Wall clock time and date at job start Tue Mar 31 2020 18:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00080 * 2 1 4 4 O 1.21283 * 119.99963 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00229 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47379 * 300.00950 * 5 3 2 7 7 C 1.53002 * 109.47046 * 60.00173 * 5 3 2 8 8 N 1.46501 * 109.47374 * 180.02562 * 5 3 2 9 9 C 1.34778 * 119.99793 * 155.00126 * 8 5 3 10 10 O 1.21357 * 120.00415 * 0.02562 * 9 8 5 11 11 C 1.49353 * 119.99607 * 179.97438 * 9 8 5 12 12 O 1.21377 * 120.00432 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99937 * 179.72510 * 11 9 8 14 14 C 1.39727 * 120.00148 * 175.76965 * 13 11 9 15 15 C 1.39013 * 120.04025 * 214.86434 * 14 13 11 16 16 C 1.38144 * 120.06292 * 179.71895 * 15 14 13 17 17 C 1.38184 * 120.13810 * 0.55815 * 16 15 14 18 18 C 1.38921 * 120.08393 * 359.71714 * 17 16 15 19 19 O 1.35752 * 120.02829 * 179.97438 * 18 17 16 20 20 C 1.34826 * 117.00333 * 5.36569 * 19 18 17 21 21 H 1.08001 * 119.99678 * 354.96852 * 20 19 18 22 22 C 1.38655 * 120.00231 * 174.96492 * 20 19 18 23 23 N 1.31555 * 120.00073 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99606 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47193 * 90.00138 * 24 22 20 26 26 H 1.48503 * 109.47403 * 209.99992 * 24 22 20 27 27 H 1.48506 * 109.47584 * 330.00159 * 24 22 20 28 28 C 1.38758 * 119.93559 * 0.02562 * 18 17 16 29 29 H 1.08997 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46995 * 299.99423 * 1 2 3 31 31 H 1.08996 * 109.47203 * 59.99411 * 1 2 3 32 32 H 0.96999 * 119.99753 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47107 * 60.00343 * 7 5 3 34 34 H 1.08993 * 109.47593 * 179.97438 * 7 5 3 35 35 H 1.09001 * 109.46970 * 300.00725 * 7 5 3 36 36 H 0.96993 * 119.99994 * 334.99998 * 8 5 3 37 37 H 0.97004 * 119.99938 * 355.77475 * 13 11 9 38 38 H 1.08002 * 119.97583 * 0.02562 * 15 14 13 39 39 H 1.07996 * 119.93531 * 180.27371 * 16 15 14 40 40 H 1.08004 * 119.95688 * 179.74236 * 17 16 15 41 41 H 0.96998 * 119.99801 * 180.02562 * 23 22 20 42 42 H 1.07999 * 120.07171 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0089 0.6534 0.8908 7 6 4.1563 0.4457 -1.2483 8 7 4.1342 2.5484 0.0011 9 6 5.3560 2.8310 0.4949 10 8 6.0518 1.9412 0.9387 11 6 5.8541 4.2390 0.4949 12 8 5.1588 5.1288 0.0497 13 7 7.0736 4.5224 0.9937 14 6 7.5761 5.8238 0.9137 15 6 8.9364 6.0338 0.7192 16 6 9.4328 7.3202 0.6342 17 6 8.5812 8.4018 0.7537 18 6 7.2215 8.1988 0.9540 19 8 6.3860 9.2622 1.0718 20 6 6.9194 10.4847 0.8746 21 1 7.9824 10.5907 0.7154 22 6 6.1034 11.6057 0.8762 23 7 6.6239 12.7984 0.6833 24 14 4.2649 11.4221 1.1508 25 1 3.9700 11.5115 2.6035 26 1 3.5465 12.5051 0.4323 27 1 3.8165 10.1037 0.6349 28 6 6.7186 6.9081 1.0345 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.9500 -0.8401 -0.0004 33 1 3.7934 0.9594 -2.1386 34 1 5.2463 0.4461 -1.2482 35 1 3.7929 -0.5819 -1.2483 36 1 3.5783 3.2595 -0.3540 37 1 7.6026 3.8229 1.4082 38 1 9.6052 5.1906 0.6294 39 1 10.4893 7.4810 0.4786 40 1 8.9730 9.4063 0.6910 41 1 6.0531 13.5826 0.6848 42 1 5.6619 6.7477 1.1897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252684168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:47 Heat of formation + Delta-G solvation = -119.497471 kcal Electronic energy + Delta-G solvation = -27778.854153 eV Core-core repulsion = 23531.385525 eV Total energy + Delta-G solvation = -4247.468628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.30661 -41.31379 -40.67744 -39.78691 -38.38011 -36.59941 -35.83460 -35.54530 -34.45178 -32.16713 -31.40946 -30.39764 -27.90264 -27.33213 -26.68297 -24.82020 -23.61765 -22.79940 -21.63085 -21.46080 -20.34640 -19.94400 -19.27991 -18.22160 -18.09810 -17.36234 -17.24275 -16.96401 -16.84557 -16.56835 -16.33524 -15.97668 -15.83709 -15.58876 -15.26260 -15.16188 -14.80296 -14.43317 -14.31470 -14.26282 -14.17349 -13.59029 -13.42529 -13.34508 -13.17570 -13.11031 -12.81030 -12.77862 -12.67894 -12.53370 -12.03823 -11.48241 -11.40000 -11.18477 -10.89581 -10.79272 -10.55549 -10.24226 -9.49255 -9.01737 -8.52071 -6.23922 -0.09023 0.53694 0.61815 1.01388 1.27960 1.31543 1.37648 1.49275 1.91844 2.06293 2.25955 2.42785 2.72454 3.01309 3.06870 3.29453 3.53252 3.88709 3.99715 4.07278 4.31460 4.33643 4.42052 4.52694 4.55288 4.60575 4.65005 4.71289 4.79672 4.94589 4.97402 5.16180 5.22914 5.29095 5.29356 5.34030 5.64373 5.70853 5.78084 5.86357 6.11607 6.17589 6.34892 6.55073 6.76672 6.82937 7.06177 7.57990 8.59150 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.002618 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.173945 B =10690.782861 C =12600.162082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.710 5.710 3 C 0.506 3.494 4 O -0.577 6.577 5 C 0.122 3.878 6 H 0.135 0.865 7 C -0.156 4.156 8 N -0.684 5.684 9 C 0.531 3.469 10 O -0.520 6.520 11 C 0.498 3.502 12 O -0.524 6.524 13 N -0.623 5.623 14 C 0.173 3.827 15 C -0.186 4.186 16 C -0.050 4.050 17 C -0.241 4.241 18 C 0.134 3.866 19 O -0.247 6.247 20 C -0.397 4.397 21 H 0.090 0.910 22 C 0.015 3.985 23 N -0.918 5.918 24 Si 0.961 3.039 25 H -0.264 1.264 26 H -0.264 1.264 27 H -0.274 1.274 28 C -0.200 4.200 29 H 0.117 0.883 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.424 0.576 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.418 0.582 37 H 0.437 0.563 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.117 0.883 41 H 0.285 0.715 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -33.912 -1.896 34.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.362 5.362 3 C 0.292 3.708 4 O -0.457 6.457 5 C 0.015 3.985 6 H 0.153 0.847 7 C -0.214 4.214 8 N -0.338 5.338 9 C 0.311 3.689 10 O -0.396 6.396 11 C 0.280 3.720 12 O -0.399 6.399 13 N -0.271 5.271 14 C 0.079 3.921 15 C -0.206 4.206 16 C -0.068 4.068 17 C -0.261 4.261 18 C 0.084 3.916 19 O -0.155 6.155 20 C -0.473 4.473 21 H 0.108 0.892 22 C -0.184 4.184 23 N -0.558 5.558 24 Si 0.784 3.216 25 H -0.189 1.189 26 H -0.188 1.188 27 H -0.199 1.199 28 C -0.221 4.221 29 H 0.135 0.865 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.256 0.744 37 H 0.278 0.722 38 H 0.184 0.816 39 H 0.178 0.822 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.500 -33.036 -1.876 33.543 hybrid contribution -0.594 0.690 0.127 0.919 sum -6.093 -32.346 -1.749 32.961 Atomic orbital electron populations 1.21733 0.78281 1.04659 1.01508 1.45582 1.08503 1.08208 1.73924 1.20776 0.89994 0.84405 0.75660 1.90775 1.70734 1.33081 1.51079 1.21154 0.90282 0.82680 1.04350 0.84715 1.22176 1.02995 1.01708 0.94512 1.45604 1.16449 1.11195 1.60536 1.19430 0.82730 0.87813 0.78920 1.90756 1.56068 1.47087 1.45696 1.20558 0.82581 0.89899 0.78943 1.90878 1.55742 1.48449 1.44825 1.42877 1.17562 1.09756 1.56901 1.17260 0.92890 0.82363 0.99591 1.20956 0.92605 0.98479 1.08605 1.21043 1.00207 0.90623 0.94944 1.21422 0.92861 1.00963 1.10809 1.19330 0.90276 0.87405 0.94543 1.83533 1.37481 1.13771 1.80672 1.20771 0.95433 0.80516 1.50620 0.89226 1.25154 1.03992 0.93395 0.95829 1.69705 1.38330 0.98446 1.49357 0.85357 0.78735 0.78235 0.79258 1.18906 1.18813 1.19866 1.20202 1.00563 0.89360 1.11998 0.86463 0.93375 0.93053 0.73843 0.91992 0.90799 0.87025 0.74406 0.72241 0.81553 0.82241 0.86477 0.90520 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.70 127.77 1.37 1.96 16 2 N -0.71 -5.40 5.61 -484.53 -2.72 -8.11 16 3 C 0.51 8.17 7.22 87.66 0.63 8.80 16 4 O -0.58 -15.43 15.84 -3.04 -0.05 -15.48 16 5 C 0.12 1.67 2.98 44.24 0.13 1.81 16 6 H 0.14 1.48 7.58 -2.38 -0.02 1.47 16 7 C -0.16 -1.30 9.38 71.98 0.68 -0.63 16 8 N -0.68 -14.49 4.95 -447.52 -2.21 -16.70 16 9 C 0.53 12.53 7.85 87.24 0.68 13.22 16 10 O -0.52 -11.88 16.14 -3.27 -0.05 -11.93 16 11 C 0.50 14.73 7.73 87.24 0.67 15.41 16 12 O -0.52 -19.92 13.91 -3.33 -0.05 -19.96 16 13 N -0.62 -16.64 5.32 -304.89 -1.62 -18.26 16 14 C 0.17 5.81 6.29 38.19 0.24 6.05 16 15 C -0.19 -5.25 9.96 22.43 0.22 -5.02 16 16 C -0.05 -1.59 10.03 22.23 0.22 -1.37 16 17 C -0.24 -10.49 9.17 22.42 0.21 -10.28 16 18 C 0.13 6.67 6.64 22.56 0.15 6.82 16 19 O -0.25 -14.30 8.58 -22.72 -0.20 -14.49 16 20 C -0.40 -24.08 9.95 67.92 0.68 -23.40 16 21 H 0.09 5.54 5.43 -2.91 -0.02 5.53 16 22 C 0.02 0.91 5.49 84.83 0.47 1.38 16 23 N -0.92 -55.74 13.96 21.61 0.30 -55.44 16 24 Si 0.96 48.16 28.62 68.60 1.96 50.12 16 25 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.27 -14.30 7.11 99.48 0.71 -13.60 16 28 C -0.20 -8.78 8.64 22.52 0.19 -8.59 16 29 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.42 -0.12 8.25 -92.71 -0.76 -0.89 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 0.11 7.56 -2.39 -0.02 0.09 16 36 H 0.42 10.42 7.26 -92.71 -0.67 9.75 16 37 H 0.44 8.50 8.30 -92.71 -0.77 7.74 16 38 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 40 H 0.12 5.50 5.63 -2.91 -0.02 5.48 16 41 H 0.29 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.12 5.49 6.23 -2.91 -0.02 5.47 16 Total: -1.00 -83.11 367.66 0.83 -82.28 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -1.09 Total: 21.83 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.55 Total: 6.15 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -6.25 Total: -98.52 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -0.34 Total: -61.87 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.96 Total: 50.12 kcal Total: -83.11 0.83 -82.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252684168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.214 kcal (2) G-P(sol) polarization free energy of solvation -83.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds