Wall clock time and date at job start Tue Mar 31 2020 18:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35945 * 119.25248 * 2 1 4 4 C 1.38343 * 119.27692 * 179.97438 * 3 2 1 5 5 C 1.46566 * 120.97913 * 180.02562 * 4 3 2 6 6 C 1.35301 * 120.00289 * 185.57856 * 5 4 3 7 7 C 1.41627 * 120.00069 * 174.91423 * 6 5 4 8 8 O 1.21758 * 120.00310 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99933 * 179.97438 * 7 6 5 10 10 C 1.47578 * 134.49413 * 179.97438 * 9 7 6 11 11 C 1.53941 * 86.12068 * 155.35664 * 10 9 7 12 12 O 1.42900 * 113.74594 * 269.15935 * 11 10 9 13 13 C 1.50700 * 113.74262 * 137.95193 * 11 10 9 14 14 H 1.07997 * 119.99910 * 1.92613 * 13 11 10 15 15 C 1.37877 * 119.99863 * 181.92872 * 13 11 10 16 16 N 1.31517 * 120.00307 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99835 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46972 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47102 * 299.99735 * 17 15 13 20 20 H 1.48499 * 109.46885 * 60.00061 * 17 15 13 21 21 C 1.47818 * 134.45615 * 359.86442 * 9 7 6 22 22 C 1.47338 * 118.04643 * 0.27474 * 4 3 2 23 23 O 1.21670 * 120.74304 * 179.70085 * 22 4 3 24 24 N 1.34969 * 118.51383 * 359.46563 * 22 4 3 25 25 C 1.46504 * 119.76072 * 180.26443 * 24 22 4 26 26 C 1.34226 * 119.24401 * 180.02562 * 2 1 3 27 27 O 1.21559 * 118.91013 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.46333 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47452 * 119.99559 * 1 2 3 30 30 H 1.08996 * 109.47444 * 240.00218 * 1 2 3 31 31 H 1.08006 * 120.36359 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.99542 * 5.57918 * 5 4 3 33 33 H 1.08005 * 119.99670 * 354.91082 * 6 5 4 34 34 H 1.09002 * 113.76603 * 41.05695 * 10 9 7 35 35 H 1.08992 * 113.87282 * 269.67525 * 10 9 7 36 36 H 0.96696 * 114.00295 * 178.07660 * 12 11 10 37 37 H 0.96996 * 120.00359 * 179.97438 * 16 15 13 38 38 H 1.08999 * 113.76915 * 90.38077 * 21 9 7 39 39 H 1.09005 * 113.83382 * 318.91567 * 21 9 7 40 40 H 1.09000 * 109.47181 * 270.27617 * 25 24 22 41 41 H 1.09000 * 109.47056 * 30.28259 * 25 24 22 42 42 H 1.09008 * 109.47058 * 150.27608 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1294 1.1861 0.0000 4 6 3.5128 1.1867 0.0005 5 6 4.2667 2.4436 0.0011 6 6 5.6148 2.4240 -0.1123 7 6 6.3341 3.6392 -0.2201 8 8 5.7393 4.7016 -0.2113 9 7 7.6770 3.6197 -0.3326 10 6 8.7194 4.6565 -0.4612 11 6 9.6809 3.6164 0.1419 12 8 9.7711 3.6744 1.5668 13 6 11.0287 3.5743 -0.5309 14 1 11.2523 4.2592 -1.3354 15 6 11.9763 2.6612 -0.1194 16 7 11.7042 1.8275 0.8607 17 14 13.6468 2.6085 -0.9538 18 1 14.4779 1.5472 -0.3309 19 1 13.4693 2.3148 -2.3986 20 1 14.3212 3.9219 -0.7948 21 6 8.6970 2.5506 -0.3744 22 6 4.2061 -0.1134 -0.0051 23 8 5.4215 -0.1701 -0.0104 24 7 3.4629 -1.2400 0.0005 25 6 4.1240 -2.5474 0.0009 26 6 2.1208 -1.1712 -0.0005 27 8 1.4794 -2.2038 -0.0015 28 1 -0.3632 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8899 31 1 1.5831 2.1178 0.0004 32 1 3.7460 3.3855 0.0921 33 1 6.1423 1.4816 -0.1204 34 1 8.5558 5.5253 0.1765 35 1 8.9512 4.9233 -1.4922 36 1 10.3515 3.0036 1.9518 37 1 12.3707 1.1849 1.1499 38 1 8.9212 2.1964 -1.3806 39 1 8.5156 1.7408 0.3324 40 1 4.2883 -2.8718 -1.0266 41 1 5.0820 -2.4699 0.5151 42 1 3.4936 -3.2732 0.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255318022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:17 Heat of formation + Delta-G solvation = -45.665016 kcal Electronic energy + Delta-G solvation = -28594.401653 eV Core-core repulsion = 24350.134640 eV Total energy + Delta-G solvation = -4244.267012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.54567 -39.63964 -39.26009 -37.81442 -37.34225 -35.61866 -34.06124 -33.80367 -32.14820 -30.79976 -28.92848 -28.27880 -27.22863 -25.59721 -25.14167 -24.14097 -23.83580 -21.59967 -20.09369 -19.29287 -17.94281 -17.63896 -17.55164 -17.50129 -17.18976 -16.21235 -15.96162 -15.46508 -15.25769 -15.21976 -14.91996 -14.54238 -14.10573 -13.96155 -13.80494 -13.75498 -13.23036 -13.09954 -12.90748 -12.65828 -12.56359 -12.37006 -12.07889 -12.01309 -11.87428 -11.48853 -11.27327 -11.00381 -10.96723 -10.48455 -10.28290 -10.22185 -10.09779 -10.02385 -9.48029 -9.12402 -8.69569 -8.33214 -8.09532 -7.64546 -6.31808 -4.42144 0.29029 1.47670 1.50672 1.99897 2.55175 3.16669 3.21033 3.26558 3.28906 3.73087 3.83639 4.04651 4.12581 4.25099 4.43827 4.72946 4.78298 4.89694 4.94902 5.03140 5.03765 5.08937 5.12729 5.44351 5.50876 5.63982 5.66539 5.80360 5.93446 6.08924 6.26543 6.41968 6.47738 6.62860 6.65960 6.80487 6.84401 6.93161 7.19131 7.21675 7.60000 7.69773 7.89991 8.59683 8.60606 8.89053 9.28557 9.50671 10.74837 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018144 B = 0.002680 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.844072 B =10445.142697 C =11646.199285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.529 5.529 3 C 0.171 3.829 4 C -0.220 4.220 5 C -0.032 4.032 6 C -0.188 4.188 7 C 0.557 3.443 8 O -0.579 6.579 9 N -0.623 5.623 10 C 0.111 3.889 11 C 0.238 3.762 12 O -0.572 6.572 13 C -0.537 4.537 14 H 0.070 0.930 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.907 3.093 18 H -0.285 1.285 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.080 3.920 22 C 0.547 3.453 23 O -0.482 6.482 24 N -0.554 5.554 25 C 0.078 3.922 26 C 0.691 3.309 27 O -0.542 6.542 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.186 0.814 32 H 0.141 0.859 33 H 0.159 0.841 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.391 0.609 37 H 0.273 0.727 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.207 -6.817 -1.811 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.247 5.247 3 C 0.047 3.953 4 C -0.229 4.229 5 C -0.054 4.054 6 C -0.208 4.208 7 C 0.350 3.650 8 O -0.463 6.463 9 N -0.355 5.355 10 C -0.011 4.011 11 C 0.196 3.804 12 O -0.384 6.384 13 C -0.575 4.575 14 H 0.089 0.911 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.734 3.266 18 H -0.211 1.211 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.042 4.042 22 C 0.341 3.659 23 O -0.354 6.354 24 N -0.298 5.298 25 C -0.062 4.062 26 C 0.394 3.606 27 O -0.416 6.416 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.203 0.797 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.246 0.754 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.771 -6.700 -1.751 22.846 hybrid contribution 1.229 -0.675 -0.391 1.455 sum -20.542 -7.375 -2.143 21.931 Atomic orbital electron populations 1.22128 0.74324 1.04631 1.04814 1.44336 1.09730 1.04310 1.66324 1.22923 0.92379 0.89682 0.90357 1.20569 0.91486 0.93395 1.17483 1.21450 0.93806 0.93524 0.96573 1.22980 0.95554 1.00640 1.01656 1.16795 0.80948 0.89437 0.77803 1.90724 1.68241 1.33227 1.54145 1.50189 1.03724 1.12790 1.68808 1.23427 0.83805 0.93740 1.00159 1.19856 0.91311 0.88635 0.80570 1.86054 1.71802 1.60638 1.19911 1.21461 0.98054 1.19069 1.18952 0.91148 1.25071 0.99164 0.94219 0.94622 1.69400 1.35789 1.20753 1.27732 0.86404 0.82614 0.77951 0.79605 1.21056 1.19941 1.19909 1.24358 0.85085 0.93682 1.01111 1.18739 0.87491 0.83540 0.76121 1.90753 1.12450 1.85543 1.46689 1.46334 1.05696 1.10815 1.66945 1.21971 0.99055 0.81046 1.04167 1.15697 0.81944 0.83981 0.78981 1.91005 1.65053 1.31303 1.54196 0.88476 0.89883 0.89849 0.79670 0.84174 0.82355 0.91162 0.89671 0.75417 0.91684 0.90050 0.91066 0.90654 0.88473 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 9.94 59.85 0.59 0.88 16 2 N -0.53 -3.87 2.98 -128.42 -0.38 -4.25 16 3 C 0.17 1.18 10.20 -15.69 -0.16 1.02 16 4 C -0.22 -2.50 6.04 -102.80 -0.62 -3.12 16 5 C -0.03 -0.45 9.42 -37.27 -0.35 -0.80 16 6 C -0.19 -3.43 8.93 -39.34 -0.35 -3.78 16 7 C 0.56 12.12 7.79 -14.97 -0.12 12.00 16 8 O -0.58 -13.59 16.84 5.14 0.09 -13.50 16 9 N -0.62 -14.13 3.61 -181.51 -0.66 -14.79 16 10 C 0.11 2.53 8.23 -2.97 -0.02 2.50 16 11 C 0.24 5.92 1.40 -90.84 -0.13 5.79 16 12 O -0.57 -15.19 13.49 -35.23 -0.48 -15.67 16 13 C -0.54 -13.80 8.61 -34.44 -0.30 -14.10 16 14 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.07 1.83 5.40 -17.82 -0.10 1.74 16 16 N -0.90 -23.28 11.20 55.43 0.62 -22.66 16 17 Si 0.91 19.85 29.54 -169.99 -5.02 14.83 16 18 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 21 C 0.08 1.85 7.77 -2.82 -0.02 1.83 16 22 C 0.55 7.41 7.60 -12.47 -0.09 7.32 16 23 O -0.48 -8.10 13.23 5.22 0.07 -8.04 16 24 N -0.55 -6.41 2.96 -129.58 -0.38 -6.79 16 25 C 0.08 0.76 10.11 59.85 0.60 1.37 16 26 C 0.69 7.32 8.09 -87.76 -0.71 6.61 16 27 O -0.54 -6.68 15.63 5.31 0.08 -6.60 16 28 H 0.10 0.01 7.72 -51.93 -0.40 -0.39 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.19 0.47 7.84 -52.48 -0.41 0.05 16 32 H 0.14 1.78 7.46 -52.48 -0.39 1.39 16 33 H 0.16 3.07 4.54 -52.50 -0.24 2.83 16 34 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 36 H 0.39 10.43 6.60 45.56 0.30 10.73 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.08 1.81 8.09 -51.93 -0.42 1.39 16 39 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.97 7.44 -51.93 -0.39 0.58 16 42 H 0.09 0.80 7.35 -51.92 -0.38 0.42 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -34.37 362.27 -6.78 -41.15 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.41 Total: 11.61 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: -1.77 Total: 19.24 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.80 Total: -48.49 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.24 Total: -43.80 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.37 -6.78 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255318022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.515 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds