02262 * 10 9 8 12 12 N 1.46900 * 109.47270 * 315.02746 * 10 9 8 13 13 C 1.50699 * 109.47079 * 75.02436 * 10 9 8 14 14 H 1.08000 * 120.00274 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00277 * 179.97438 * 13 10 9 16 16 N 1.31521 * 120.00086 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 120.00326 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46803 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47050 * 120.00155 * 17 15 13 20 20 H 1.48492 * 109.47112 * 240.00041 * 17 15 13 21 21 N 1.30969 * 107.13292 * 359.97438 * 9 8 7 22 22 C 1.39359 * 119.93735 * 0.27774 * 5 4 3 23 23 C 1.38397 * 119.97149 * 359.42471 * 22 5 4 24 24 O 1.35994 * 119.98528 * 180.26949 * 23 22 5 25 25 C 1.42899 * 117.00600 * 0.32734 * 24 23 22 26 26 C 1.39107 * 119.98424 * 180.02562 * 3 2 1 27 27 O 1.36021 * 119.96974 * 359.97244 * 26 3 2 28 28 C 1.42894 * 116.99811 * 90.00130 * 27 26 3 29 29 H 1.08995 * 109.47765 * 300.00166 * 1 2 3 30 30 H 1.08999 * 109.47030 * 60.00545 * 1 2 3 31 31 H 1.09006 * 109.46555 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.01820 * 0.04994 * 4 3 2 33 33 H 1.00901 * 110.99505 * 296.04437 * 12 10 9 34 34 H 1.00892 * 110.99866 * 59.99467 * 12 10 9 35 35 H 0.96999 * 120.00089 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.01238 * 179.69509 * 22 5 4 37 37 H 1.08996 * 109.47906 * 179.97438 * 25 24 23 38 38 H 1.09002 * 109.46834 * 299.99900 * 25 24 23 39 39 H 1.09007 * 109.46551 * 59.99227 * 25 24 23 40 40 H 1.09000 * 109.47479 * 300.00100 * 28 27 26 41 41 H 1.09005 * 109.47156 * 60.00032 * 28 27 26 42 42 H 1.08998 * 109.47063 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2922 2.3723 -0.0005 5 6 1.9252 3.6139 -0.0011 6 6 1.1182 4.8586 -0.0011 7 7 -0.1875 4.9376 -0.0001 8 8 -0.5345 6.0998 -0.0010 9 6 0.5377 6.8980 -0.0031 10 6 0.5317 8.4049 -0.0052 11 1 1.5225 8.7719 -0.2730 12 7 -0.4510 8.8893 -0.9838 13 6 0.1638 8.9077 1.3670 14 1 -0.0444 8.2062 2.1613 15 6 0.0940 10.2633 1.6087 16 7 0.3490 11.1177 0.6418 17 14 -0.3626 10.8866 3.3094 18 1 -0.5989 9.7318 4.2128 19 1 0.7457 11.7162 3.8467 20 1 -1.5971 11.7071 3.2209 21 7 1.5945 6.1244 -0.0030 22 6 3.3170 3.6850 -0.0069 23 6 4.0687 2.5230 -0.0002 24 8 5.4268 2.5920 -0.0003 25 6 6.0102 3.8965 -0.0004 26 6 3.4355 1.2843 -0.0005 27 8 4.1755 0.1430 -0.0005 28 6 4.5279 -0.4016 -1.2737 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 0.2137 2.3157 -0.0001 33 1 -0.1913 8.6196 -1.9208 34 1 -1.3782 8.5624 -0.7574 35 1 0.3003 12.0714 0.8120 36 1 3.8088 4.6465 -0.0123 37 1 7.0966 3.8088 -0.0001 38 1 5.6894 4.4379 -0.8904 39 1 5.6894 4.4380 0.8896 40 1 3.6217 -0.6402 -1.8304 41 1 5.1152 0.3282 -1.8311 42 1 5.1155 -1.3085 -1.1309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248225328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:54 Heat of formation + Delta-G solvation = -6.268980 kcal Electronic energy + Delta-G solvation = -28645.358722 eV Core-core repulsion = 24402.800050 eV Total energy + Delta-G solvation = -4242.558672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.94483 -40.95129 -39.19416 -37.92260 -36.93800 -35.45068 -34.65183 -32.19424 -31.15646 -30.12997 -29.78031 -28.02227 -27.28758 -26.78478 -26.55109 -24.05548 -23.83873 -22.32485 -21.93053 -20.54545 -18.74065 -17.69757 -17.56986 -17.27986 -16.81561 -16.57807 -16.42398 -16.35413 -15.69815 -15.17506 -15.12018 -14.89879 -14.71607 -14.69290 -14.62964 -13.75475 -13.33463 -13.19441 -12.90540 -12.85447 -12.38153 -12.18560 -12.04915 -11.78781 -11.73992 -11.68683 -11.48713 -11.27423 -11.07399 -10.96014 -10.62508 -10.55209 -10.23056 -10.11207 -9.80400 -9.18516 -8.66776 -8.39036 -8.27980 -7.70035 -6.14692 -4.32734 0.56565 1.16635 1.85619 2.58766 2.71439 3.22893 3.31570 3.35292 3.42015 3.42578 3.52290 3.70971 3.84936 4.29058 4.41401 4.79267 4.84029 4.93596 4.96002 4.97521 5.07846 5.08646 5.13832 5.18336 5.23509 5.26030 5.29112 5.36053 5.41588 5.53303 5.80919 5.89039 5.96353 6.11324 6.20461 6.38149 6.47943 6.80788 6.94076 7.02772 7.49832 7.60963 7.74154 8.17205 8.58102 8.67323 8.78334 9.37742 10.89934 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.002837 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.099532 B = 9868.883445 C =10748.047376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.301 6.301 3 C 0.146 3.854 4 C -0.203 4.203 5 C 0.072 3.928 6 C 0.189 3.811 7 N -0.392 5.392 8 O 0.072 5.928 9 C 0.205 3.795 10 C 0.309 3.691 11 H 0.089 0.911 12 N -0.798 5.798 13 C -0.544 4.544 14 H 0.060 0.940 15 C 0.091 3.909 16 N -0.840 5.840 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.280 1.280 21 N -0.497 5.497 22 C -0.191 4.191 23 C 0.148 3.852 24 O -0.302 6.302 25 C 0.021 3.979 26 C 0.037 3.963 27 O -0.312 6.312 28 C 0.035 3.965 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.307 0.693 34 H 0.331 0.669 35 H 0.262 0.738 36 H 0.151 0.849 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -18.407 -4.842 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.100 3.900 4 C -0.224 4.224 5 C 0.070 3.930 6 C -0.081 4.081 7 N -0.102 5.102 8 O 0.014 5.986 9 C -0.017 4.017 10 C 0.196 3.804 11 H 0.106 0.894 12 N -0.324 5.324 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.119 4.119 16 N -0.473 5.473 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.206 1.206 21 N -0.230 5.230 22 C -0.212 4.212 23 C 0.101 3.899 24 O -0.214 6.214 25 C -0.073 4.073 26 C -0.009 4.009 27 O -0.228 6.228 28 C -0.059 4.059 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.072 0.928 36 H 0.169 0.831 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.960 -18.660 -4.532 20.106 hybrid contribution -0.843 0.047 0.512 0.987 sum 5.117 -18.613 -4.020 19.718 Atomic orbital electron populations 1.23165 0.77914 1.04152 1.01968 1.86138 1.21569 1.25421 1.88294 1.18678 0.90427 0.84760 0.96136 1.21042 1.00836 0.90234 1.10290 1.16809 0.90969 0.87621 0.97637 1.23747 0.88027 0.93145 1.03137 1.74767 1.14634 0.98991 1.21765 1.85221 1.36738 1.10914 1.65710 1.32236 0.78660 1.01583 0.89240 1.18430 0.96283 0.70920 0.94760 0.89385 1.59149 1.04867 1.65523 1.02900 1.20664 1.52707 0.92165 0.92795 0.92223 1.24865 0.93740 0.96389 0.96861 1.70083 1.44150 1.02005 1.31071 0.86482 0.78298 0.78982 0.83902 1.19705 1.20723 1.20628 1.72039 1.29474 0.98800 1.22715 1.21149 0.92995 0.98314 1.08745 1.18733 0.83295 0.92070 0.95801 1.86129 1.15925 1.31237 1.88151 1.23205 0.99023 0.82781 1.02327 1.17013 0.86294 0.84774 1.12783 1.86136 1.70217 1.37560 1.28840 1.22982 0.99551 0.98456 0.84952 0.92175 0.92344 0.87869 0.83896 0.88181 0.85623 0.92813 0.83104 0.87862 0.92104 0.91893 0.93750 0.93654 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.78 10.27 -34.47 -0.35 -4.14 16 3 C 0.15 2.06 6.69 -39.20 -0.26 1.80 16 4 C -0.20 -2.98 8.67 -39.10 -0.34 -3.32 16 5 C 0.07 1.19 5.88 -104.90 -0.62 0.57 16 6 C 0.19 3.66 7.80 -156.09 -1.22 2.44 16 7 N -0.39 -7.71 11.85 30.98 0.37 -7.34 16 8 O 0.07 1.48 11.27 18.05 0.20 1.69 16 9 C 0.20 4.36 7.22 -12.99 -0.09 4.27 16 10 C 0.31 7.11 3.16 -70.02 -0.22 6.89 16 11 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 12 N -0.80 -16.88 8.53 -6.65 -0.06 -16.93 16 13 C -0.54 -13.96 8.71 -34.44 -0.30 -14.26 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.09 2.34 5.39 -17.82 -0.10 2.24 16 16 N -0.84 -22.46 12.77 55.43 0.71 -21.75 16 17 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 N -0.50 -10.35 11.25 -9.87 -0.11 -10.46 16 22 C -0.19 -2.89 8.68 -39.11 -0.34 -3.23 16 23 C 0.15 2.12 6.69 -39.20 -0.26 1.85 16 24 O -0.30 -3.91 10.27 -34.45 -0.35 -4.27 16 25 C 0.02 0.21 9.81 101.05 0.99 1.20 16 26 C 0.04 0.55 5.75 -38.94 -0.22 0.32 16 27 O -0.31 -4.39 9.97 -45.19 -0.45 -4.84 16 28 C 0.04 0.36 11.13 101.05 1.12 1.49 16 29 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 1.96 6.08 -52.49 -0.32 1.64 16 33 H 0.31 5.68 9.06 -39.29 -0.36 5.33 16 34 H 0.33 6.67 8.96 -39.30 -0.35 6.32 16 35 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.15 2.22 6.09 -52.48 -0.32 1.90 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.55 7.64 -51.93 -0.40 0.16 16 39 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -30.16 368.17 -5.40 -35.56 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.02 Total: 8.35 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.86 Total: 3.45 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.91 Total: -56.48 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.95 Total: -11.55 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.16 -5.40 -35.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248225328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.294 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds